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Properties
| Property Name | Value |
|---|
| TranscriptId | 422413 |
| Track | FilteredModels2 |
| ProteinId | 422327 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:679627..681273 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4033 ID=mRNA_4033|Name=jgi.p|Nanoce1779_2|422327|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp
GTGGACCCGCCGTGTTGCTTCTTACGGTAATGCACTTTAGAGCCTGAGGG
CAGAAGAAAGTCCCATCCCAGTTATTTGTGGGGAGCGCACTGCTGTACTG
ATCACTACGCGTGCGAGGGAGAGGATCATGTGATTATCTTTATTTTTGTC
GCTCCAGTAAAACTTTAGGGGCCCATGCTACTTGTGCTGATAGCTGCCCG
TTCTCCTTCCGCGCATACCTTGTTTACGCACCGCTCGAGGCCCTGACTCT
AAGCATTCTCTATCTGTCCCCTCCGCACCCATAGCATCGCTTGTCCCTGG
CCGACGCCCGAGCCACAGCTTTATACCCAGCTAGAGACTGCCTCGAGAGC
GATTAGCCAAAGGGACCACCATCATTGTGCTTTGAGTACGCCCACTTCAG
AGTCATGTCCTCCGACAAAAACTCTCAGGTAAATTCAAGTGTGTGTTCAG
TGAGCAGCTGATGCGGAGCGTTATGGTTCCGTGTCGGGCTGTCCGAACGT
GATTTTTAGTCTTGCTCTATTTCTCCTGTTGGGCCAGGCGAGGGGCTGGA
GGTTGAAGGGCGCGCATGCTACGCCACGGGCTCCGCGCCTTGACAGGAAA
GAGCTTGTCACTAATGAGTGGGAGCATGAGTGTCATTCTCTTACTATCGG
TGGCGCTCCTCTTTCATAAATACCCTTTCCACTCTTCTCATATATTCTCA
CGCACTAACTATCACACCTACGTACAGGCCTATCCGGGCGCCGCCACTGC
CTCGACGATCCCAAAAAATGATTTGCAGCAACCTTTGTTGCAACCAACCG
CACCCTCGGCTCCCCATGTGGCCATTGATATTGACGAGCGGCGTAATAAA
CAGAAGAGACAGGCGGGAATTTCTGTTTGCGGAGTCGTAGCTCTGGTGGT
GGTGCTCTTACTCACCTTCTTGATTCCTCGCAATCCTTCCATTGAGTTGT
CGGGGGGTGAAGTGGGGCTTTCTGGCGTCCCACTTTACGTCAATGCGTCT
TTCCGTTTCAGCAATCGCAATTTTTACAAGACCACGTTTACCAATCTGCA
CTTTGGTCTGTATACAGTCTCCGACACGGGCGTGGGCGTGATAGGCGATG
CCTCGTTCGAGGGGCCGATTGAAGTCAAGGCCCGTCACCACAAAACAATC
CAAGTGGGCATCAAGACGGTCAAGGGCACCGCCTTGAAGATAAACGACTA
CTGCAAGTCCCACCCCTCCATCCTCATGTTCTTGTCCAATGCCACCGTGG
AAGCCACTTCGGAGTATAGGAACTTCGGGACCAAAGGCGTATATTCTCCC
TTTGGAGCCTTCTTTATGTGTCCGCCTCCCCCTCCCTCCCCCTCCCTTTT
GTTGGCGTAAGGTGGGGCGGAGTAGCAGAAGCAGGCAGAGGGAGAGGGTG
AGACATTGGAGTTGAACGAGGAAATGGAAAGCGAAGATGGCAGAAAGTAA
GCGGAAGGAAGGATGGAATGTGGGTATGGGTGTGGGTATGCGGGTGCATG
TGTGGATGTATGCATGTTAAAGATGAAAGCGAGTATCGGGCATCTTGAGA
TAGCAGATCGATGGAAATTTATTTTTTATGGAATTAGTCTAAGGAAGGCC
TGTGCAGGAAAAAGTTCAACACTCCAACAAATGGGGCGTTTTCTGAG back to topprotein sequence of jgi.p|Nanoce1779_2|422327 >mRNA_4033-protein ID=mRNA_4033-protein|Name=jgi.p|Nanoce1779_2|422327|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MLRHGLRALTGKSLSLMSGSMSVILLLSVALLFHKYPFHSSHIFSRTNYH
TYVQAYPGAATASTIPKNDLQQPLLQPTAPSAPHVAIDIDERRNKQKRQA
GISVCGVVALVVVLLLTFLIPRNPSIELSGGEVGLSGVPLYVNASFRFSN
RNFYKTTFTNLHFGLYTVSDTGVGVIGDASFEGPIEVKARHHKTIQVGIK
TVKGTALKINDYCKSHPSILMFLSNATVEATSEYRNFGTKGVYSPFGAFF
MCPPPPPSPSLLLA* back to topmRNA from alignment at scaffold_8:679627..681273+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4033 ID=mRNA_4033|Name=jgi.p|Nanoce1779_2|422327|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp|location=Sequence derived from alignment at scaffold_8:679627..681273+ (Nannochloropsis oceanica)
GTGGACCCGCCGTGTTGCTTCTTACGGTAATGCACTTTAGAGCCTGAGGG
CAGAAGAAAGTCCCATCCCAGTTATTTGTGGGGAGCGCACTGCTGTACTG
ATCACTACGCGTGCGAGGGAGAGGATCATGTGATTATCTTTATTTTTGTC
GCTCCAGTAAAACTTTAGGGGCCCATGCTACTTGTGCTGATAGCTGCCCG
TTCTCCTTCCGCGCATACCTTGTTTACGCACCGCTCGAGGCCCTGACTCT
AAGCATTCTCTATCTGTCCCCTCCGCACCCATAGCATCGCTTGTCCCTGG
CCGACGCCCGAGCCACAGCTTTATACCCAGCTAGAGACTGCCTCGAGAGC
GATTAGCCAAAGGGACCACCATCATTGTGCTTTGAGTACGCCCACTTCAG
AGTCATGTCCTCCGACAAAAACTCTCAGGTAAATTCAAGTGTGTGTTCAG
TGAGCAGCTGATGCGGAGCGTTATGGTTCCGTGTCGGGCTGTCCGAACGT
GATTTTTAGTCTTGCTCTATTTCTCCTGTTGGGCCAGGCGAGGGGCTGGA
GGTTGAAGGGCGCGCATGCTACGCCACGGGCTCCGCGCCTTGACAGGAAA
GAGCTTGTCACTAATGAGTGGGAGCATGAGTGTCATTCTCTTACTATCGG
TGGCGCTCCTCTTTCATAAATACCCTTTCCACTCTTCTCATATATTCTCA
CGCACTAACTATCACACCTACGTACAGGCCTATCCGGGCGCCGCCACTGC
CTCGACGATCCCAAAAAATGATTTGCAGCAACCTTTGTTGCAACCAACCG
CACCCTCGGCTCCCCATGTGGCCATTGATATTGACGAGCGGCGTAATAAA
CAGAAGAGACAGGCGGGAATTTCTGTTTGCGGAGTCGTAGCTCTGGTGGT
GGTGCTCTTACTCACCTTCTTGATTCCTCGCAATCCTTCCATTGAGTTGT
CGGGGGGTGAAGTGGGGCTTTCTGGCGTCCCACTTTACGTCAATGCGTCT
TTCCGTTTCAGCAATCGCAATTTTTACAAGACCACGTTTACCAATCTGCA
CTTTGGTCTGTATACAGTCTCCGACACGGGCGTGGGCGTGATAGGCGATG
CCTCGTTCGAGGGGCCGATTGAAGTCAAGGCCCGTCACCACAAAACAATC
CAAGTGGGCATCAAGACGGTCAAGGGCACCGCCTTGAAGATAAACGACTA
CTGCAAGTCCCACCCCTCCATCCTCATGTTCTTGTCCAATGCCACCGTGG
AAGCCACTTCGGAGTATAGGAACTTCGGGACCAAAGGCGTATATTCTCCC
TTTGGAGCCTTCTTTATGTGTCCGCCTCCCCCTCCCTCCCCCTCCCTTTT
GTTGGCGTAAGGTGGGGCGGAGTAGCAGAAGCAGGCAGAGGGAGAGGGTG
AGACATTGGAGTTGAACGAGGAAATGGAAAGCGAAGATGGCAGAAAGTAA
GCGGAAGGAAGGATGGAATGTGGGTATGGGTGTGGGTATGCGGGTGCATG
TGTGGATGTATGCATGTTAAAGATGAAAGCGAGTATCGGGCATCTTGAGA
TAGCAGATCGATGGAAATTTATTTTTTATGGAATTAGTCTAAGGAAGGCC
TGTGCAGGAAAAAGTTCAACACTCCAACAAATGGGGCGTTTTCTGAG back to topCoding sequence (CDS) from alignment at scaffold_8:679627..681273+ >mRNA_4033 ID=mRNA_4033|Name=jgi.p|Nanoce1779_2|422327|organism=Nannochloropsis oceanica|type=CDS|length=795bp|location=Sequence derived from alignment at scaffold_8:679627..681273+ (Nannochloropsis oceanica)
ATGCTACGCCACGGGCTCCGCGCCTTGACAGGAAAGAGCTTGTCACTAAT
GAGTGGGAGCATGAGTGTCATTCTCTTACTATCGGTGGCGCTCCTCTTTC
ATAAATACCCTTTCCACTCTTCTCATATATTCTCACGCACTAACTATCAC
ACCTACGTACAGGCCTATCCGGGCGCCGCCACTGCCTCGACGATCCCAAA
AAATGATTTGCAGCAACCTTTGTTGCAACCAACCGCACCCTCGGCTCCCC
ATGTGGCCATTGATATTGACGAGCGGCGTAATAAACAGAAGAGACAGGCG
GGAATTTCTGTTTGCGGAGTCGTAGCTCTGGTGGTGGTGCTCTTACTCAC
CTTCTTGATTCCTCGCAATCCTTCCATTGAGTTGTCGGGGGGTGAAGTGG
GGCTTTCTGGCGTCCCACTTTACGTCAATGCGTCTTTCCGTTTCAGCAAT
CGCAATTTTTACAAGACCACGTTTACCAATCTGCACTTTGGTCTGTATAC
AGTCTCCGACACGGGCGTGGGCGTGATAGGCGATGCCTCGTTCGAGGGGC
CGATTGAAGTCAAGGCCCGTCACCACAAAACAATCCAAGTGGGCATCAAG
ACGGTCAAGGGCACCGCCTTGAAGATAAACGACTACTGCAAGTCCCACCC
CTCCATCCTCATGTTCTTGTCCAATGCCACCGTGGAAGCCACTTCGGAGT
ATAGGAACTTCGGGACCAAAGGCGTATATTCTCCCTTTGGAGCCTTCTTT
ATGTGTCCGCCTCCCCCTCCCTCCCCCTCCCTTTTGTTGGCGTAA back to top
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