jgi.p|Nanoce1779_2|554372, mRNA_4108 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|554372
Unique NamemRNA_4108
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1855
Alignment locationscaffold_8:854385..856387 -

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Properties
Property NameValue
TranscriptId554458
TrackFilteredModels2
ProteinId554372
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:854385..856387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554372gene_4108Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|554372mRNA_4108-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4108CDS_4108Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4108 ID=mRNA_4108|Name=jgi.p|Nanoce1779_2|554372|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp
CCCCGTTCCTCCCTCCTCCTCTTCCTCCTCCTCCTCCTCAACCAACCCCT
CCAAGAACATGAAAAAGATCGACGTCCACATCGAAGCCCGTCAGGCTATC
ACCAGCGCTGTCCTCCCCTCAGATATCAAAAAACGGGTCCTTTCCTTCCT
GCAATCTCACGTGAGAGTCTATCGCCTCGGTCCGCTCGGGGACTTTGCGT
CCCTCGATCCTTACCTGGGGGAGCACGTCCAATGCATTGTCATCACGGAG
CTTGGGAACACGGGGCAAGAGACTGCTGTGTCTAGCTGGCGAGCATTGTC
TCACGTCTATGTATACGCTGTCTTTGGAGGCCAACATGTGGGTGGAACAG
ATTTCGCCTTGGAGGCCGACGGAGGAGGAGGAGGAGGAGGAGGAGAGGGA
GATGGAGGAGGAGCAGCGGCAGCCGCCTCGTCCTCCACGTCCTGGTGCCC
TGTGGCGTTTACCTCCTACGTGTGTCCTTGCCCTGAGCTTGTCAATGTGT
GGGAGAGCATTCATGTCGCCCCCTCCACGAAACAGGCCTTGCTCAGCCTA
GCTGAAAGCTCCATGCTTTTTTCAAACGCCGGTGTGGACCCTACCTTGGT
GAGTGGGAATCGACTCATGCTCTTGTACGGTGCGCCGGGGACGGGCAAGA
CCTCCTTGTCTCGAGGCCTTGCACAGAAATTGGCCATTAGGCATGGAGAA
AGCTTTGCGGCTGTGGAGCTCTTGAGTGTCAATGCGCACGCCTTGCTCTC
TAAGTTTTTCGGAGAGAGCAGTTCGTTAGTTGGGCGGATGTTTGGTTCAG
TGAGGGAGAAGGTGGCAGAGGAGAAGACCACGCTATTTGTGCTTGCGATT
GATGAGGTGGAGACGATGTGTAGCAGCAGAAGCCAGGCATTGTCCAAGGG
GACGAACGAGCCGAGCGATGCCGTCCGTGTCGTGAATGCTGTGTTGACAG
AGATGGACCGACTGAAGGCATTTAGGAACGTCCTGACCGTGGCGACATCG
AATGTGACTCAGGCGTTGGATGAGGCGTTCCTCGACCGCTGCGACTTAAA
GCTCCACGTGGGCCTGCCCCGTCCCGAGGGGCGGTATGCCATCCTTCGTT
CCGCCCTTGTGGAGCTCATGCGTTGTGGGGTCATCATCCCCCGCATGCAT
CTGCCTGAACGCGTTGAGTTGCTTCCCTCCCTTGCTGCTGCAACTTATTC
CACTTCCCTTCCTCCTCAGCACCAACAGCACCAACAGCACCAACAGCACA
ACCAGCAGCGGCAGCAGCAGCAGGCTCCAGGGGTAAGGCAGCTACTACTC
CAGTTGGTTGAACGCACGGAGGGGATGAGTGGACGTGGCCTGCGGAAATT
GCCTTTGCTGGCCCATTCGCTGATGGCAGCACCTCGGACGGTGGGGCTGG
ACGTGTTTTTAGGGGCGATGGACGAGGCGGTCAGGCAGGGGAGGATCGAG
CGGGAATAGGGATGGAAGGAGGGAGGGAGCAAAGGAAGGAGAGGTGTATG
TGTAGGTGAAGGGGCATGTAGCAGATGTGGGACAGAAAGAACCAAAATTA
GTAGGGGTTATAATAAAGACCGATAGACTTCTTTCAATAGCCAGAATCAA
TCCAAAAATAGGGAGGTGAACAAGAGCAGAGAAGATGAAAGAAATAGAGC
CCAGTGAGTCCCTTGCTGGCTGCTGCAGCTCCGACGATGAAATCTTTGAA
TAGAGCTTTGACAAGGTGGCGCTTTCCATCTACCCAAACTACACTCTCTT
ATCTTCCACCCCTCCCTCCCTCCCTCCATCCCTTACTCCTCGGCTATTTC
ACGTCGTGTTCTCAAAACCCCCTATTGCCATGTAAATAAGTCTGTTTTTC
TACCC
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protein sequence of jgi.p|Nanoce1779_2|554372

>mRNA_4108-protein ID=mRNA_4108-protein|Name=jgi.p|Nanoce1779_2|554372|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MKKIDVHIEARQAITSAVLPSDIKKRVLSFLQSHVRVYRLGPLGDFASLD
PYLGEHVQCIVITELGNTGQETAVSSWRALSHVYVYAVFGGQHVGGTDFA
LEADGGGGGGGGEGDGGGAAAAASSSTSWCPVAFTSYVCPCPELVNVWES
IHVAPSTKQALLSLAESSMLFSNAGVDPTLVSGNRLMLLYGAPGTGKTSL
SRGLAQKLAIRHGESFAAVELLSVNAHALLSKFFGESSSLVGRMFGSVRE
KVAEEKTTLFVLAIDEVETMCSSRSQALSKGTNEPSDAVRVVNAVLTEMD
RLKAFRNVLTVATSNVTQALDEAFLDRCDLKLHVGLPRPEGRYAILRSAL
VELMRCGVIIPRMHLPERVELLPSLAAATYSTSLPPQHQQHQQHQQHNQQ
RQQQQAPGVRQLLLQLVERTEGMSGRGLRKLPLLAHSLMAAPRTVGLDVF
LGAMDEAVRQGRIERE*
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mRNA from alignment at scaffold_8:854385..856387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4108 ID=mRNA_4108|Name=jgi.p|Nanoce1779_2|554372|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at scaffold_8:854385..856387- (Nannochloropsis oceanica)
CCCCGTTCCTCCCTCCTCCTCTTCCTCCTCCTCCTCCTCAACCAACCCCT
CCAAGAACATGAAAAAGATCGACGTCCACATCGAAGCCCGTCAGGCTATC
ACCAGCGCTGTCCTCCCCTCAGATATCAAAAAACGGGTCCTTTCCTTCCT
GCAATCTCACGTGAGAGTCTATCGCCTCGGTCCGCTCGGGGACTTTGCGT
CCCTCGATCCTTACCTGGGGGAGCACGTCCAATGCATTGTCATCACGGAG
CTTGGGAACACGGGGCAAGAGACTGCTGTGTCTAGCTGGCGAGCATTGTC
TCACGTCTATGTATACGCTGTCTTTGGAGGCCAACATGTGGGTGGAACAG
ATTTCGCCTTGGAGGCCGACGGAGGAGGAGGAGGAGGAGGAGGAGAGGGA
GATGGAGGAGGAGCAGCGGCAGCCGCCTCGTCCTCCACGTCCTGGTGCCC
TGTGGCGTTTACCTCCTACGTGTGTCCTTGCCCTGAGCTTGTCAATGTGT
GGGAGAGCATTCATGTCGCCCCCTCCACGAAACAGGCCTTGCTCAGCCTA
GCTGAAAGCTCCATGCTTTTTTCAAACGCCGGTGTGGACCCTACCTTGGT
GAGTGGGAATCGACTCATGCTCTTGTACGGTGCGCCGGGGACGGGCAAGA
CCTCCTTGTCTCGAGGCCTTGCACAGAAATTGGCCATTAGGCATGGAGAA
AGCTTTGCGGCTGTGGAGCTCTTGAGTGTCAATGCGCACGCCTTGCTCTC
TAAGTTTTTCGGAGAGAGCAGTTCGTTAGTTGGGCGGATGTTTGGTTCAG
TGAGGGAGAAGGTGGCAGAGGAGAAGACCACGCTATTTGTGCTTGCGATT
GATGAGGTGGAGACGATGTGTAGCAGCAGAAGCCAGGCATTGTCCAAGGG
GACGAACGAGCCGAGCGATGCCGTCCGTGTCGTGAATGCTGTGTTGACAG
AGATGGACCGACTGAAGGCATTTAGGAACGTCCTGACCGTGGCGACATCG
AATGTGACTCAGGCGTTGGATGAGGTGAGGAGAAAGGAGGGGGAAAGGAA
GGAGTGGCAGGTACTTAGGTATCTCGAGCACCCCCTCACTGCCACTTTAA
AAGGCGCTGTCACGAATCGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCT
CTTCTCTGTCAATCTTCTGCAGGCGTTCCTCGACCGCTGCGACTTAAAGC
TCCACGTGGGCCTGCCCCGTCCCGAGGGGCGGTATGCCATCCTTCGTTCC
GCCCTTGTGGAGCTCATGCGTTGTGGGGTCATCATCCCCCGCATGCATCT
GCCTGAACGCGTTGAGTTGCTTCCCTCCCTTGCTGCTGCAACTTATTCCA
CTTCCCTTCCTCCTCAGCACCAACAGCACCAACAGCACCAACAGCACAAC
CAGCAGCGGCAGCAGCAGCAGGCTCCAGGGGTAAGGCAGCTACTACTCCA
GTTGGTTGAACGCACGGAGGGGATGAGTGGACGTGGCCTGCGGAAATTGC
CTTTGCTGGCCCATTCGCTGATGGCAGCACCTCGGACGGTGGGGCTGGAC
GTGTTTTTAGGGGCGATGGACGAGGCGGTCAGGCAGGGGAGGATCGAGCG
GGAATAGGGATGGAAGGAGGGAGGGAGCAAAGGAAGGAGAGGTGTATGTG
TAGGTGAAGGGGCATGTAGCAGATGTGGGACAGAAAGAACCAAAATTAGT
AGGGGTTATAATAAAGACCGATAGACTTCTTTCAATAGCCAGAATCAATC
CAAAAATAGGGAGGTGAACAAGAGCAGAGAAGATGAAAGAAATAGAGCCC
AGTGAGTCCCTTGCTGGCTGCTGCAGCTCCGACGATGAAATCTTTGAATA
GAGCTTTGACAAGGTGGCGCTTTCCATCTACCCAAACTACACTCTCTTAT
CTTCCACCCCTCCCTCCCTCCCTCCATCCCTTACTCCTCGGCTATTTCAC
GTCGTGTTCTCAAAACCCCCTATTGCCATGTAAATAAGTCTGTTTTTCTA
CCC
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Coding sequence (CDS) from alignment at scaffold_8:854385..856387-

>mRNA_4108 ID=mRNA_4108|Name=jgi.p|Nanoce1779_2|554372|organism=Nannochloropsis oceanica|type=CDS|length=2802bp|location=Sequence derived from alignment at scaffold_8:854385..856387- (Nannochloropsis oceanica)
GCGTTCCTCGACCGCTGCGACTTAAAGCTCCACGTGGGCCTGCCCCGTCC
CGAGGGGCGGTATGCCATCCTTCGTTCCGCCCTTGTGGAGCTCATGCGTT
GTGGGGTCATCATCCCCCGCATGCATCTGCCTGAACGCGTTGAGTTGCTT
CCCTCCCTTGCTGCTGCAACTTATTCCACTTCCCTTCCTCCTCAGCACCA
ACAGCACCAACAGCACCAACAGCACAACCAGCAGCGGCAGCAGCAGCAGG
CTCCAGGGGTAAGGCAGCTACTACTCCAGTTGGTTGAACGCACGGAGGGG
ATGAGTGGACGTGGCCTGCGGAAATTGCCTTTGCTGGCCCATTCGCTGAT
GGCAGCACCTCGGACGGTGGGGCTGGACGTGTTTTTAGGGGCGATGGACG
AGGCGGTCAGGCAGGGGAGGATCGAGCGGGAATAGATGAAAAAGATCGAC
GTCCACATCGAAGCCCGTCAGGCTATCACCAGCGCTGTCCTCCCCTCAGA
TATCAAAAAACGGGTCCTTTCCTTCCTGCAATCTCACGTGAGAGTCTATC
GCCTCGGTCCGCTCGGGGACTTTGCGTCCCTCGATCCTTACCTGGGGGAG
CACGTCCAATGCATTGTCATCACGGAGCTTGGGAACACGGGGCAAGAGAC
TGCTGTGTCTAGCTGGCGAGCATTGTCTCACGTCTATGTATACGCTGTCT
TTGGAGGCCAACATGTGGGTGGAACAGATTTCGCCTTGGAGGCCGACGGA
GGAGGAGGAGGAGGAGGAGGAGAGGGAGATGGAGGAGGAGCAGCGGCAGC
CGCCTCGTCCTCCACGTCCTGGTGCCCTGTGGCGTTTACCTCCTACGTGT
GTCCTTGCCCTGAGCTTGTCAATGTGTGGGAGAGCATTCATGTCGCCCCC
TCCACGAAACAGGCCTTGCTCAGCCTAGCTGAAAGCTCCATGCTTTTTTC
AAACGCCGGTGTGGACCCTACCTTGGTGAGTGGGAATCGACTCATGCTCT
TGTACGGTGCGCCGGGGACGGGCAAGACCTCCTTGTCTCGAGGCCTTGCA
CAGAAATTGGCCATTAGGCATGGAGAAAGCTTTGCGGCTGTGGAGCTCTT
GAGTGTCAATGCGCACGCCTTGCTCTCTAAGTTTTTCGGAGAGAGCAGTT
CGTTAGTTGGGCGGATGTTTGGTTCAGTGAGGGAGAAGGTGGCAGAGGAG
AAGACCACGCTATTTGTGCTTGCGATTGATGAGGTGGAGACGATGTGTAG
CAGCAGAAGCCAGGCATTGTCCAAGGGGACGAACGAGCCGAGCGATGCCG
TCCGTGTCGTGAATGCTGTGTTGACAGAGATGGACCGACTGAAGGCATTT
AGGAACGTCCTGACCGTGGCGACATCGAATGTGACTCAGGCGTTGGATGA
GGCGTTCCTCGACCGCTGCGACTTAAAGCTCCACGTGGGCCTGCCCCGTC
CCGAGGGGCGGTATGCCATCCTTCGTTCCGCCCTTGTGGAGCTCATGCGT
TGTGGGGTCATCATCCCCCGCATGCATCTGCCTGAACGCGTTGAGTTGCT
TCCCTCCCTTGCTGCTGCAACTTATTCCACTTCCCTTCCTCCTCAGCACC
AACAGCACCAACAGCACCAACAGCACAACCAGCAGCGGCAGCAGCAGCAG
GCTCCAGGGGTAAGGCAGCTACTACTCCAGTTGGTTGAACGCACGGAGGG
GATGAGTGGACGTGGCCTGCGGAAATTGCCTTTGCTGGCCCATTCGCTGA
TGGCAGCACCTCGGACGGTGGGGCTGGACGTGTTTTTAGGGGCGATGGAC
GAGGCGGTCAGGCAGGGGAGGATCGAGCGGGAATAGATGAAAAAGATCGA
CGTCCACATCGAAGCCCGTCAGGCTATCACCAGCGCTGTCCTCCCCTCAG
ATATCAAAAAACGGGTCCTTTCCTTCCTGCAATCTCACGTGAGAGTCTAT
CGCCTCGGTCCGCTCGGGGACTTTGCGTCCCTCGATCCTTACCTGGGGGA
GCACGTCCAATGCATTGTCATCACGGAGCTTGGGAACACGGGGCAAGAGA
CTGCTGTGTCTAGCTGGCGAGCATTGTCTCACGTCTATGTATACGCTGTC
TTTGGAGGCCAACATGTGGGTGGAACAGATTTCGCCTTGGAGGCCGACGG
AGGAGGAGGAGGAGGAGGAGGAGAGGGAGATGGAGGAGGAGCAGCGGCAG
CCGCCTCGTCCTCCACGTCCTGGTGCCCTGTGGCGTTTACCTCCTACGTG
TGTCCTTGCCCTGAGCTTGTCAATGTGTGGGAGAGCATTCATGTCGCCCC
CTCCACGAAACAGGCCTTGCTCAGCCTAGCTGAAAGCTCCATGCTTTTTT
CAAACGCCGGTGTGGACCCTACCTTGGTGAGTGGGAATCGACTCATGCTC
TTGTACGGTGCGCCGGGGACGGGCAAGACCTCCTTGTCTCGAGGCCTTGC
ACAGAAATTGGCCATTAGGCATGGAGAAAGCTTTGCGGCTGTGGAGCTCT
TGAGTGTCAATGCGCACGCCTTGCTCTCTAAGTTTTTCGGAGAGAGCAGT
TCGTTAGTTGGGCGGATGTTTGGTTCAGTGAGGGAGAAGGTGGCAGAGGA
GAAGACCACGCTATTTGTGCTTGCGATTGATGAGGTGGAGACGATGTGTA
GCAGCAGAAGCCAGGCATTGTCCAAGGGGACGAACGAGCCGAGCGATGCC
GTCCGTGTCGTGAATGCTGTGTTGACAGAGATGGACCGACTGAAGGCATT
TAGGAACGTCCTGACCGTGGCGACATCGAATGTGACTCAGGCGTTGGATG
AG
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Synonyms
Publications