jgi.p|Nanoce1779_2|586525, mRNA_4094 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586525
Unique Name	mRNA_4094
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1753
Alignment location	scaffold_8:822277..824029 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586611
Track	FilteredModels2
ProteinId	586525

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:822277..824029 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586525	gene_4094	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586525	mRNA_4094-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4094	CDS_4094	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:822277..824029+
coding sequence from alignment at scaffold_8:822277..824029+

mRNA sequence

>mRNA_4094 ID=mRNA_4094|Name=jgi.p|Nanoce1779_2|586525|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp
ACAGACACAGTCTCCTCTTAACACCATGTCGATCCGCTTCTACGCGCTCG
ACTCCCCCGAGCTCAAGGCCATGGAGACAAACGGGCACCTCCTGTTGGTG
GGCACCAAAGAAGCCTTGGAATTCTGCTCTCCAAACGTAGCTTTTTATGT
CAATTGCGCCGTCAAGGTCAGCTACCTAGAGCATACGGGCCTAGACCCTC
CTGCGCCTTTGCTTCGCTCCGTCACGAGCAAGCTGAGCCCCACCTTTGAT
ACCCATTCCTGCCTCGACACATGGGTGGACGTCGATGGCACAGTGGTCCG
TGTTACGTTGGGATGCCTTCCTTCCGGCCCCGCGTCCCGACACAACTGTC
CATCCAAGCCCCATGCCGTCACGGATATTGTCAAGAGCGTGGCAAGCGGA
GAAGGAACATTGCGAATTCTTATTACATTGGCTGCTGCCGACCACGCCGT
GGCGTTGGGCACGGCCGTGGCCAGAGCCTTCCCGCTTTACAACCACAAGA
GCGGCAACGGCAAGCCCTTGCGCAAGGTGGAGGTGGTCTTCAACATGACC
AGCGCCGCATTGGCAACTTGCATGCTGGTGAGCGGAGGCATTACGGATGA
GACGCAGAAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAACAACAAG
TCTTTGATCCTTCCTTGACGGTCCTCCACAAATTGCAGGCCTTGTCCGAC
GGCATCCAGCTTTGTGCCCGCCTCGTTGACGCCCCGCCCAATGAGATGCA
CACGGATGCCATGGTCGAGGAAGCGGGACAGGTCTTGCATCGCCTACAGA
AGCTCAAGACTCAGGATAACGTGACTGTTACCGTAATCCGAGGAGAAGAA
TTGAGAGAGAAGGGCTTTGGGGGCCTGTACGGTGTGGGCAAGGCGGCGGA
GCACCCGCCGGCACTGGTGGTGCTGACCTTGCTACCCAAGGTGATGGGGG
TTGGACGAGGGTCGGGTAGTAGTAGCGGCAGCATCAGCAACAGTGGCAAG
AAAGATAACACCGCGGGGACCAGTGTGGTGTGGGTGGGGAAGGGAATTGT
GTATGACACGGGAGGGTTAAGTATCAAAACCAAAACGGGCATGCCTGGTA
TGAAGAGGGACATGGGTGGCGCGGCTGCCATCCTGGCGGCTTTCGAAGCT
GCTGTTCGCCTTGGGTACCACAAAGGGCCTTTGCATGCTATTTTGTGCTT
GGCGGAAAATTCGGTAGCGGCGAAGGCGACGAGGCCAGATGACATTCATG
AAATGTACAGTGGCAAGACTGTGGAGATAAACAACACCGATGCCGAGGGA
AGGTTGGTTTTGGGGGATGGCGTTGCGTATGCCGTGAAGCAGTTGAAGCC
TGCCGTTATTTTGGACATGGCGACATTAACGGGCGCCCAGGGGGTGGCCA
CGGGGAAGAGGCACGCCGCTCTCTATTGTAACAATGAAGCCTTGGAAGAG
GCGGTGGTGGCGGTTGGGAGAGCGACAGGGGATCTAGCGCACGCCCTGCC
ATATGCCCCGGAATTCTTCCAGAGTGAGTTCCGCTCGGCGGTGGCGGACA
TGAAAAACAGCGTGGCCAACCGGGAGAACGCGCAGTGCTCGTGCGCGGGG
CAGTTTGTGGGGGCTCATATTAAGGAGTGGGTGGAAGGCGAAGGGCATGG
ATGGGTGCATGTGGATATGGCCTATCCCGTGCACAATGGAGAGCGGGCGA
CGGGCTATGGCGTGAATTTGTTGGTTGGCTTGTTGGAACGGCTGTAGGGC
GGA

protein sequence of jgi.p|Nanoce1779_2|586525

>mRNA_4094-protein ID=mRNA_4094-protein|Name=jgi.p|Nanoce1779_2|586525|organism=Nannochloropsis oceanica|type=polypeptide|length=574bp
MSIRFYALDSPELKAMETNGHLLLVGTKEALEFCSPNVAFYVNCAVKVSY
LEHTGLDPPAPLLRSVTSKLSPTFDTHSCLDTWVDVDGTVVRVTLGCLPS
GPASRHNCPSKPHAVTDIVKSVASGEGTLRILITLAAADHAVALGTAVAR
AFPLYNHKSGNGKPLRKVEVVFNMTSAALATCMLVSGGITDETQKQQQQQ
QQRQQQQQVFDPSLTVLHKLQALSDGIQLCARLVDAPPNEMHTDAMVEEA
GQVLHRLQKLKTQDNVTVTVIRGEELREKGFGGLYGVGKAAEHPPALVVL
TLLPKVMGVGRGSGSSSGSISNSGKKDNTAGTSVVWVGKGIVYDTGGLSI
KTKTGMPGMKRDMGGAAAILAAFEAAVRLGYHKGPLHAILCLAENSVAAK
ATRPDDIHEMYSGKTVEINNTDAEGRLVLGDGVAYAVKQLKPAVILDMAT
LTGAQGVATGKRHAALYCNNEALEEAVVAVGRATGDLAHALPYAPEFFQS
EFRSAVADMKNSVANRENAQCSCAGQFVGAHIKEWVEGEGHGWVHVDMAY
PVHNGERATGYGVNLLVGLLERL*

mRNA from alignment at scaffold_8:822277..824029+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4094 ID=mRNA_4094|Name=jgi.p|Nanoce1779_2|586525|organism=Nannochloropsis oceanica|type=mRNA|length=1753bp|location=Sequence derived from alignment at scaffold_8:822277..824029+ (Nannochloropsis oceanica)
ACAGACACAGTCTCCTCTTAACACCATGTCGATCCGCTTCTACGCGCTCG
ACTCCCCCGAGCTCAAGGCCATGGAGACAAACGGGCACCTCCTGTTGGTG
GGCACCAAAGAAGCCTTGGAATTCTGCTCTCCAAACGTAGCTTTTTATGT
CAATTGCGCCGTCAAGGTCAGCTACCTAGAGCATACGGGCCTAGACCCTC
CTGCGCCTTTGCTTCGCTCCGTCACGAGCAAGCTGAGCCCCACCTTTGAT
ACCCATTCCTGCCTCGACACATGGGTGGACGTCGATGGCACAGTGGTCCG
TGTTACGTTGGGATGCCTTCCTTCCGGCCCCGCGTCCCGACACAACTGTC
CATCCAAGCCCCATGCCGTCACGGATATTGTCAAGAGCGTGGCAAGCGGA
GAAGGAACATTGCGAATTCTTATTACATTGGCTGCTGCCGACCACGCCGT
GGCGTTGGGCACGGCCGTGGCCAGAGCCTTCCCGCTTTACAACCACAAGA
GCGGCAACGGCAAGCCCTTGCGCAAGGTGGAGGTGGTCTTCAACATGACC
AGCGCCGCATTGGCAACTTGCATGCTGGTGAGCGGAGGCATTACGGATGA
GACGCAGAAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAACAACAAG
TCTTTGATCCTTCCTTGACGGTCCTCCACAAATTGCAGGCCTTGTCCGAC
GGCATCCAGCTTTGTGCCCGCCTCGTTGACGCCCCGCCCAATGAGATGCA
CACGGATGCCATGGTCGAGGAAGCGGGACAGGTCTTGCATCGCCTACAGA
AGCTCAAGACTCAGGATAACGTGACTGTTACCGTAATCCGAGGAGAAGAA
TTGAGAGAGAAGGGCTTTGGGGGCCTGTACGGTGTGGGCAAGGCGGCGGA
GCACCCGCCGGCACTGGTGGTGCTGACCTTGCTACCCAAGGTGATGGGGG
TTGGACGAGGGTCGGGTAGTAGTAGCGGCAGCATCAGCAACAGTGGCAAG
AAAGATAACACCGCGGGGACCAGTGTGGTGTGGGTGGGGAAGGGAATTGT
GTATGACACGGGAGGGTTAAGTATCAAAACCAAAACGGGCATGCCTGGTA
TGAAGAGGGACATGGGTGGCGCGGCTGCCATCCTGGCGGCTTTCGAAGCT
GCTGTTCGCCTTGGGTACCACAAAGGGCCTTTGCATGCTATTTTGTGCTT
GGCGGAAAATTCGGTAGCGGCGAAGGCGACGAGGCCAGATGACATTCATG
AAATGTACAGTGGCAAGACTGTGGAGATAAACAACACCGATGCCGAGGGA
AGGTTGGTTTTGGGGGATGGCGTTGCGTATGCCGTGAAGCAGTTGAAGCC
TGCCGTTATTTTGGACATGGCGACATTAACGGGCGCCCAGGGGGTGGCCA
CGGGGAAGAGGCACGCCGCTCTCTATTGTAACAATGAAGCCTTGGAAGAG
GCGGTGGTGGCGGTTGGGAGAGCGACAGGGGATCTAGCGCACGCCCTGCC
ATATGCCCCGGAATTCTTCCAGAGTGAGTTCCGCTCGGCGGTGGCGGACA
TGAAAAACAGCGTGGCCAACCGGGAGAACGCGCAGTGCTCGTGCGCGGGG
CAGTTTGTGGGGGCTCATATTAAGGAGTGGGTGGAAGGCGAAGGGCATGG
ATGGGTGCATGTGGATATGGCCTATCCCGTGCACAATGGAGAGCGGGCGA
CGGGCTATGGCGTGAATTTGTTGGTTGGCTTGTTGGAACGGCTGTAGGGC
GGA

Coding sequence (CDS) from alignment at scaffold_8:822277..824029+

>mRNA_4094 ID=mRNA_4094|Name=jgi.p|Nanoce1779_2|586525|organism=Nannochloropsis oceanica|type=CDS|length=1722bp|location=Sequence derived from alignment at scaffold_8:822277..824029+ (Nannochloropsis oceanica)
ATGTCGATCCGCTTCTACGCGCTCGACTCCCCCGAGCTCAAGGCCATGGA
GACAAACGGGCACCTCCTGTTGGTGGGCACCAAAGAAGCCTTGGAATTCT
GCTCTCCAAACGTAGCTTTTTATGTCAATTGCGCCGTCAAGGTCAGCTAC
CTAGAGCATACGGGCCTAGACCCTCCTGCGCCTTTGCTTCGCTCCGTCAC
GAGCAAGCTGAGCCCCACCTTTGATACCCATTCCTGCCTCGACACATGGG
TGGACGTCGATGGCACAGTGGTCCGTGTTACGTTGGGATGCCTTCCTTCC
GGCCCCGCGTCCCGACACAACTGTCCATCCAAGCCCCATGCCGTCACGGA
TATTGTCAAGAGCGTGGCAAGCGGAGAAGGAACATTGCGAATTCTTATTA
CATTGGCTGCTGCCGACCACGCCGTGGCGTTGGGCACGGCCGTGGCCAGA
GCCTTCCCGCTTTACAACCACAAGAGCGGCAACGGCAAGCCCTTGCGCAA
GGTGGAGGTGGTCTTCAACATGACCAGCGCCGCATTGGCAACTTGCATGC
TGGTGAGCGGAGGCATTACGGATGAGACGCAGAAGCAGCAGCAGCAGCAG
CAGCAGCGGCAGCAGCAACAACAAGTCTTTGATCCTTCCTTGACGGTCCT
CCACAAATTGCAGGCCTTGTCCGACGGCATCCAGCTTTGTGCCCGCCTCG
TTGACGCCCCGCCCAATGAGATGCACACGGATGCCATGGTCGAGGAAGCG
GGACAGGTCTTGCATCGCCTACAGAAGCTCAAGACTCAGGATAACGTGAC
TGTTACCGTAATCCGAGGAGAAGAATTGAGAGAGAAGGGCTTTGGGGGCC
TGTACGGTGTGGGCAAGGCGGCGGAGCACCCGCCGGCACTGGTGGTGCTG
ACCTTGCTACCCAAGGTGATGGGGGTTGGACGAGGGTCGGGTAGTAGTAG
CGGCAGCATCAGCAACAGTGGCAAGAAAGATAACACCGCGGGGACCAGTG
TGGTGTGGGTGGGGAAGGGAATTGTGTATGACACGGGAGGGTTAAGTATC
AAAACCAAAACGGGCATGCCTGGTATGAAGAGGGACATGGGTGGCGCGGC
TGCCATCCTGGCGGCTTTCGAAGCTGCTGTTCGCCTTGGGTACCACAAAG
GGCCTTTGCATGCTATTTTGTGCTTGGCGGAAAATTCGGTAGCGGCGAAG
GCGACGAGGCCAGATGACATTCATGAAATGTACAGTGGCAAGACTGTGGA
GATAAACAACACCGATGCCGAGGGAAGGTTGGTTTTGGGGGATGGCGTTG
CGTATGCCGTGAAGCAGTTGAAGCCTGCCGTTATTTTGGACATGGCGACA
TTAACGGGCGCCCAGGGGGTGGCCACGGGGAAGAGGCACGCCGCTCTCTA
TTGTAACAATGAAGCCTTGGAAGAGGCGGTGGTGGCGGTTGGGAGAGCGA
CAGGGGATCTAGCGCACGCCCTGCCATATGCCCCGGAATTCTTCCAGAGT
GAGTTCCGCTCGGCGGTGGCGGACATGAAAAACAGCGTGGCCAACCGGGA
GAACGCGCAGTGCTCGTGCGCGGGGCAGTTTGTGGGGGCTCATATTAAGG
AGTGGGTGGAAGGCGAAGGGCATGGATGGGTGCATGTGGATATGGCCTAT
CCCGTGCACAATGGAGAGCGGGCGACGGGCTATGGCGTGAATTTGTTGGT
TGGCTTGTTGGAACGGCTGTAG

Synonyms

Publications