jgi.p|Nanoce1779_2|586599, mRNA_4118 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586599
Unique NamemRNA_4118
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1156
Alignment locationscaffold_8:877552..878707 -

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Properties
Property NameValue
TranscriptId586685
TrackFilteredModels2
ProteinId586599
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:877552..878707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586599gene_4118Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586599mRNA_4118-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4118CDS_4118Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4118 ID=mRNA_4118|Name=jgi.p|Nanoce1779_2|586599|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp
ACAGTCATGCTGGCCCGCTCCACCCTCCTGCGACGCTCCTCCCTGCTCCT
TCGACCCCTCCCCTTGTCCTCCATCACAAGCACCACTGTCGCCCGTTCTA
TGACAGCAGGTGCCTGCGGGACCTGGGAAAAATCGTATGAATTCATTCTT
GCGGAACGAAGGGACAAGGTCGCCCTCCTGACGTTGAATCGTCCCAAGGC
CCTGAATGCCCTGTGCAATGGCATCATCCAGGACTTGATCGAGGCAACCA
CGCATATCGTGCGCGACGACAGCGTGGGCTGTATCGTCCTTACTGGCTCC
ACGAAAGCATTTGCTGCCGGTGCGGACATCAAGGAGATGAAGGATAAAAC
CTTCGTTGAGGCTTTTAGCACCAACATGTTTGAAGAGTGGGGACACATCG
CACGAGTGGCCAAGCCGATCGTGGCAGCCGTGAATGGGTATGCACTTGGA
GGAGGATGCGAGCTGATGATGATGGCTGATATTGTCGTCGCCGGGGAAAA
TGCCAAATTCGGCCAGCCGGAGATATCCCTGGGTGTGATCCCTGGTTGTG
GGGGGACACAGAGGTTGGTGCGTGCCATTGGGAAGAGCAAGGCGATGGAA
CTCGTCTTGACGGGGGGAATGATCGACGCGAAGCAGGCGGAGAAGGACGG
TTTGGTGTCCAAGGTGGTCCCCACGGACACAACTGTTCAAGTGGCTCTTG
ACATGGCGAAGACCATCGCCTCGTTTTCACTACCTGTGACCGCGGCCGCC
AAGGAAACCGTTAACTCGGCCTTTGAATTAAACCTCGCGGAGGGCTTAAG
GTTTGAGAGGAGGGTTTTTCATAGTCTGTTTGCATTGCAGGACCAGAAAG
AGGGGATGAGGGCGTTCGTGGAGAAGAGGAAGCCCAAGTTTACTAATGCA
TAGATCGAGAGGGGGGAAAGGAGCGAGAGACGGAGAGAGGGAAGGTTAGC
GTGTACTTAGCACGTCCCGACCAATCAATTTAGCTTACGGTTGAAGAGAA
GGATAGAAGAATAGGAGGACTGAAGGAATGGAGAGATGTTTGAGTGTGAG
TATGTGTTGTGGAGTCCGAGTGGGGCGACGAGAGGAAAAGAAAAAGAAAA
AGACAGACAAGATACGAGGATGACATGGAGGGACAAAAGGCTAAACGCTA
CACGGA
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protein sequence of jgi.p|Nanoce1779_2|586599

>mRNA_4118-protein ID=mRNA_4118-protein|Name=jgi.p|Nanoce1779_2|586599|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MLARSTLLRRSSLLLRPLPLSSITSTTVARSMTAGACGTWEKSYEFILAE
RRDKVALLTLNRPKALNALCNGIIQDLIEATTHIVRDDSVGCIVLTGSTK
AFAAGADIKEMKDKTFVEAFSTNMFEEWGHIARVAKPIVAAVNGYALGGG
CELMMMADIVVAGENAKFGQPEISLGVIPGCGGTQRLVRAIGKSKAMELV
LTGGMIDAKQAEKDGLVSKVVPTDTTVQVALDMAKTIASFSLPVTAAAKE
TVNSAFELNLAEGLRFERRVFHSLFALQDQKEGMRAFVEKRKPKFTNA*
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mRNA from alignment at scaffold_8:877552..878707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4118 ID=mRNA_4118|Name=jgi.p|Nanoce1779_2|586599|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp|location=Sequence derived from alignment at scaffold_8:877552..878707- (Nannochloropsis oceanica)
ACAGTCATGCTGGCCCGCTCCACCCTCCTGCGACGCTCCTCCCTGCTCCT
TCGACCCCTCCCCTTGTCCTCCATCACAAGCACCACTGTCGCCCGTTCTA
TGACAGCAGGTGCCTGCGGGACCTGGGAAAAATCGTATGAATTCATTCTT
GCGGAACGAAGGGACAAGGTCGCCCTCCTGACGTTGAATCGTCCCAAGGC
CCTGAATGCCCTGTGCAATGGCATCATCCAGGACTTGATCGAGGCAACCA
CGCATATCGTGCGCGACGACAGCGTGGGCTGTATCGTCCTTACTGGCTCC
ACGAAAGCATTTGCTGCCGGTGCGGACATCAAGGAGATGAAGGATAAAAC
CTTCGTTGAGGCTTTTAGCACCAACATGTTTGAAGAGTGGGGACACATCG
CACGAGTGGCCAAGCCGATCGTGGCAGCCGTGAATGGGTATGCACTTGGA
GGAGGATGCGAGCTGATGATGATGGCTGATATTGTCGTCGCCGGGGAAAA
TGCCAAATTCGGCCAGCCGGAGATATCCCTGGGTGTGATCCCTGGTTGTG
GGGGGACACAGAGGTTGGTGCGTGCCATTGGGAAGAGCAAGGCGATGGAA
CTCGTCTTGACGGGGGGAATGATCGACGCGAAGCAGGCGGAGAAGGACGG
TTTGGTGTCCAAGGTGGTCCCCACGGACACAACTGTTCAAGTGGCTCTTG
ACATGGCGAAGACCATCGCCTCGTTTTCACTACCTGTGACCGCGGCCGCC
AAGGAAACCGTTAACTCGGCCTTTGAATTAAACCTCGCGGAGGGCTTAAG
GTTTGAGAGGAGGGTTTTTCATAGTCTGTTTGCATTGCAGGACCAGAAAG
AGGGGATGAGGGCGTTCGTGGAGAAGAGGAAGCCCAAGTTTACTAATGCA
TAGATCGAGAGGGGGGAAAGGAGCGAGAGACGGAGAGAGGGAAGGTTAGC
GTGTACTTAGCACGTCCCGACCAATCAATTTAGCTTACGGTTGAAGAGAA
GGATAGAAGAATAGGAGGACTGAAGGAATGGAGAGATGTTTGAGTGTGAG
TATGTGTTGTGGAGTCCGAGTGGGGCGACGAGAGGAAAAGAAAAAGAAAA
AGACAGACAAGATACGAGGATGACATGGAGGGACAAAAGGCTAAACGCTA
CACGGA
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Coding sequence (CDS) from alignment at scaffold_8:877552..878707-

>mRNA_4118 ID=mRNA_4118|Name=jgi.p|Nanoce1779_2|586599|organism=Nannochloropsis oceanica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_8:877552..878707- (Nannochloropsis oceanica)
ATGCTGGCCCGCTCCACCCTCCTGCGACGCTCCTCCCTGCTCCTTCGACC
CCTCCCCTTGTCCTCCATCACAAGCACCACTGTCGCCCGTTCTATGACAG
CAGGTGCCTGCGGGACCTGGGAAAAATCGTATGAATTCATTCTTGCGGAA
CGAAGGGACAAGGTCGCCCTCCTGACGTTGAATCGTCCCAAGGCCCTGAA
TGCCCTGTGCAATGGCATCATCCAGGACTTGATCGAGGCAACCACGCATA
TCGTGCGCGACGACAGCGTGGGCTGTATCGTCCTTACTGGCTCCACGAAA
GCATTTGCTGCCGGTGCGGACATCAAGGAGATGAAGGATAAAACCTTCGT
TGAGGCTTTTAGCACCAACATGTTTGAAGAGTGGGGACACATCGCACGAG
TGGCCAAGCCGATCGTGGCAGCCGTGAATGGGTATGCACTTGGAGGAGGA
TGCGAGCTGATGATGATGGCTGATATTGTCGTCGCCGGGGAAAATGCCAA
ATTCGGCCAGCCGGAGATATCCCTGGGTGTGATCCCTGGTTGTGGGGGGA
CACAGAGGTTGGTGCGTGCCATTGGGAAGAGCAAGGCGATGGAACTCGTC
TTGACGGGGGGAATGATCGACGCGAAGCAGGCGGAGAAGGACGGTTTGGT
GTCCAAGGTGGTCCCCACGGACACAACTGTTCAAGTGGCTCTTGACATGG
CGAAGACCATCGCCTCGTTTTCACTACCTGTGACCGCGGCCGCCAAGGAA
ACCGTTAACTCGGCCTTTGAATTAAACCTCGCGGAGGGCTTAAGGTTTGA
GAGGAGGGTTTTTCATAGTCTGTTTGCATTGCAGGACCAGAAAGAGGGGA
TGAGGGCGTTCGTGGAGAAGAGGAAGCCCAAGTTTACTAATGCATAG
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Synonyms
Publications