jgi.p|Nanoce1779_2|586787, mRNA_4167 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586787
Unique Name	mRNA_4167
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1394
Alignment location	scaffold_8:1006672..1008065 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586873
Track	FilteredModels2
ProteinId	586787

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:1006672..1008065 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586787	gene_4167	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586787	mRNA_4167-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4167	CDS_4167	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:1006672..1008065+
coding sequence from alignment at scaffold_8:1006672..1008065+

mRNA sequence

>mRNA_4167 ID=mRNA_4167|Name=jgi.p|Nanoce1779_2|586787|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp
ACAGCCAGGCTTTCCTGCCTCCATGCATCAATCCAGCAAGCACACAATGC
CTTCACCACCCTCGACCTCGGGGAGACTCGCAATGAAAGGGAGGAGAAGA
TTACGATCCATGCCACCTTCCATTTTCGCTGTCATTGCCTTTTTCATAGT
CCTTTTCTGCATCTCCACGACCGCCTTCGTGCTTCCGTCACCCTCCAAAT
TCCTAGCTTCCCCCCCTGCGACACCATCCCAGCAGAACGATCTTGGCCCA
AACCCCTCTCTTCTGACTGCGTTGCGCCGCCTCCTTCAAAGTACCTCCTC
TCTCCTCCTCCTCTCTAGCGTCCCTTCTCTTGCCTTCACCGTATTTCCTG
CAACCTCCGCAGCCGTGCCAGCTCCTCAAACTACCACCATCATAGCAGAT
ACTCGAGAATCAGTAGCAGCAAATCTCCCCGCAGAAGTAATCGCCACCGC
CATTGTCAGCCTGGGCAAGAACGCTAACGTCGACCGTCTCCTCCTTTCTT
CTCCCAGCACCAGCACCACCAGCAGCAGTGTCGGTGAAAATAGTGTCTAT
CAAAAACAAGAGGCATCTCCCGCTCTTTACGTCACCGCTCGGGTTGGAAG
CCGGGGTCGCGTCCTCGCCTCCATCAAGCTGCCATTACAATCCCTCCCCT
CTCCTACATTTCCAGCCTTGGTCCAAATTAAAGAAGGGGACATATATGCG
GAAACCCCCGAAGTCCGACATGCCATTGCACGAGAGATCCAAACCAGTGA
CCTTGTCCTCTCTGCTCGTTTAGACCAAGACGGAAGAGCTGCTACCCGAG
GCCCCCAAGATTTGGTAGGACAAGCCACTCTCTATAAATTCAAGTCACTA
GATTCGGCACAGTGGTCCAGGGCGGACATTGTCTTGACGGGCCGAGGGGC
GTTCGGGGAGTTTGTCACGGGCAGTGGGAAGGGGAAATGAGATGAAAGAG
GAAGAGAGACAGAGAGTATAGGAAGGAAAAGCAGTGATTTCCAAAAACGG
ATTGTAATTGTGGACTTGATAGCTTATGCTTTTTTTTCTTTCCTGGGACC
CCATGCATGCGAAGAACCAGGAGTAAAAGATTTTGGGGGCGGAGGTGGGC
GGAGGAGAGCATGAAGGATGGCCCATGTGGATGGCGTCGGAGACATGGCG
ACCCTGACACCTCAACAGGTGCCTTACATTACCTTAATCAACTTGAGGGT
GAGCGAAGCTGCGTTTGAGACACGTGTATGATTCATTTCCTTCTAATGGT
TTGCATTCTTGTGAAGGAGACGCGCGAGGCGGGGAGGTATGTTCTATTCG
GCTTGGACAAAGTCCCCTCTCGTAAATCAACAAGATCACTCATTTCTCGC
ACACATATATGTACCCTACATAGCTCAAGCATGAGAAGACAAAG

protein sequence of jgi.p|Nanoce1779_2|586787

>mRNA_4167-protein ID=mRNA_4167-protein|Name=jgi.p|Nanoce1779_2|586787|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MHQSSKHTMPSPPSTSGRLAMKGRRRLRSMPPSIFAVIAFFIVLFCISTT
AFVLPSPSKFLASPPATPSQQNDLGPNPSLLTALRRLLQSTSSLLLLSSV
PSLAFTVFPATSAAVPAPQTTTIIADTRESVAANLPAEVIATAIVSLGKN
ANVDRLLLSSPSTSTTSSSVGENSVYQKQEASPALYVTARVGSRGRVLAS
IKLPLQSLPSPTFPALVQIKEGDIYAETPEVRHAIAREIQTSDLVLSARL
DQDGRAATRGPQDLVGQATLYKFKSLDSAQWSRADIVLTGRGAFGEFVTG
SGKGK*

mRNA from alignment at scaffold_8:1006672..1008065+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4167 ID=mRNA_4167|Name=jgi.p|Nanoce1779_2|586787|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp|location=Sequence derived from alignment at scaffold_8:1006672..1008065+ (Nannochloropsis oceanica)
ACAGCCAGGCTTTCCTGCCTCCATGCATCAATCCAGCAAGCACACAATGC
CTTCACCACCCTCGACCTCGGGGAGACTCGCAATGAAAGGGAGGAGAAGA
TTACGATCCATGCCACCTTCCATTTTCGCTGTCATTGCCTTTTTCATAGT
CCTTTTCTGCATCTCCACGACCGCCTTCGTGCTTCCGTCACCCTCCAAAT
TCCTAGCTTCCCCCCCTGCGACACCATCCCAGCAGAACGATCTTGGCCCA
AACCCCTCTCTTCTGACTGCGTTGCGCCGCCTCCTTCAAAGTACCTCCTC
TCTCCTCCTCCTCTCTAGCGTCCCTTCTCTTGCCTTCACCGTATTTCCTG
CAACCTCCGCAGCCGTGCCAGCTCCTCAAACTACCACCATCATAGCAGAT
ACTCGAGAATCAGTAGCAGCAAATCTCCCCGCAGAAGTAATCGCCACCGC
CATTGTCAGCCTGGGCAAGAACGCTAACGTCGACCGTCTCCTCCTTTCTT
CTCCCAGCACCAGCACCACCAGCAGCAGTGTCGGTGAAAATAGTGTCTAT
CAAAAACAAGAGGCATCTCCCGCTCTTTACGTCACCGCTCGGGTTGGAAG
CCGGGGTCGCGTCCTCGCCTCCATCAAGCTGCCATTACAATCCCTCCCCT
CTCCTACATTTCCAGCCTTGGTCCAAATTAAAGAAGGGGACATATATGCG
GAAACCCCCGAAGTCCGACATGCCATTGCACGAGAGATCCAAACCAGTGA
CCTTGTCCTCTCTGCTCGTTTAGACCAAGACGGAAGAGCTGCTACCCGAG
GCCCCCAAGATTTGGTAGGACAAGCCACTCTCTATAAATTCAAGTCACTA
GATTCGGCACAGTGGTCCAGGGCGGACATTGTCTTGACGGGCCGAGGGGC
GTTCGGGGAGTTTGTCACGGGCAGTGGGAAGGGGAAATGAGATGAAAGAG
GAAGAGAGACAGAGAGTATAGGAAGGAAAAGCAGTGATTTCCAAAAACGG
ATTGTAATTGTGGACTTGATAGCTTATGCTTTTTTTTCTTTCCTGGGACC
CCATGCATGCGAAGAACCAGGAGTAAAAGATTTTGGGGGCGGAGGTGGGC
GGAGGAGAGCATGAAGGATGGCCCATGTGGATGGCGTCGGAGACATGGCG
ACCCTGACACCTCAACAGGTGCCTTACATTACCTTAATCAACTTGAGGGT
GAGCGAAGCTGCGTTTGAGACACGTGTATGATTCATTTCCTTCTAATGGT
TTGCATTCTTGTGAAGGAGACGCGCGAGGCGGGGAGGTATGTTCTATTCG
GCTTGGACAAAGTCCCCTCTCGTAAATCAACAAGATCACTCATTTCTCGC
ACACATATATGTACCCTACATAGCTCAAGCATGAGAAGACAAAG

Coding sequence (CDS) from alignment at scaffold_8:1006672..1008065+

>mRNA_4167 ID=mRNA_4167|Name=jgi.p|Nanoce1779_2|586787|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_8:1006672..1008065+ (Nannochloropsis oceanica)
ATGCATCAATCCAGCAAGCACACAATGCCTTCACCACCCTCGACCTCGGG
GAGACTCGCAATGAAAGGGAGGAGAAGATTACGATCCATGCCACCTTCCA
TTTTCGCTGTCATTGCCTTTTTCATAGTCCTTTTCTGCATCTCCACGACC
GCCTTCGTGCTTCCGTCACCCTCCAAATTCCTAGCTTCCCCCCCTGCGAC
ACCATCCCAGCAGAACGATCTTGGCCCAAACCCCTCTCTTCTGACTGCGT
TGCGCCGCCTCCTTCAAAGTACCTCCTCTCTCCTCCTCCTCTCTAGCGTC
CCTTCTCTTGCCTTCACCGTATTTCCTGCAACCTCCGCAGCCGTGCCAGC
TCCTCAAACTACCACCATCATAGCAGATACTCGAGAATCAGTAGCAGCAA
ATCTCCCCGCAGAAGTAATCGCCACCGCCATTGTCAGCCTGGGCAAGAAC
GCTAACGTCGACCGTCTCCTCCTTTCTTCTCCCAGCACCAGCACCACCAG
CAGCAGTGTCGGTGAAAATAGTGTCTATCAAAAACAAGAGGCATCTCCCG
CTCTTTACGTCACCGCTCGGGTTGGAAGCCGGGGTCGCGTCCTCGCCTCC
ATCAAGCTGCCATTACAATCCCTCCCCTCTCCTACATTTCCAGCCTTGGT
CCAAATTAAAGAAGGGGACATATATGCGGAAACCCCCGAAGTCCGACATG
CCATTGCACGAGAGATCCAAACCAGTGACCTTGTCCTCTCTGCTCGTTTA
GACCAAGACGGAAGAGCTGCTACCCGAGGCCCCCAAGATTTGGTAGGACA
AGCCACTCTCTATAAATTCAAGTCACTAGATTCGGCACAGTGGTCCAGGG
CGGACATTGTCTTGACGGGCCGAGGGGCGTTCGGGGAGTTTGTCACGGGC
AGTGGGAAGGGGAAATGA

Synonyms

Publications