jgi.p|Nanoce1779_2|629552, mRNA_3813 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629552
Unique Name	mRNA_3813
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1523
Alignment location	scaffold_8:74296..76138 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629638
Track	FilteredModels2
ProteinId	629552

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:74296..76138 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629552	gene_3813	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629552	mRNA_3813-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3813	CDS_3813	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:74296..76138-
coding sequence from alignment at scaffold_8:74296..76138-

mRNA sequence

>mRNA_3813 ID=mRNA_3813|Name=jgi.p|Nanoce1779_2|629552|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp
AGTAGGCCAGGCACCATGCCGCCCGCTCCTCTTCCTCCTCATCCTTCCAC
TGCTCCTCTTCCTCCTCATCCTTCTACTGCTCCTCCTCCTCCACCTCCCC
TCCGCCCTGGCTGGACCCCAGCCCTCGCTCAACGGTTCCTCAGGCACTGC
CTCGAAGAGAAGCATATGGCCATGGAGTTGGCACCCTCGGTCGTGGAACA
TGTCGGCTGGATACTTCGAGGCTTACGCGCTATTCAGCAGCCGTACGAGC
CAATCTCCTCCTCTTTCCCTACTGACTTTGACAGTCACAAGGATCTATAT
ACATTCTTCCTCCGCCTCCGCACCTATAACAATAGCAGTAGCAGCAGTCA
GAGTGCCACCGCCGTCTACCCCTCTCATACTCTCGCCCGTGCAAATAAAA
AGGCGACGCAGGACTGCGAGAAGTGTAATCTTGACGAGAAGACTGAGAAG
GAGGAAGCCATTTACGCGTTCGTGGACAAAGAGGGGGTTGGGAGGATGCG
ACGACGACGTCACTACATGCTGCTCAAGCGATTCGCCGACGGTTACGCTG
GTCGAGAGAACGAGGAGGTGGGGGAAGGGGAGATGGAGGATGAACGAGGA
CAGGAGGATGGTAGGGGGGAAAATAAATTGAAGAAAGGGCTGCAAGAGAG
CGTCAGCCAGGCTACCGTGAGTGATAAGGGGATGGTTGTGGAGAAGGAGG
GCACTGATGGGGAGGTCGCGGAGGAGGTAGAGGGCAAAGAGACCGTGAAG
GATGAGGGGAAGAAAGAGGAGGAGGAGATGTCGGCGCGGCCCATCTGTTT
TTTCTCGAAAGGCACTAAGTTTGACGCTAGTGACGATGGTATCAAGGGTG
GTGCTGACGCTGGTGTTGGTGGAGTAAGCACGGGAGGTGAGGACCCCAAG
AGGGGGGACAAAGACAAACAGGTGGAGCAGCAGGAGCAGCAGCAGGGGCC
AATGGAGGAAGAGAAGGAAGGAGATGGTCGTCGTAGTCGCGATTGGTGCC
TTCAGGATTGCACAGACAGTACCTGTGTAGCGCTATGGCTGGAAGGGGAG
GAGGAGGTGGGGGAGAAGGGGGGAGGTGAAGGGAGGGGCATGGGAGGAAG
GAAGGTCGTTGGAGATAAAAAGAAAAGGATGAGTGAGGAGGCGCAGTGAC
GGTAGAATAAGGCAAGAAAGTTTAGGTTGGTATCCATATCACTTCTGCTA
CCTCCACCAGCAACAATGGGATAAGCGACAGATGTGTCGCAAGGGGTAAG
ACGGGAATGCTAGCATCCAAGGGAAAAGGCGGAGAGGAAGGAGATGAAGG
CCATCAGAGGATGGTCACGACGCCGAGATGAATTGTCTGTGGGAGGCAAC
AAGAAAGTGGACTGAGGGGAAAGAAAAGAATGTTTAGTGACAAAATCATA
GCGGCTGTTGCTGGGGGGGTGGAGTAAGAAGGAAGAAGCACAACGAAACA
ACCAGGCCAAGCGAGCAATGTATGCCTTTGTGTATACGTCTACATGTCGA
CGGAAAAAGAATGAAGTACAAAT

protein sequence of jgi.p|Nanoce1779_2|629552

>mRNA_3813-protein ID=mRNA_3813-protein|Name=jgi.p|Nanoce1779_2|629552|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MPPAPLPPHPSTAPLPPHPSTAPPPPPPLRPGWTPALAQRFLRHCLEEKH
MAMELAPSVVEHVGWILRGLRAIQQPYEPISSSFPTDFDSHKDLYTFFLR
LRTYNNSSSSSQSATAVYPSHTLARANKKATQDCEKCNLDEKTEKEEAIY
AFVDKEGVGRMRRRRHYMLLKRFADGYAGRENEEVGEGEMEDERGQEDGR
GENKLKKGLQESVSQATVSDKGMVVEKEGTDGEVAEEVEGKETVKDEGKK
EEEEMSARPICFFSKGTKFDASDDGIKGGADAGVGGVSTGGEDPKRGDKD
KQVEQQEQQQGPMEEEKEGDGRRSRDWCLQDCTDSTCVALWLEGEEEVGE
KGGGEGRGMGGRKVVGDKKKRMSEEAQ*

mRNA from alignment at scaffold_8:74296..76138-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3813 ID=mRNA_3813|Name=jgi.p|Nanoce1779_2|629552|organism=Nannochloropsis oceanica|type=mRNA|length=1843bp|location=Sequence derived from alignment at scaffold_8:74296..76138- (Nannochloropsis oceanica)
AGTAGGCCAGGCACCATGCCGCCCGCTCCTCTTCCTCCTCATCCTTCCAC
TGCTCCTCTTCCTCCTCATCCTTCTACTGCTCCTCCTCCTCCACCTCCCC
TCCGCCCTGGCTGGACCCCAGCCCTCGCTCAACGGTTCCTCAGGCACTGC
CTCGAAGAGAAGCATATGGCCATGGAGTTGGCACCCTCGGTCGTGGAACA
TGTCGGCTGGATACTTCGAGTAAGTGTGATACAGAGGGAAGCGAGACGCT
GAAGAGAAAAGAAGTAGCCAAACTTTAAGAACTCATTTTCCTCCACTCTA
AATGGATACCTGAATATACAGGGCTTACGCGCTATTCAGCAGCCGTACGA
GCCAATCTCCTCCTCTTTCCCTACTGACTTTGACAGTCACAAGGATCTAT
ATACATTCTTCCTCCGCCTCCGCACCTATAACAATAGCAGTAGCAGCAGT
CAGAGTGCCACCGCCGTCTACCCCTCTCATACTCTCGCCCGTGCAAATAA
AAAGGCGACGCAGGACTGCGAGAAGTGTAATCTTGACGAGAAGACTGAGA
AGGAGGAAGCCATTTACGCGTTCGTGGACAAAGAGGGGGTTGGGAGGATG
CGACGACGACGGTACGTACGTTGGTAGGGTGGAAAGGGAGGGAAGCATGG
GAGGGAAGGAAGGAGGAGTATTGGATTCGTGCCTAGAGAGATCGAAGGTG
GAAAGCAAAGCTTGACGGATCGTAAAGGCGCAAGGAATAGTAATAATGGC
GCGATCACTCAGTCCTCTCCTCTCCTTCTAACTTTCCCATTACTTCCTAT
TTCTTTCTTATTTCTCTCTCTTCCTTAAGTCACTACATGCTGCTCAAGCG
ATTCGCCGACGGTTACGCTGGTCGAGAGAACGAGGAGGTGGGGGAAGGGG
AGATGGAGGATGAACGAGGACAGGAGGATGGTAGGGGGGAAAATAAATTG
AAGAAAGGGCTGCAAGAGAGCGTCAGCCAGGCTACCGTGAGTGATAAGGG
GATGGTTGTGGAGAAGGAGGGCACTGATGGGGAGGTCGCGGAGGAGGTAG
AGGGCAAAGAGACCGTGAAGGATGAGGGGAAGAAAGAGGAGGAGGAGATG
TCGGCGCGGCCCATCTGTTTTTTCTCGAAAGGCACTAAGTTTGACGCTAG
TGACGATGGTATCAAGGGTGGTGCTGACGCTGGTGTTGGTGGAGTAAGCA
CGGGAGGTGAGGACCCCAAGAGGGGGGACAAAGACAAACAGGTGGAGCAG
CAGGAGCAGCAGCAGGGGCCAATGGAGGAAGAGAAGGAAGGAGATGGTCG
TCGTAGTCGCGATTGGTGCCTTCAGGATTGCACAGACAGTACCTGTGTAG
CGCTATGGCTGGAAGGGGAGGAGGAGGTGGGGGAGAAGGGGGGAGGTGAA
GGGAGGGGCATGGGAGGAAGGAAGGTCGTTGGAGATAAAAAGAAAAGGAT
GAGTGAGGAGGCGCAGTGACGGTAGAATAAGGCAAGAAAGTTTAGGTTGG
TATCCATATCACTTCTGCTACCTCCACCAGCAACAATGGGATAAGCGACA
GATGTGTCGCAAGGGGTAAGACGGGAATGCTAGCATCCAAGGGAAAAGGC
GGAGAGGAAGGAGATGAAGGCCATCAGAGGATGGTCACGACGCCGAGATG
AATTGTCTGTGGGAGGCAACAAGAAAGTGGACTGAGGGGAAAGAAAAGAA
TGTTTAGTGACAAAATCATAGCGGCTGTTGCTGGGGGGGTGGAGTAAGAA
GGAAGAAGCACAACGAAACAACCAGGCCAAGCGAGCAATGTATGCCTTTG
TGTATACGTCTACATGTCGACGGAAAAAGAATGAAGTACAAAT

Coding sequence (CDS) from alignment at scaffold_8:74296..76138-

>mRNA_3813 ID=mRNA_3813|Name=jgi.p|Nanoce1779_2|629552|organism=Nannochloropsis oceanica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_8:74296..76138- (Nannochloropsis oceanica)
TCACTACATGCTGCTCAAGCGATTCGCCGACGGTTACGCTGGTCGAGAGA
ACGAGGAGGTGGGGGAAGGGGAGATGGAGGATGAACGAGGACAGGAGGAT
GGTAGGGGGGAAAATAAATTGAAGAAAGGGCTGCAAGAGAGCGTCAGCCA
GGCTACCGTGAGTGATAAGGGGATGGTTGTGGAGAAGGAGGGCACTGATG
GGGAGGTCGCGGAGGAGGTAGAGGGCAAAGAGACCGTGAAGGATGAGGGG
AAGAAAGAGGAGGAGGAGATGTCGGCGCGGCCCATCTGTTTTTTCTCGAA
AGGCACTAAGTTTGACGCTAGTGACGATGGTATCAAGGGTGGTGCTGACG
CTGGTGTTGGTGGAGTAAGCACGGGAGGTGAGGACCCCAAGAGGGGGGAC
AAAGACAAACAGGTGGAGCAGCAGGAGCAGCAGCAGGGGCCAATGGAGGA
AGAGAAGGAAGGAGATGGTCGTCGTAGTCGCGATTGGTGCCTTCAGGATT
GCACAGACAGTACCTGTGTAGCGCTATGGCTGGAAGGGGAGGAGGAGGTG
GGGGAGAAGGGGGGAGGTGAAGGGAGGGGCATGGGAGGAAGGAAGGTCGT
TGGAGATAAAAAGAAAAGGATGAGTGAGGAGGCGCAGTGAGGCTTACGCG
CTATTCAGCAGCCGTACGAGCCAATCTCCTCCTCTTTCCCTACTGACTTT
GACAGTCACAAGGATCTATATACATTCTTCCTCCGCCTCCGCACCTATAA
CAATAGCAGTAGCAGCAGTCAGAGTGCCACCGCCGTCTACCCCTCTCATA
CTCTCGCCCGTGCAAATAAAAAGGCGACGCAGGACTGCGAGAAGTGTAAT
CTTGACGAGAAGACTGAGAAGGAGGAAGCCATTTACGCGTTCGTGGACAA
AGAGGGGGTTGGGAGGATGCGACGACGACGATGCCGCCCGCTCCTCTTCC
TCCTCATCCTTCCACTGCTCCTCTTCCTCCTCATCCTTCTACTGCTCCTC
CTCCTCCACCTCCCCTCCGCCCTGGCTGGACCCCAGCCCTCGCTCAACGG
TTCCTCAGGCACTGCCTCGAAGAGAAGCATATGGCCATGGAGTTGGCACC
CTCGGTCGTGGAACATGTCGGCTGGATACTTCGATCACTACATGCTGCTC
AAGCGATTCGCCGACGGTTACGCTGGTCGAGAGAACGAGGAGGTGGGGGA
AGGGGAGATGGAGGATGAACGAGGACAGGAGGATGGTAGGGGGGAAAATA
AATTGAAGAAAGGGCTGCAAGAGAGCGTCAGCCAGGCTACCGTGAGTGAT
AAGGGGATGGTTGTGGAGAAGGAGGGCACTGATGGGGAGGTCGCGGAGGA
GGTAGAGGGCAAAGAGACCGTGAAGGATGAGGGGAAGAAAGAGGAGGAGG
AGATGTCGGCGCGGCCCATCTGTTTTTTCTCGAAAGGCACTAAGTTTGAC
GCTAGTGACGATGGTATCAAGGGTGGTGCTGACGCTGGTGTTGGTGGAGT
AAGCACGGGAGGTGAGGACCCCAAGAGGGGGGACAAAGACAAACAGGTGG
AGCAGCAGGAGCAGCAGCAGGGGCCAATGGAGGAAGAGAAGGAAGGAGAT
GGTCGTCGTAGTCGCGATTGGTGCCTTCAGGATTGCACAGACAGTACCTG
TGTAGCGCTATGGCTGGAAGGGGAGGAGGAGGTGGGGGAGAAGGGGGGAG
GTGAAGGGAGGGGCATGGGAGGAAGGAAGGTCGTTGGAGATAAAAAGAAA
AGGATGAGTGAGGAGGCGCAGTGAGGCTTACGCGCTATTCAGCAGCCGTA
CGAGCCAATCTCCTCCTCTTTCCCTACTGACTTTGACAGTCACAAGGATC
TATATACATTCTTCCTCCGCCTCCGCACCTATAACAATAGCAGTAGCAGC
AGTCAGAGTGCCACCGCCGTCTACCCCTCTCATACTCTCGCCCGTGCAAA
TAAAAAGGCGACGCAGGACTGCGAGAAGTGTAATCTTGACGAGAAGACTG
AGAAGGAGGAAGCCATTTACGCGTTCGTGGACAAAGAGGGGGTTGGGAGG
ATGCGACGACGACGATGCCGCCCGCTCCTCTTCCTCCTCATCCTTCCACT
GCTCCTCTTCCTCCTCATCCTTCTACTGCTCCTCCTCCTCCACCTCCCCT
CCGCCCTGGCTGGACCCCAGCCCTCGCTCAACGGTTCCTCAGGCACTGCC
TCGAAGAGAAGCATATGGCCATGGAGTTGGCACCCTCGGTCGTGGAACAT
GTCGGCTGGATACTTCGATCACTACATGCTGCTCAAGCGATTCGCCGACG
GTTACGCTGGTCGAGAGAACGAGGAGGTGGGGGAAGGGGAGATGGAGGAT
GAACGAGGACAGGAGGATGGTAGGGGGGAAAATAAATTGAAGAAAGGGCT
GCAAGAGAGCGTCAGCCAGGCTACCGTGAGTGATAAGGGGATGGTTGTGG
AGAAGGAGGGCACTGATGGGGAGGTCGCGGAGGAGGTAGAGGGCAAAGAG
ACCGTGAAGGATGAGGGGAAGAAAGAGGAGGAGGAGATGTCGGCGCGGCC
CATCTGTTTTTTCTCGAAAGGCACTAAGTTTGACGCTAGTGACGATGGTA
TCAAGGGTGGTGCTGACGCTGGTGTTGGTGGAGTAAGCACGGGAGGTGAG
GACCCCAAGAGGGGGGACAAAGACAAACAGGTGGAGCAGCAGGAGCAGCA
GCAGGGGCCAATGGAGGAAGAGAAGGAAGGAGATGGTCGTCGTAGTCGCG
ATTGGTGCCTTCAGGATTGCACAGACAGTACCTGTGTAGCGCTATGGCTG
GAAGGGGAGGAGGAGGTGGGGGAGAAGGGGGGAGGTGAAGGGAGGGGCAT
GGGAGGAAGGAAGGTCGTTGGAGATAAAAAGAAAAGGATGAGTGAGGAGG
CGCAGTGAGGCTTACGCGCTATTCAGCAGCCGTACGAGCCAATCTCCTCC
TCTTTCCCTACTGACTTTGACAGTCACAAGGATCTATATACATTCTTCCT
CCGCCTCCGCACCTATAACAATAGCAGTAGCAGCAGTCAGAGTGCCACCG
CCGTCTACCCCTCTCATACTCTCGCCCGTGCAAATAAAAAGGCGACGCAG
GACTGCGAGAAGTGTAATCTTGACGAGAAGACTGAGAAGGAGGAAGCCAT
TTACGCGTTCGTGGACAAAGAGGGGGTTGGGAGGATGCGACGACGACGAT
GCCGCCCGCTCCTCTTCCTCCTCATCCTTCCACTGCTCCTCTTCCTCCTC
ATCCTTCTACTGCTCCTCCTCCTCCACCTCCCCTCCGCCCTGGCTGGACC
CCAGCCCTCGCTCAACGGTTCCTCAGGCACTGCCTCGAAGAGAAGCATAT
GGCCATGGAGTTGGCACCCTCGGTCGTGGAACATGTCGGCTGGATACTTC
GA

Synonyms

Publications