jgi.p|Nanoce1779_2|443477, mRNA_4802 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|443477
Unique Name	mRNA_4802
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2364
Alignment location	scaffold_9:655906..658269 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	443563
Track	FilteredModels2
ProteinId	443477

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:655906..658269 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|443477	gene_4802	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|443477	mRNA_4802-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4802	CDS_4802	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:655906..658269+
coding sequence from alignment at scaffold_9:655906..658269+

mRNA sequence

>mRNA_4802 ID=mRNA_4802|Name=jgi.p|Nanoce1779_2|443477|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
CTCCCCACCTCCTTCCTATTCCACGCCTTGTATTGAACCCCATCCCCCCC
TTACACAGGCAGCGGTGTACAACGGCAGAAGCAAAAGGTCAAGTCTTGGA
CGAGATTGCACGAGCCGCACCAGATCTCCCGCCATGATGCTCTGAAAAAG
GCAGCGCCGCACCATCATCGTAAGATTAAAAATTAAAAAGCGGACCCCCG
TAGGGAGCGAAGGGAAGGAGTGTCAGGGTGGTGGTGATTCTAGTGCCGGC
ATCATTCTACGAGCAGCACACGTACCCTGCGCCTTCATCACGGATTCAGT
GCGCTCAACAAGCTGCCGCTGCAAGCTGCCGCAGCGGTAGGCCTCGTCTG
CTCAGAGTAGCCGCCACCAGACAATTTCTTAGCCTTTCCACGCACTCCGA
TTACACACCAGGCATACCATGATCGACGAGCCCAAGAATTCAACCCCGAC
CCCCACCAACGGCATCAACACGAACAATGACCTAATCCTCCGATTGCTTC
CTTCCTTCCCCGCCACCCGCTCCGCTGATGACGAGCTTCCCCCACATCTC
TTCCCCCTCTCCTCCTCCTTTCAGCCTCCCATCCCTTCCTCCTCTTCCTC
TGCCTTTCGGGGCACCAAAAGCCCCCCAAAAACCTTGCATTGGGCCATGG
CAGGACTCATTCTCTTCTCTTTTACTGCGCCGGGTGCCTTGGTCAGCGTT
CCCTTTGCGATTGGTACCACTGGGTATGTATTGGGCATGTTGGTGTTGTG
TCTTTTTACTGCAGCTACCTGTGGTGGGTGCTTGATGCTCTTGGAGATTT
ATCTTGCGCATCCGCACTGTCAGAACCTGCCAGAACTGGGATCGGTGGCG
ATTGGTGGGAATGGTAGGTGGGGAAGACGGATGGCAGCGACGGCGCAGTT
GTGTAATTTTGTGGGGTTCCTGCCTGTGTCAATGACGATTAATGCATTTG
CGTTGCAAGGCACGTTGGGGGTGAACCCGGAGGACTCCTGTTTGGACGTG
TATATATTGTTGATCAGCCTCGTCTGCCTCTTGACGACACAAGCCCGTGT
TCTGACAAACACCCAATCACTGGCGTTGCTCTCCCTCGGTGCTATTCTGG
CCGCCGGTGGGATCCAACTAGGCATCGCTTTCTCCCCTTCCCTCGTGCCC
TCCCCCTCCCCCTCCCCCTCCGCCAAAACTGCTGCCCGCTTCTTCGGCCA
CCCCCTCCTCTCCTCCACCATCCTGTCTACAGACATAATCCGCACTTTTC
TAGGTCTCACTTGCATGTCCTGGTCTTTCGTCCCCTGCTTCCTCGTTGTC
GAACTCGCCTCCTCCATGCCCTCCCCCAAGCTCTTCCCTCGCTCCCTCCT
CCTCGCCGCCCTCCTCCTTCTCCTCCTCTTTCTCGGGGTGGGCGTCCCGC
TTGTGTATCAGTGGGGGTGGGACATACCTGACCCCAGTTACTCCTTCCCT
TCCTGGCCGTCCTCCCTCCCTGCCTCTCGGGTGATGCATGCCCTCATCTT
GCTCGCCAACCTGGTGTCCTACGCCTTGGATTCTGTACCCCTTGTCCGGT
ATTGCCAGCGGGTGTGGAAGCCCCGCTTTGATCCCACCGACTGGTCCCTC
CGGGCCGTGGGGACGTATTTCCTCCTCTCGCTCCCCTCCTTTATGTTTGG
GGTGCTCGCTGCCTTGGTGGTAGGGAACCTCCTGGCTCTGCTGGCGTTCG
TGAGTGCTTTGTCCGTGCCATGGGTCACGCAAATTTTGCCTGCTCTCTTC
TACTTCAAGTGGAGGAAGAGGATGTCGTCCCTCCCGCCCTCCTCCTTCCT
GAGTGGGCGGGACCATCATTCCCCCTGGTTGCTTGCCTTGCCTTCCCCCC
CGCCCTCTTTTCCTCCCTCCTCCTCCTCCTTCTCCACCTCCTTGGCTTTC
GCTAAACCGCACATCCTCCTCCCCTCTGAAGGTAAGGGGGGAATGCATGC
CCCCCTTTCACGGAAAGAGAAGCTCTTGTTGGTGCTGGTTGGGGGGGTAG
GGATTGTCAATTTTTCTATTTGTGCGGCTGCTGCTGTAGGGAAAGTGAGT
GTAAGCGAGCTTAGAGGACACACCCAGATCGGGTGTGGGACATGGACTGT
GTATAGCGATTGAGGGGAAGAGGGAGGGAGGGAGGGAGGGAGAGAGTGAG
GGAGGGAGGAAAGCAGGGAGATAACGTGTATGCATATATATACACATGTA
TACGTACACATATATACATCCATGTGTGAGTGACTGTATTGAATGAAACA
ACTATGAAGCCTTTTACCAAGGGCATTTGATGTATGCGGGCAGGGACCGG
AAAGAAGAAAAGAAATGAGTAAAGATAATGCGAGTGGCAGGGGAGACGCA
CAAGGAAAGGAATA

protein sequence of jgi.p|Nanoce1779_2|443477

>mRNA_4802-protein ID=mRNA_4802-protein|Name=jgi.p|Nanoce1779_2|443477|organism=Nannochloropsis oceanica|type=polypeptide|length=565bp
MIDEPKNSTPTPTNGINTNNDLILRLLPSFPATRSADDELPPHLFPLSSS
FQPPIPSSSSSAFRGTKSPPKTLHWAMAGLILFSFTAPGALVSVPFAIGT
TGYVLGMLVLCLFTAATCGGCLMLLEIYLAHPHCQNLPELGSVAIGGNGR
WGRRMAATAQLCNFVGFLPVSMTINAFALQGTLGVNPEDSCLDVYILLIS
LVCLLTTQARVLTNTQSLALLSLGAILAAGGIQLGIAFSPSLVPSPSPSP
SAKTAARFFGHPLLSSTILSTDIIRTFLGLTCMSWSFVPCFLVVELASSM
PSPKLFPRSLLLAALLLLLLFLGVGVPLVYQWGWDIPDPSYSFPSWPSSL
PASRVMHALILLANLVSYALDSVPLVRYCQRVWKPRFDPTDWSLRAVGTY
FLLSLPSFMFGVLAALVVGNLLALLAFVSALSVPWVTQILPALFYFKWRK
RMSSLPPSSFLSGRDHHSPWLLALPSPPPSFPPSSSSFSTSLAFAKPHIL
LPSEGKGGMHAPLSRKEKLLLVLVGGVGIVNFSICAAAAVGKVSVSELRG
HTQIGCGTWTVYSD*

mRNA from alignment at scaffold_9:655906..658269+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4802 ID=mRNA_4802|Name=jgi.p|Nanoce1779_2|443477|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at scaffold_9:655906..658269+ (Nannochloropsis oceanica)
CTCCCCACCTCCTTCCTATTCCACGCCTTGTATTGAACCCCATCCCCCCC
TTACACAGGCAGCGGTGTACAACGGCAGAAGCAAAAGGTCAAGTCTTGGA
CGAGATTGCACGAGCCGCACCAGATCTCCCGCCATGATGCTCTGAAAAAG
GCAGCGCCGCACCATCATCGTAAGATTAAAAATTAAAAAGCGGACCCCCG
TAGGGAGCGAAGGGAAGGAGTGTCAGGGTGGTGGTGATTCTAGTGCCGGC
ATCATTCTACGAGCAGCACACGTACCCTGCGCCTTCATCACGGATTCAGT
GCGCTCAACAAGCTGCCGCTGCAAGCTGCCGCAGCGGTAGGCCTCGTCTG
CTCAGAGTAGCCGCCACCAGACAATTTCTTAGCCTTTCCACGCACTCCGA
TTACACACCAGGCATACCATGATCGACGAGCCCAAGAATTCAACCCCGAC
CCCCACCAACGGCATCAACACGAACAATGACCTAATCCTCCGATTGCTTC
CTTCCTTCCCCGCCACCCGCTCCGCTGATGACGAGCTTCCCCCACATCTC
TTCCCCCTCTCCTCCTCCTTTCAGCCTCCCATCCCTTCCTCCTCTTCCTC
TGCCTTTCGGGGCACCAAAAGCCCCCCAAAAACCTTGCATTGGGCCATGG
CAGGACTCATTCTCTTCTCTTTTACTGCGCCGGGTGCCTTGGTCAGCGTT
CCCTTTGCGATTGGTACCACTGGGTATGTATTGGGCATGTTGGTGTTGTG
TCTTTTTACTGCAGCTACCTGTGGTGGGTGCTTGATGCTCTTGGAGATTT
ATCTTGCGCATCCGCACTGTCAGAACCTGCCAGAACTGGGATCGGTGGCG
ATTGGTGGGAATGGTAGGTGGGGAAGACGGATGGCAGCGACGGCGCAGTT
GTGTAATTTTGTGGGGTTCCTGCCTGTGTCAATGACGATTAATGCATTTG
CGTTGCAAGGCACGTTGGGGGTGAACCCGGAGGACTCCTGTTTGGACGTG
TATATATTGTTGATCAGCCTCGTCTGCCTCTTGACGACACAAGCCCGTGT
TCTGACAAACACCCAATCACTGGCGTTGCTCTCCCTCGGTGCTATTCTGG
CCGCCGGTGGGATCCAACTAGGCATCGCTTTCTCCCCTTCCCTCGTGCCC
TCCCCCTCCCCCTCCCCCTCCGCCAAAACTGCTGCCCGCTTCTTCGGCCA
CCCCCTCCTCTCCTCCACCATCCTGTCTACAGACATAATCCGCACTTTTC
TAGGTCTCACTTGCATGTCCTGGTCTTTCGTCCCCTGCTTCCTCGTTGTC
GAACTCGCCTCCTCCATGCCCTCCCCCAAGCTCTTCCCTCGCTCCCTCCT
CCTCGCCGCCCTCCTCCTTCTCCTCCTCTTTCTCGGGGTGGGCGTCCCGC
TTGTGTATCAGTGGGGGTGGGACATACCTGACCCCAGTTACTCCTTCCCT
TCCTGGCCGTCCTCCCTCCCTGCCTCTCGGGTGATGCATGCCCTCATCTT
GCTCGCCAACCTGGTGTCCTACGCCTTGGATTCTGTACCCCTTGTCCGGT
ATTGCCAGCGGGTGTGGAAGCCCCGCTTTGATCCCACCGACTGGTCCCTC
CGGGCCGTGGGGACGTATTTCCTCCTCTCGCTCCCCTCCTTTATGTTTGG
GGTGCTCGCTGCCTTGGTGGTAGGGAACCTCCTGGCTCTGCTGGCGTTCG
TGAGTGCTTTGTCCGTGCCATGGGTCACGCAAATTTTGCCTGCTCTCTTC
TACTTCAAGTGGAGGAAGAGGATGTCGTCCCTCCCGCCCTCCTCCTTCCT
GAGTGGGCGGGACCATCATTCCCCCTGGTTGCTTGCCTTGCCTTCCCCCC
CGCCCTCTTTTCCTCCCTCCTCCTCCTCCTTCTCCACCTCCTTGGCTTTC
GCTAAACCGCACATCCTCCTCCCCTCTGAAGGTAAGGGGGGAATGCATGC
CCCCCTTTCACGGAAAGAGAAGCTCTTGTTGGTGCTGGTTGGGGGGGTAG
GGATTGTCAATTTTTCTATTTGTGCGGCTGCTGCTGTAGGGAAAGTGAGT
GTAAGCGAGCTTAGAGGACACACCCAGATCGGGTGTGGGACATGGACTGT
GTATAGCGATTGAGGGGAAGAGGGAGGGAGGGAGGGAGGGAGAGAGTGAG
GGAGGGAGGAAAGCAGGGAGATAACGTGTATGCATATATATACACATGTA
TACGTACACATATATACATCCATGTGTGAGTGACTGTATTGAATGAAACA
ACTATGAAGCCTTTTACCAAGGGCATTTGATGTATGCGGGCAGGGACCGG
AAAGAAGAAAAGAAATGAGTAAAGATAATGCGAGTGGCAGGGGAGACGCA
CAAGGAAAGGAATA

Coding sequence (CDS) from alignment at scaffold_9:655906..658269+

>mRNA_4802 ID=mRNA_4802|Name=jgi.p|Nanoce1779_2|443477|organism=Nannochloropsis oceanica|type=CDS|length=1695bp|location=Sequence derived from alignment at scaffold_9:655906..658269+ (Nannochloropsis oceanica)
ATGATCGACGAGCCCAAGAATTCAACCCCGACCCCCACCAACGGCATCAA
CACGAACAATGACCTAATCCTCCGATTGCTTCCTTCCTTCCCCGCCACCC
GCTCCGCTGATGACGAGCTTCCCCCACATCTCTTCCCCCTCTCCTCCTCC
TTTCAGCCTCCCATCCCTTCCTCCTCTTCCTCTGCCTTTCGGGGCACCAA
AAGCCCCCCAAAAACCTTGCATTGGGCCATGGCAGGACTCATTCTCTTCT
CTTTTACTGCGCCGGGTGCCTTGGTCAGCGTTCCCTTTGCGATTGGTACC
ACTGGGTATGTATTGGGCATGTTGGTGTTGTGTCTTTTTACTGCAGCTAC
CTGTGGTGGGTGCTTGATGCTCTTGGAGATTTATCTTGCGCATCCGCACT
GTCAGAACCTGCCAGAACTGGGATCGGTGGCGATTGGTGGGAATGGTAGG
TGGGGAAGACGGATGGCAGCGACGGCGCAGTTGTGTAATTTTGTGGGGTT
CCTGCCTGTGTCAATGACGATTAATGCATTTGCGTTGCAAGGCACGTTGG
GGGTGAACCCGGAGGACTCCTGTTTGGACGTGTATATATTGTTGATCAGC
CTCGTCTGCCTCTTGACGACACAAGCCCGTGTTCTGACAAACACCCAATC
ACTGGCGTTGCTCTCCCTCGGTGCTATTCTGGCCGCCGGTGGGATCCAAC
TAGGCATCGCTTTCTCCCCTTCCCTCGTGCCCTCCCCCTCCCCCTCCCCC
TCCGCCAAAACTGCTGCCCGCTTCTTCGGCCACCCCCTCCTCTCCTCCAC
CATCCTGTCTACAGACATAATCCGCACTTTTCTAGGTCTCACTTGCATGT
CCTGGTCTTTCGTCCCCTGCTTCCTCGTTGTCGAACTCGCCTCCTCCATG
CCCTCCCCCAAGCTCTTCCCTCGCTCCCTCCTCCTCGCCGCCCTCCTCCT
TCTCCTCCTCTTTCTCGGGGTGGGCGTCCCGCTTGTGTATCAGTGGGGGT
GGGACATACCTGACCCCAGTTACTCCTTCCCTTCCTGGCCGTCCTCCCTC
CCTGCCTCTCGGGTGATGCATGCCCTCATCTTGCTCGCCAACCTGGTGTC
CTACGCCTTGGATTCTGTACCCCTTGTCCGGTATTGCCAGCGGGTGTGGA
AGCCCCGCTTTGATCCCACCGACTGGTCCCTCCGGGCCGTGGGGACGTAT
TTCCTCCTCTCGCTCCCCTCCTTTATGTTTGGGGTGCTCGCTGCCTTGGT
GGTAGGGAACCTCCTGGCTCTGCTGGCGTTCGTGAGTGCTTTGTCCGTGC
CATGGGTCACGCAAATTTTGCCTGCTCTCTTCTACTTCAAGTGGAGGAAG
AGGATGTCGTCCCTCCCGCCCTCCTCCTTCCTGAGTGGGCGGGACCATCA
TTCCCCCTGGTTGCTTGCCTTGCCTTCCCCCCCGCCCTCTTTTCCTCCCT
CCTCCTCCTCCTTCTCCACCTCCTTGGCTTTCGCTAAACCGCACATCCTC
CTCCCCTCTGAAGGTAAGGGGGGAATGCATGCCCCCCTTTCACGGAAAGA
GAAGCTCTTGTTGGTGCTGGTTGGGGGGGTAGGGATTGTCAATTTTTCTA
TTTGTGCGGCTGCTGCTGTAGGGAAAGTGAGTGTAAGCGAGCTTAGAGGA
CACACCCAGATCGGGTGTGGGACATGGACTGTGTATAGCGATTGA

Synonyms

Publications