jgi.p|Nanoce1779_2|588132, mRNA_4859 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588132
Unique Name	mRNA_4859
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	822
Alignment location	scaffold_9:793673..794494 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588218
Track	FilteredModels2
ProteinId	588132

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:793673..794494 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588132	gene_4859	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588132	mRNA_4859-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4859	CDS_4859	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:793673..794494+
coding sequence from alignment at scaffold_9:793673..794494+

mRNA sequence

>mRNA_4859 ID=mRNA_4859|Name=jgi.p|Nanoce1779_2|588132|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
CAGCAGCATCAGCACCAGCACCAGCACCAGCACGAAAGGGAAAGCAGCTA
CCGTTACCACGTTGGGAAGACAGAGCTGGCAACGTTGGAGCGAGAAATTA
TCAATGAAGTCTCCTTCAGCCGTCTTTCTCCTCCTCCTTCTCCCTCCTTC
CCCACCTCGCGGCCTTCTCCCACGACGAGCAGAAGTGCAACAAGACGCAG
CCGTCTTCCTATTCACAGCCACTCTTTTCCTTCTACTTCTACTCCCTTGC
CGTCCGACCACAATAGCACTTCCCACTACCATGGTAACGTCCACCCTTAC
CACCAACGGCACCTCCAGTTTGAACCCACCACTGCTGGTACTGCTGCTGC
TGATGATGATGATGACGACGACGACGACGACGACGACGAATGTGTAGACG
AAGACGACTTCCGTCCCCGCTTTCACCTCGGTGGTGCCGAGGCCGAGGAG
CTGCTCCAGTGGTTGGAAGACGAGGGCGTCACCCTACAGCAACCCGAGCG
GCTCCTTCTTTCGGCGTCCCACCACCAGGACTGCCCCGAGTTTTCCGACG
GCTTGCTCTTGGCGCGGTTGGTGGGGAGGTTGGAGGGATGGGGGGAGAAA
GGGTTGGAAGGGATTGACTGGACCCCCGGCGCCGCCATGGTGACGAGGTT
AAAGAATATTAAGAGGGTGTTGGAGGTATGGAAGAGGAAGCGGAGGGGGA
TTCCTGTGCATTTGTTGCATCGGGAATTCGATATTTTGGAGGGAAGGACG
GATGTCTTGCTGCCCTTGTTGTGGCACATCCGTCGGGTGTACGGGAGGGA
GAGGATCAACGCTGATGACTAG

protein sequence of jgi.p|Nanoce1779_2|588132

>mRNA_4859-protein ID=mRNA_4859-protein|Name=jgi.p|Nanoce1779_2|588132|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
QQHQHQHQHQHERESSYRYHVGKTELATLEREIINEVSFSRLSPPPSPSF
PTSRPSPTTSRSATRRSRLPIHSHSFPSTSTPLPSDHNSTSHYHGNVHPY
HQRHLQFEPTTAGTAAADDDDDDDDDDDDECVDEDDFRPRFHLGGAEAEE
LLQWLEDEGVTLQQPERLLLSASHHQDCPEFSDGLLLARLVGRLEGWGEK
GLEGIDWTPGAAMVTRLKNIKRVLEVWKRKRRGIPVHLLHREFDILEGRT
DVLLPLLWHIRRVYGRERINADD*

mRNA from alignment at scaffold_9:793673..794494+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4859 ID=mRNA_4859|Name=jgi.p|Nanoce1779_2|588132|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at scaffold_9:793673..794494+ (Nannochloropsis oceanica)
CAGCAGCATCAGCACCAGCACCAGCACCAGCACGAAAGGGAAAGCAGCTA
CCGTTACCACGTTGGGAAGACAGAGCTGGCAACGTTGGAGCGAGAAATTA
TCAATGAAGTCTCCTTCAGCCGTCTTTCTCCTCCTCCTTCTCCCTCCTTC
CCCACCTCGCGGCCTTCTCCCACGACGAGCAGAAGTGCAACAAGACGCAG
CCGTCTTCCTATTCACAGCCACTCTTTTCCTTCTACTTCTACTCCCTTGC
CGTCCGACCACAATAGCACTTCCCACTACCATGGTAACGTCCACCCTTAC
CACCAACGGCACCTCCAGTTTGAACCCACCACTGCTGGTACTGCTGCTGC
TGATGATGATGATGACGACGACGACGACGACGACGACGAATGTGTAGACG
AAGACGACTTCCGTCCCCGCTTTCACCTCGGTGGTGCCGAGGCCGAGGAG
CTGCTCCAGTGGTTGGAAGACGAGGGCGTCACCCTACAGCAACCCGAGCG
GCTCCTTCTTTCGGCGTCCCACCACCAGGACTGCCCCGAGTTTTCCGACG
GCTTGCTCTTGGCGCGGTTGGTGGGGAGGTTGGAGGGATGGGGGGAGAAA
GGGTTGGAAGGGATTGACTGGACCCCCGGCGCCGCCATGGTGACGAGGTT
AAAGAATATTAAGAGGGTGTTGGAGGTATGGAAGAGGAAGCGGAGGGGGA
TTCCTGTGCATTTGTTGCATCGGGAATTCGATATTTTGGAGGGAAGGACG
GATGTCTTGCTGCCCTTGTTGTGGCACATCCGTCGGGTGTACGGGAGGGA
GAGGATCAACGCTGATGACTAG

Coding sequence (CDS) from alignment at scaffold_9:793673..794494+

>mRNA_4859 ID=mRNA_4859|Name=jgi.p|Nanoce1779_2|588132|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_9:793673..794494+ (Nannochloropsis oceanica)
CAGCAGCATCAGCACCAGCACCAGCACCAGCACGAAAGGGAAAGCAGCTA
CCGTTACCACGTTGGGAAGACAGAGCTGGCAACGTTGGAGCGAGAAATTA
TCAATGAAGTCTCCTTCAGCCGTCTTTCTCCTCCTCCTTCTCCCTCCTTC
CCCACCTCGCGGCCTTCTCCCACGACGAGCAGAAGTGCAACAAGACGCAG
CCGTCTTCCTATTCACAGCCACTCTTTTCCTTCTACTTCTACTCCCTTGC
CGTCCGACCACAATAGCACTTCCCACTACCATGGTAACGTCCACCCTTAC
CACCAACGGCACCTCCAGTTTGAACCCACCACTGCTGGTACTGCTGCTGC
TGATGATGATGATGACGACGACGACGACGACGACGACGAATGTGTAGACG
AAGACGACTTCCGTCCCCGCTTTCACCTCGGTGGTGCCGAGGCCGAGGAG
CTGCTCCAGTGGTTGGAAGACGAGGGCGTCACCCTACAGCAACCCGAGCG
GCTCCTTCTTTCGGCGTCCCACCACCAGGACTGCCCCGAGTTTTCCGACG
GCTTGCTCTTGGCGCGGTTGGTGGGGAGGTTGGAGGGATGGGGGGAGAAA
GGGTTGGAAGGGATTGACTGGACCCCCGGCGCCGCCATGGTGACGAGGTT
AAAGAATATTAAGAGGGTGTTGGAGGTATGGAAGAGGAAGCGGAGGGGGA
TTCCTGTGCATTTGTTGCATCGGGAATTCGATATTTTGGAGGGAAGGACG
GATGTCTTGCTGCCCTTGTTGTGGCACATCCGTCGGGTGTACGGGAGGGA
GAGGATCAACGCTGATGACTAG

Synonyms

Publications