jgi.p|Nanoce1779_2|588169, mRNA_4867 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588169
Unique NamemRNA_4867
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1041
Alignment locationscaffold_9:823342..824958 -

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Properties
Property NameValue
TranscriptId588255
TrackFilteredModels2
ProteinId588169
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:823342..824958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588169gene_4867Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588169mRNA_4867-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4867CDS_4867Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4867 ID=mRNA_4867|Name=jgi.p|Nanoce1779_2|588169|organism=Nannochloropsis oceanica|type=mRNA|length=1041bp
AGACCCTTCTCCACCAAATATGCGTGTCGTCTCCTTGGGTTTGGCATTGG
CCTGCGCGGCCCCTGCCGTCGCTTTCCTGCCCCCCACCGTCCCTGCTGGC
CGAGATGTATCTATGCGTGCTGGCCAGGGCCAAGAACGCCGGGACTTCGT
CAAGAGCACTCTGGGCTTCGCCAGCGCTCTGGGCGTGGTTGCCACCCTCT
CCCCCTCCCTCCCCGCTAACGCTGGCTTCTTGAACAAGGACAAACTGCCC
GAGGTCATCAAACCCGTCGATGCCGAGATTGACCAAGACATTCTCAAGTC
TTCCGATGTCCAAGACGAATTGAAGGCCATCCGAAAATACCAGGCGGGCG
TCTCGAGCATCAAGGCCGACTTCACGGGGAATCCCCAGGCGGATTTGTAC
GACCGCGTGCGCAAGGAGTTGGACGTGTCGTCCCTGCGTGACAGCCTGAA
CAAGGTCAACACTGTCTTCTCCGAGGACACCCAGCGAGGGACGGACCGCA
TCGTGCGCATTATCTTGCAGGATGTGAACGAGTTAGAAGTGGCGGCTCGC
CAGCGCCCGGGCACCACTCGGTCGGATACCAAGCTGAAGTTAATCAACAA
GAAGCTCAAGAAGCTCGACGATGCTTTCTCGGAGCTTTTGACTTACTTCT
AGAGTGAGGAGAAACAAGGGATATCATGTGACCAAGTGACCAAGGCGCTT
TTTAACTTCCATCTGTCTTTGAAACCTATCATAGAGGTTAGGAATGTGAC
CAGAAAGAGGGAGGGAAGGGGTGGGGGCATGTGGGGTAGCCTCACATCAA
CAGCCTTCGGTGAGAAAGACACACACAATTACAGAAATGGGAAGGAGGGA
AGAGCTCCTGGGAAGAGAGGGAAAGAAAGCGAGTGGCTTTTTGAATGTGT
GTTTCTCATGTGTGTGTGTCTTGAGGTTTGTGTGTGTGTGATCGTGTATT
GATCTCGTAGTTACGAAACACAATAGCAAGCCGAAAACTTTGATAGGAAT
AAGGAAAAGCAGCCGAACCGTAATCAGTCAATCGATAACAC
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protein sequence of jgi.p|Nanoce1779_2|588169

>mRNA_4867-protein ID=mRNA_4867-protein|Name=jgi.p|Nanoce1779_2|588169|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MRVVSLGLALACAAPAVAFLPPTVPAGRDVSMRAGQGQERRDFVKSTLGF
ASALGVVATLSPSLPANAGFLNKDKLPEVIKPVDAEIDQDILKSSDVQDE
LKAIRKYQAGVSSIKADFTGNPQADLYDRVRKELDVSSLRDSLNKVNTVF
SEDTQRGTDRIVRIILQDVNELEVAARQRPGTTRSDTKLKLINKKLKKLD
DAFSELLTYF*
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mRNA from alignment at scaffold_9:823342..824958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4867 ID=mRNA_4867|Name=jgi.p|Nanoce1779_2|588169|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp|location=Sequence derived from alignment at scaffold_9:823342..824958- (Nannochloropsis oceanica)
AGACCCTTCTCCACCAAATATGCGTGTCGTCTCCTTGGGTTTGGCATTGG
CCTGCGCGGCCCCTGCCGTCGCTTTCCTGCCCCCCACCGTCCCTGCTGGC
CGAGGTAAGCAGCGAATTAGAAGATCATCTATCAGCGGAGAGCGACCATG
TCCAAGCCCGCCCACACGGTCACTGTGTGCGTGATTGTGCGGCTCTCCTA
TACCATCCACCTGCCTCACCCATCTATCTACGTAAATAATAGATGTATCT
ATGCGTGCTGGCCAGGGCCAAGAACGCCGGGACTTCGTCAAGAGCACTCT
GGGTAAGTCAACATGCTTTTCATCGTCCATCATCGGTAACTACCACCTTG
CCCTTCCTTGGTCGTTTCATTCCTGCCGTGTGTGGCCTTGAAAGGGCACA
TAGACACCGCTTATTTGCAGTGCCTTGTCTGTCACCTCTCTTTACCCTAA
GCCCGCCGTCTCAACATTCCGTGTACCTTCTAAATCCTCCCCTCCTCTCC
TTGCACAGGCTTCGCCAGCGCTCTGGGCGTGGTTGCCACCCTCTCCCCCT
CCCTCCCCGCTAACGCTGGCTTCTTGAACAAGGACAAACTGCCCGAGGTC
ATCAAACCCGTCGATGCCGAGATTGACCAAGACATTCTCAAGTCTTCCGA
TGTCCAAGACGAATTGAAGGCCATCCGAAAATACCAGGCGGGCGTCTCGA
GCATCAAGGCCGACTTCACGGGGAATCCCCAGGCGGATTTGTACGACCGC
GTGCGCAAGGTACGTCTTGAGGGTCTACGGTCTATCACAAAATATTTTAA
TTGGGAAGCACGGCATCCGCTTCTGCTTCTGCCGCTTGTGTGAGGCAGGC
TACTTTGAGAGAGTGGGAATTACGAGGGCCTTTAGGATTCTCCAAGACAG
TATGAAATGCGACGGATGTCCATATATCACCATTATCATTTATGGTCCCA
ATCCACGTACTGCCTCTCACCACCTCTATCTGGAAAAATAGGAGTTGGAC
GTGTCGTCCCTGCGTGACAGCCTGAACAAGGTCAACACTGTCTTCTCCGA
GGACACCCAGCGAGGGACGGACCGCATCGTGCGCATTATCTTGCAGGATG
TGAACGAGTTAGAAGTGGCGGCTCGCCAGCGCCCGGGCACCACTCGGTCG
GATACCAAGCTGAAGTTAATCAACAAGAAGCTCAAGAAGCTCGACGATGC
TTTCTCGGAGCTTTTGACTTACTTCTAGAGTGAGGAGAAACAAGGGATAT
CATGTGACCAAGTGACCAAGGCGCTTTTTAACTTCCATCTGTCTTTGAAA
CCTATCATAGAGGTTAGGAATGTGACCAGAAAGAGGGAGGGAAGGGGTGG
GGGCATGTGGGGTAGCCTCACATCAACAGCCTTCGGTGAGAAAGACACAC
ACAATTACAGAAATGGGAAGGAGGGAAGAGCTCCTGGGAAGAGAGGGAAA
GAAAGCGAGTGGCTTTTTGAATGTGTGTTTCTCATGTGTGTGTGTCTTGA
GGTTTGTGTGTGTGTGATCGTGTATTGATCTCGTAGTTACGAAACACAAT
AGCAAGCCGAAAACTTTGATAGGAATAAGGAAAAGCAGCCGAACCGTAAT
CAGTCAATCGATAACAC
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Coding sequence (CDS) from alignment at scaffold_9:823342..824958-

>mRNA_4867 ID=mRNA_4867|Name=jgi.p|Nanoce1779_2|588169|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_9:823342..824958- (Nannochloropsis oceanica)
GAGTTGGACGTGTCGTCCCTGCGTGACAGCCTGAACAAGGTCAACACTGT
CTTCTCCGAGGACACCCAGCGAGGGACGGACCGCATCGTGCGCATTATCT
TGCAGGATGTGAACGAGTTAGAAGTGGCGGCTCGCCAGCGCCCGGGCACC
ACTCGGTCGGATACCAAGCTGAAGTTAATCAACAAGAAGCTCAAGAAGCT
CGACGATGCTTTCTCGGAGCTTTTGACTTACTTCTAGGCTTCGCCAGCGC
TCTGGGCGTGGTTGCCACCCTCTCCCCCTCCCTCCCCGCTAACGCTGGCT
TCTTGAACAAGGACAAACTGCCCGAGGTCATCAAACCCGTCGATGCCGAG
ATTGACCAAGACATTCTCAAGTCTTCCGATGTCCAAGACGAATTGAAGGC
CATCCGAAAATACCAGGCGGGCGTCTCGAGCATCAAGGCCGACTTCACGG
GGAATCCCCAGGCGGATTTGTACGACCGCGTGCGCAAGATGTATCTATGC
GTGCTGGCCAGGGCCAAGAACGCCGGGACTTCGTCAAGAGCACTCTGGAT
GCGTGTCGTCTCCTTGGGTTTGGCATTGGCCTGCGCGGCCCCTGCCGTCG
CTTTCCTGCCCCCCACCGTCCCTGCTGGCCGAGGAGTTGGACGTGTCGTC
CCTGCGTGACAGCCTGAACAAGGTCAACACTGTCTTCTCCGAGGACACCC
AGCGAGGGACGGACCGCATCGTGCGCATTATCTTGCAGGATGTGAACGAG
TTAGAAGTGGCGGCTCGCCAGCGCCCGGGCACCACTCGGTCGGATACCAA
GCTGAAGTTAATCAACAAGAAGCTCAAGAAGCTCGACGATGCTTTCTCGG
AGCTTTTGACTTACTTCTAGGCTTCGCCAGCGCTCTGGGCGTGGTTGCCA
CCCTCTCCCCCTCCCTCCCCGCTAACGCTGGCTTCTTGAACAAGGACAAA
CTGCCCGAGGTCATCAAACCCGTCGATGCCGAGATTGACCAAGACATTCT
CAAGTCTTCCGATGTCCAAGACGAATTGAAGGCCATCCGAAAATACCAGG
CGGGCGTCTCGAGCATCAAGGCCGACTTCACGGGGAATCCCCAGGCGGAT
TTGTACGACCGCGTGCGCAAGATGTATCTATGCGTGCTGGCCAGGGCCAA
GAACGCCGGGACTTCGTCAAGAGCACTCTGGATGCGTGTCGTCTCCTTGG
GTTTGGCATTGGCCTGCGCGGCCCCTGCCGTCGCTTTCCTGCCCCCCACC
GTCCCTGCTGGCCGAGGAGTTGGACGTGTCGTCCCTGCGTGACAGCCTGA
ACAAGGTCAACACTGTCTTCTCCGAGGACACCCAGCGAGGGACGGACCGC
ATCGTGCGCATTATCTTGCAGGATGTGAACGAGTTAGAAGTGGCGGCTCG
CCAGCGCCCGGGCACCACTCGGTCGGATACCAAGCTGAAGTTAATCAACA
AGAAGCTCAAGAAGCTCGACGATGCTTTCTCGGAGCTTTTGACTTACTTC
TAGGCTTCGCCAGCGCTCTGGGCGTGGTTGCCACCCTCTCCCCCTCCCTC
CCCGCTAACGCTGGCTTCTTGAACAAGGACAAACTGCCCGAGGTCATCAA
ACCCGTCGATGCCGAGATTGACCAAGACATTCTCAAGTCTTCCGATGTCC
AAGACGAATTGAAGGCCATCCGAAAATACCAGGCGGGCGTCTCGAGCATC
AAGGCCGACTTCACGGGGAATCCCCAGGCGGATTTGTACGACCGCGTGCG
CAAGATGTATCTATGCGTGCTGGCCAGGGCCAAGAACGCCGGGACTTCGT
CAAGAGCACTCTGGATGCGTGTCGTCTCCTTGGGTTTGGCATTGGCCTGC
GCGGCCCCTGCCGTCGCTTTCCTGCCCCCCACCGTCCCTGCTGGCCGAGG
AGTTGGACGTGTCGTCCCTGCGTGACAGCCTGAACAAGGTCAACACTGTC
TTCTCCGAGGACACCCAGCGAGGGACGGACCGCATCGTGCGCATTATCTT
GCAGGATGTGAACGAGTTAGAAGTGGCGGCTCGCCAGCGCCCGGGCACCA
CTCGGTCGGATACCAAGCTGAAGTTAATCAACAAGAAGCTCAAGAAGCTC
GACGATGCTTTCTCGGAGCTTTTGACTTACTTCTAGGCTTCGCCAGCGCT
CTGGGCGTGGTTGCCACCCTCTCCCCCTCCCTCCCCGCTAACGCTGGCTT
CTTGAACAAGGACAAACTGCCCGAGGTCATCAAACCCGTCGATGCCGAGA
TTGACCAAGACATTCTCAAGTCTTCCGATGTCCAAGACGAATTGAAGGCC
ATCCGAAAATACCAGGCGGGCGTCTCGAGCATCAAGGCCGACTTCACGGG
GAATCCCCAGGCGGATTTGTACGACCGCGTGCGCAAGATGTATCTATGCG
TGCTGGCCAGGGCCAAGAACGCCGGGACTTCGTCAAGAGCACTCTGGATG
CGTGTCGTCTCCTTGGGTTTGGCATTGGCCTGCGCGGCCCCTGCCGTCGC
TTTCCTGCCCCCCACCGTCCCTGCTGGCCGAG
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Synonyms
Publications