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Properties
| Property Name | Value |
|---|
| TranscriptId | 588076 |
| Track | FilteredModels2 |
| ProteinId | 587990 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:689154..693154 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4815 ID=mRNA_4815|Name=jgi.p|Nanoce1779_2|587990|organism=Nannochloropsis oceanica|type=mRNA|length=3341bp
TCCTCCTCCTCCTCCTCCTCCTCTGCGGGCACGGCACGCCCTCCCCGTGA
CCAGCACCGCCAAATGTTTCCCCTCTTTCGCACTCACCCCAATCCTATCC
TCAAACAGCTTTAATACCTTCTCCTTGCCTACCTGGAGCAACGCCATGAC
TTCCAACGGACCGACATCGAATTGAAACCGACGGTCGACGATCTCTGCCC
AGTATCTTCCACTTTCATCATTCAAACTCGCGTCCCTCTGTAGTTTATTT
TGAGCCAGACTAGCGACTTGCCGGGCGTAGACGGAAGGGGGCAGGGATGA
CAGGGTTGTGTAAAAAGAGAGGAGGAATGCCTCGAGGCGGGCGTGGAGGT
GCCGAGGTTCATAGCGTTCCGATTGGATCCGAATGGCCAAACCGAGGATG
CCGTTCGTCATTCGGAGGCCACATGATACGGAATAGCCCAACTGCTCCTT
GGTACGAAGAGTATCGTACAGGGGTTCTTCGAGGAGCTGCTCAAGCATCT
GAACCACCACTCGGTCCTCAATTGTGTCTTTCTCCAGCTGCCAGTAGGCC
TCTAACGCCGAGTTCCTCTCACCGCTGTCCACGCTCTCAGCAGCCAGGAG
GAGGTTGGTCCGTTCCGGCAGAACGACGATGCGATTGGAGGGGTAGGAGG
AGGGAGGGAGGGGCATGATGCTCGCCTCTTGGAAAAGGGAGCAGAGAAGT
GAGTGGAGAGCGTCGGCGTCGGCGGCGTCGCAGTTGCCCTGATAGAGCCC
ATCCACCTGGACTTGTCCCAACAAAAGAGGCACAAATTGCTCCATCTCTT
CGATCGTCAGCGTCCTTGCCTCCCTCTCCAACGCCTCCGCGGTCCACATT
TTTTCCTTCAACACATGCAAGCGCAGCATCCGGGCGTGGCGACTCGGCTT
AATATTTTCATTGCCGTAGCTCCGCACTAACGCCTCCTTTTGCGTTTCGA
ATCTCAACGGATGACACGCAAAAAAAGCACCCCTTCCTCCCTTCCTCCCT
CCCTCCCGCCCCCCATCCTTCTCTCCTTCATCTCCATTCTCCGTCCCACC
CTCCCTCAAGAGAAGCCGACGTAGGACGAGTTCGACGAGACGCAAGAGCT
TGTCAGAGAGTCCGTGAAAGTGCAGCTCTAGTCCTAGTTCAGTGGCTTTC
AACGCATAATGAAGCTCCGCAATACTGGCCAGGTACGTGGTTTCGTTCAA
ACTGTCCCGCACCAGCCGAACGAAAAGCTCTGTCATGGCCTCATGCCGAG
GAGAGGCGTAGGCGTGAGGAGTAGCCAATTTGAGGTAGATTGCTGCTCGG
GGGGTACGAAAAACACGGTCTTGCAAATGCCACAAATAGAGGGCGTCGAA
TGACGCAGAGGAGGACGGGAGGGAGGGAGGGAAGGAGAGGAGGGTAGGGT
AGTGGTATTTGAACGAGGGGGGGAGGGAAGATCGGATCTGAGAGAGGATA
GAAGCGAGCTCCGGATCCTCTTTTTGAAGCCTATGGAGGGAGGCCTCTAG
GCCGTTGGGATTCATGTTACCGCTGCTGCTGGGGAGGAGAGAGAGGGAGG
ACGCGGAGGGCAGGAGGGAGGGAGGGACAGGAGGAGCAGCTGCAGTAGTG
GACGTCGAAGAGGAGACGTCATCGACGAAAGGCAAATCTTTGACGGTCAG
GTCTGTGGCAACAAAGGGGTTTGGTAACGGCAAGGCCAGCCGCGGTTCCT
GTTGCTGCTGCACCTTCCCCATTTTCGCCCCCGTTGTATCAGCAGAAGTA
GAAGCAGCAGCAGCAGCAAAACTATCCGTCCACGCCTGCAACGTCTTCCC
GGGGATTTTTTCCCGTGTGAAATGCACACCGAATCTCGGCTCCTTCTCCA
CAGGCACCCCCTCAATCACATGCCCCTCCTTCCCGCCCTCCACCCCGCCC
TTATCCTGCTGCTCTGCTGCATCCAACAACCCCGCCCTCCCAAAACAGGA
ACTTATCAAATCGACCCTACACTTGGCTGGGTCCTTAATCACCCGCATAA
TTGCCTCCAACCACTCGGGCCGCCACTCCCACATCAAGAAGGGCGCCTGC
AACATCTCCTCCTTCCTAAACCTGTACATGGGCAGCAACCCCACACACAG
CTGTTCCGCCAGCTCCCCGCTCTCGATCTCCTCCTGGTATTTATACTGCA
TGGCACTGATCGCAGACAGCTCGTCAAAGATCCATTTTTGCCACCCTTCC
CTCCTCATCACCCCCAAATAAGTGAAGATCAGCGAGATGATAGCAGGCCA
CTCACTTACGCCGCCCTCGGTCAGGGTCACCGCCATCGTGAATAATGCGA
GGCCTGTGGAGGAGTCATATCCTTCCCCACTGATGCCGGCGACGATGGCT
GTCGCCCACCCTTTGGCTTTCAGGCAGGCAAGGATCGAACCGGGGCCTTC
ATGCCCGAGGAGATGCCCAAAATACTCCCATGGCTTGGCTCGGTACTGCT
CCAGCAAGGAAGGCAGCTGCCAGGTGAGGTGCAGCTGGTGTAAGTCCCTA
ACAGGCACTATACGAAACAACCATCCCAAGGCATTGGTCTCGTCCATCGG
GGGCGGCAGGCCGTCCAGAATCGAGGGAGGGAGGGCAGAAGGAATAGAAG
GCTGCACAATCGGTAAAGGTGATGAGGGAGGGAGAGAGGGAGGGACACGG
ATACCAGCAAATGTGTGACAGACGATATTCTCGAGGATGTCAAGGTCTTC
CATGCCGAGGAGGAGCAACCTCATGTTCGGCGCAGTGTAGTGCTGACGGT
GAAAACGGCGAAGCTCATCGTTAATGTCCAAACCAGCCGCCAACGGGGCG
TCCCGGAGTGACGAGAGGTTCCCCCAGGGGAAGCTGGAGTAAGGATGCGA
CGAACGGGAGGTATGGCAGATCAACTGAGTGCACCGCGTGCTGTCGTTGC
CACGGGAGAGATTGAATTCGCTTTCAATGGCCTCCAATTCCCGGGAAGAC
GCCTCGGGCCTCATCAAGGGGCTTATGAAGAACTGGGCGAAGATATCAAG
GGTCTTTTCAAAACTTGCCGGCGGCACCTCGAAATGGTACACCGTGTATT
CACACTCAGTCATGGCGTTGCTGTACCCTCCCCGACTACTTATAAATGAA
TCATACGCATTTTCATCCGGGTATTTTTCGCTTCCCATGAACAACATATG
CTCCAAGTAATGTGCCAGCCCTTGCACGCCCGGTGGGTCATGGAACGAAC
CTACCCCTACCGCCATCGCTGCTGCTGACAAGCGGACCCCTGCTCCATCC
TCCCCTCCTCCAGTAGCAGCAGCAGCAACAGTAGGACCAGGGCATTCCTC
TGTGTCGGTGGTGAGGGCAGGGTGGGGAGGATGATCGTGCT back to topprotein sequence of jgi.p|Nanoce1779_2|587990 >mRNA_4815-protein ID=mRNA_4815-protein|Name=jgi.p|Nanoce1779_2|587990|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MLPLLLGRREREDAEGRREGGTGGAAAVVDVEEETSSTKGKSLTVRSVAT
KGFGNGKASRGSCCCCTFPIFAPVVSAEVEAAAAAKLSVHACNVFPGIFS
RVKCTPNLGSFSTGTPSITCPSFPPSTPPLSCCSAASNNPALPKQELIKS
TLHLAGSLITRIIASNHSGRHSHIKKGACNISSFLNLYMGSNPTHSCSAS
SPLSISSWYLYCMALIADSSSKIHFCHPSLLITPK* back to topmRNA from alignment at scaffold_9:689154..693154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4815 ID=mRNA_4815|Name=jgi.p|Nanoce1779_2|587990|organism=Nannochloropsis oceanica|type=mRNA|length=4001bp|location=Sequence derived from alignment at scaffold_9:689154..693154- (Nannochloropsis oceanica)
TCCTCCTCCTCCTCCTCCTCCTCTGCGGGCACGGCACGCCCTCCCCGTGA
CCAGCACCGCCAAATGTTTCCCCTCTTTCGCACTCACCCCAATCCTATCC
TCAAACAGCTTTAATACCTTCTCCTTGCCTACCTGGAGCAACGCCATGAC
TTCCAACGGACCGACATCGAATTGAAACCGACGGTCGACGATCTCTGCCC
AGTATCTTCCACTTTCATCATTCAAACTCGCGTCCCTCTGTAGTTTATTT
TGAGCCAGACTAGCGACTTGCCGGGCGTAGACGGAAGGGGGCAGGGATGA
CAGGGTTGTGTAAAAAGAGAGGAGGAATGCCTCGAGGCGGGCGTGGAGGT
GCCGAGGTTCATAGCGTTCCGATTGGATCCGAATGGCCAAACCGAGGATG
CCGTTCGTCATTCGGAGGCCACATGATACGGAATAGCCCAACTGCTCCTT
GGTACGAAGAGTATCGTACAGGGGTTCTTCGAGGAGCTGGAGGGGACGGT
GAGAGGGTGGGGGAAGGGGAGGGAGGGTGGATGGGAGGAAGAGGCAGTGG
TATGCGAATACGAAGAAGAGTATGTGGGCTTGCCTAGCCGCGACCCCAAG
AAGAGGGGGGGGGAGAGGGAGGGAGAGAGGGAGGGAGGGAAGGAGGGATA
GGTACCTGCTCAAGCATCTGAACCACCACTCGGTCCTCAATTGTGTCTTT
CTCCAGCTGCCAGTAGGCCTCTAACGCCGAGTTCCTCTCACCGCTGTCCA
CGCTCTCAGCAGCCAGGAGGAGGTTGGTCCGTTCCGGCAGAACGACGATG
CGATTGGAGGGGTAGGAGGAGGGAGGGAGGGGCATGATGCTCGCCTCTTG
GAAAAGGGAGCAGAGAAGTGAGTGGAGAGCGTCGGCGTCGGCGGCGTCGC
AGTTGCCCTGTGACGAAAGGGAAGGAGGAAGGGAGGGAGGGAGAGAGGGA
GAGGGGAAATGAAATAAGGTCGGGAGAGATAAATAGTGTACACTCTAAAT
ACTGCCCTTCCCGTATCCGCCCCTCCCTCCCTCCCTCCCTCCCACCCTCA
TTCCATCTCTACCTGATAGAGCCCATCCACCTGGACTTGTCCCAACAAAA
GAGGCACAAATTGCTCCATCTCTTCGATCGTCAGCGTCCTTGCCTCCCTC
TCCAACGCCTCCGCGGTCCACATTTTTTCCTTCAACACATGCAAGCGCAG
CATCCGGGCGTGGCGACTCGGCTTAATATTTTCATTGCCGTAGCTCCGCA
CTAACGCCTCCTTTTGCGTTTCGAATCTCAACGGATGACACGCAAAAAAA
GCACCCCTTCCTCCCTTCCTCCCTCCCTCCCGCCCCCCATCCTTCTCTCC
TTCATCTCCATTCTCCGTCCCACCCTCCCTCAAGAGAAGCCGACGTAGGA
CGAGTTCGACGAGACGCAAGAGCTTGTCAGAGAGTCCGTGAAAGTGCAGC
TCTAGTCCTAGTTCAGTGGCTGGTAAGAGAGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAAGGAAGGAGGCAGAGAAAGAGGAAGAGTGGATGAAA
GAGCTGGACCCCACGACAAACTACACCCACATCGAGGCCGGCGAATGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGAGATTGGGAGGAC
AGGACAGGGCAAGAGTGTACCTTTCAACGCATAATGAAGCTCCGCAATAC
TGGCCAGGTACGTGGTTTCGTTCAAACTGTCCCGCACCAGCCGAACGAAA
AGCTCTGTCATGGCCTCATGCCGAGGAGAGGCGTAGGCGTGAGGAGTAGC
CAATTTGAGGTAGATTGCTGCTCGGGGGGTACGAAAAACACGGTCTTGCA
AATGCCACAAATAGAGGGCGTCGAATGACGCAGAGGAGGACGGGAGGGAG
GGAGGGAAGGAGAGGAGGGTAGGGTAGTGGTATTTGAACGAGGGGGGGAG
GGAAGATCGGATCTGAGAGAGGATAGAAGCGAGCTCCGGATCCTCTTTTT
GAAGCCTATGGAGGGAGGCCTCTAGGCCGTTGGGATTCATGTTACCGCTG
CTGCTGGGGAGGAGAGAGAGGGAGGACGCGGAGGGCAGGAGGGAGGGAGG
GACAGGAGGAGCAGCTGCAGTAGTGGACGTCGAAGAGGAGACGTCATCGA
CGAAAGGCAAATCTTTGACGGTCAGGTCTGTGGCAACAAAGGGGTTTGGT
AACGGCAAGGCCAGCCGCGGTTCCTGTTGCTGCTGCACCTTCCCCATTTT
CGCCCCCGTTGTATCAGCAGAAGTAGAAGCAGCAGCAGCAGCAAAACTAT
CCGTCCACGCCTGCAACGTCTTCCCGGGGATTTTTTCCCGTGTGAAATGC
ACACCGAATCTCGGCTCCTTCTCCACAGGCACCCCCTCAATCACATGCCC
CTCCTTCCCGCCCTCCACCCCGCCCTTATCCTGCTGCTCTGCTGCATCCA
ACAACCCCGCCCTCCCAAAACAGGAACTTATCAAATCGACCCTACACTTG
GCTGGGTCCTTAATCACCCGCATAATTGCCTCCAACCACTCGGGCCGCCA
CTCCCACATCAAGAAGGGCGCCTGCAACATCTCCTCCTTCCTAAACCTGT
ACATGGGCAGCAACCCCACACACAGCTGTTCCGCCAGCTCCCCGCTCTCG
ATCTCCTCCTGGTATTTATACTGCATGGCACTGATCGCAGACAGCTCGTC
AAAGATCCATTTTTGCCACCCTTCCCTCCTCATCACCCCCAAATAAGTGA
AGATCAGCGAGATGATAGCAGGCCACTCACTTACGCCGCCCTCGGTCAGG
GTCACCGCCATCGTGAATAATGCGAGGCCTGTGGAGGAGTCATATCCTTC
CCCACTGATGCCGGCGACGATGGCTGTCGCCCACCCTTTGGCTTTCAGGC
AGGCAAGGATCGAACCGGGGCCTTCATGCCCGAGGAGATGCCTGGAAAGA
GAAGCAGGGAGGGAGGGAGGAAGGGAGGGAGGGTAAACGATCAGGCCTCA
GCCTCAAACGCCTAGCAATACATCACAATCTCCTCATCTCACCTCCTTCC
CTCCCTCGGTCCCCTCCTTCCCTTACCCAAAATACTCCCATGGCTTGGCT
CGGTACTGCTCCAGCAAGGAAGGCAGCTGCCAGGTGAGGTGCAGCTGGTG
TAAGTCCCTAACAGGCACTATACGAAACAACCATCCCAAGGCATTGGTCT
CGTCCATCGGGGGCGGCAGGCCGTCCAGAATCGAGGGAGGGAGGGCAGAA
GGAATAGAAGGCTGCACAATCGGTAAAGGTGATGAGGGAGGGAGAGAGGG
AGGGACACGGATACCAGCAAATGTGTGACAGACGATATTCTCGAGGATGT
CAAGGTCTTCCATGCCGAGGAGGAGCAACCTCATGTTCGGCGCAGTGTAG
TGCTGACGGTGAAAACGGCGAAGCTCATCGTTAATGTCCAAACCAGCCGC
CAACGGGGCGTCCCGGAGTGACGAGAGGTTCCCCCAGGGGAAGCTGGAGT
AAGGATGCGACGAACGGGAGGTATGGCAGATCAACTGAGTGCACCGCGTG
CTGTCGTTGCCACGGGAGAGATTGAATTCGCTTTCAATGGCCTCCAATTC
CCGGGAAGACGCCTCGGGCCTCATCAAGGGGCTTATGAAGAACTGGGCGA
AGATATCAAGGGTCTTTTCAAAACTTGCCGGCGGCACCTCGAAATGGTAC
ACCGTGTATTCACACTCAGTCATGGCGTTGCTGTACCCTCCCCGACTACT
TATAAATGAATCATACGCATTTTCATCCGGGTATTTTTCGCTTCCCATGA
ACAACATATGCTCCAAGTAATGTGCCAGCCCTTGCACGCCCGGTGGGTCA
TGGAACGAACCTACCCCTACCGCCATCGCTGCTGCTGACAAGCGGACCCC
TGCTCCATCCTCCCCTCCTCCAGTAGCAGCAGCAGCAACAGTAGGACCAG
GGCATTCCTCTGTGTCGGTGGTGAGGGCAGGGTGGGGAGGATGATCGTGC
T back to topCoding sequence (CDS) from alignment at scaffold_9:689154..693154- >mRNA_4815 ID=mRNA_4815|Name=jgi.p|Nanoce1779_2|587990|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at scaffold_9:689154..693154- (Nannochloropsis oceanica)
ATGTTACCGCTGCTGCTGGGGAGGAGAGAGAGGGAGGACGCGGAGGGCAG
GAGGGAGGGAGGGACAGGAGGAGCAGCTGCAGTAGTGGACGTCGAAGAGG
AGACGTCATCGACGAAAGGCAAATCTTTGACGGTCAGGTCTGTGGCAACA
AAGGGGTTTGGTAACGGCAAGGCCAGCCGCGGTTCCTGTTGCTGCTGCAC
CTTCCCCATTTTCGCCCCCGTTGTATCAGCAGAAGTAGAAGCAGCAGCAG
CAGCAAAACTATCCGTCCACGCCTGCAACGTCTTCCCGGGGATTTTTTCC
CGTGTGAAATGCACACCGAATCTCGGCTCCTTCTCCACAGGCACCCCCTC
AATCACATGCCCCTCCTTCCCGCCCTCCACCCCGCCCTTATCCTGCTGCT
CTGCTGCATCCAACAACCCCGCCCTCCCAAAACAGGAACTTATCAAATCG
ACCCTACACTTGGCTGGGTCCTTAATCACCCGCATAATTGCCTCCAACCA
CTCGGGCCGCCACTCCCACATCAAGAAGGGCGCCTGCAACATCTCCTCCT
TCCTAAACCTGTACATGGGCAGCAACCCCACACACAGCTGTTCCGCCAGC
TCCCCGCTCTCGATCTCCTCCTGGTATTTATACTGCATGGCACTGATCGC
AGACAGCTCGTCAAAGATCCATTTTTGCCACCCTTCCCTCCTCATCACCC
CCAAATAA back to top
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