jgi.p|Nanoce1779_2|573112, mRNA_1694 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573112
Unique Name	mRNA_1694
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1295
Alignment location	scaffold_1:1252896..1254581 -

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Properties


Property Name	Value
TranscriptId	573198
Track	FilteredModels2
ProteinId	573112

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1252896..1254581 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573112	gene_1694	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573112	mRNA_1694-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1694	CDS_1694	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1252896..1254581-
coding sequence from alignment at scaffold_1:1252896..1254581-

mRNA sequence

>mRNA_1694 ID=mRNA_1694|Name=jgi.p|Nanoce1779_2|573112|organism=Nannochloropsis oceanica|type=mRNA|length=1295bp
AAAAAATACAGCGCCCAGCTCGGAGGGATGATCAGCGGGCGCGTGGACCT
AGACGGAATCCTACGGCAGGTGAACTGCTACCACAATGTGGCTCGTGTCC
GTGCAGACGTGATTGCCTGCATTGCTCAGGTCCGCACGCTCATTCCCAAA
AAGGAGCGACTCATACACAACAATGGCATGGAAAGCGAGCTGTTGGTGCT
GCATGGCACGGTAGCCATCAACTACCAAGGCAGGCAGTACAACATTCCTG
TCGAGGTGTATGTAAGTGAGCCTTACCCCGAGGCACCTCCCCGCTGCTAC
GTCCGTCCAACCAAGGACATGGATATAAAAGTGGGCCATCGCCATGTAGA
CCGTGAAGGATTGGTCTACCTCCCATACCTGCACGAATGGACTGCACGCT
CACATAATTTGACGGAGCTGTGCGCGGCTATGAGTAGTGTGTTCGGCATG
GACCCCCCTGTCTATGCGATCAAAAAGCCTGGTACTGGGTCGGCTTCTCC
GACTCCTGTCGCTGTTGCGACTGCTGCCTCATTTTCGACGAGTCTTTACC
CAGGTCAAGTAGGAGGCGGAGGAGGAGGGAGTGGGCGATATACGCCGGTG
GGGCAGCAGGTGCAGCAACCGTCGCCGCCGCCATCATACAGCAGCGTAAC
GACCCCTGTGCAGGAGGAGCAGTACCAGGCCGAAGCCAAGAAAAGGGAGG
CAATGCAGCAGGTTCTTAGTAAGACACAACGAGCATTGAAAGCATTTTAT
GGAAAGGTGACGACGGAATTGGGGGAGGAGCAGGAGAAGGAGGCGGCACT
TCAGGCGCACCGGAAGGAAGTACAGGCGAGCTTGGGGGCGATGAAGAAGA
AGAAGGAGGAGGTGGAGGAGAGGATCAGGAGGGTGATGGAAATGGATGGG
CGGTTGGAGAAATGGATGGCAGAGCAGGCGTCAAGGCCAGTGATTCCCGT
GGATGACCTGGTGGAGGCGGCCGATCCTCCCTCGAGACAGATGTTGGAAT
TAGTGGCTGAAAACGCGGCGATTGAGGATGCACTGTACCACCTGGACAAG
GCCTTAGCAAAGAACAGTGTGGACCTACAAGTCTTCTTGAAGAAGGTCAG
GGAGCTGGCGCGGGAGCAGTTGATGTGTGTGGCGCACGTGAACAAAATTT
ACAGAGCACAGCAGGCCGCATTGGTGGCGGCAAGGGCAGCACCGCTGCAG
AATCGAGCGGTAGGGGCGGGAAGAGGAGGAGGGGGAGGGAGCATTGCATA
CCCCTCCATCCCACCGGCGATGTCCCGGTGAGTGAGATAGGGGGG

protein sequence of jgi.p|Nanoce1779_2|573112

>mRNA_1694-protein ID=mRNA_1694-protein|Name=jgi.p|Nanoce1779_2|573112|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MISGRVDLDGILRQVNCYHNVARVRADVIACIAQVRTLIPKKERLIHNNG
MESELLVLHGTVAINYQGRQYNIPVEVYVSEPYPEAPPRCYVRPTKDMDI
KVGHRHVDREGLVYLPYLHEWTARSHNLTELCAAMSSVFGMDPPVYAIKK
PGTGSASPTPVAVATAASFSTSLYPGQVGGGGGGSGRYTPVGQQVQQPSP
PPSYSSVTTPVQEEQYQAEAKKREAMQQVLSKTQRALKAFYGKVTTELGE
EQEKEAALQAHRKEVQASLGAMKKKKEEVEERIRRVMEMDGRLEKWMAEQ
ASRPVIPVDDLVEAADPPSRQMLELVAENAAIEDALYHLDKALAKNSVDL
QVFLKKVRELAREQLMCVAHVNKIYRAQQAALVAARAAPLQNRAVGAGRG
GGGGSIAYPSIPPAMSR*

mRNA from alignment at scaffold_1:1252896..1254581-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1694 ID=mRNA_1694|Name=jgi.p|Nanoce1779_2|573112|organism=Nannochloropsis oceanica|type=mRNA|length=1686bp|location=Sequence derived from alignment at scaffold_1:1252896..1254581- (Nannochloropsis oceanica)
AAAAAATACAGCGCCCAGCTCGGAGGGATGATCAGCGGGCGCGTGGACCT
AGACGGAATCCTACGGCAGGTGAACTGCTACCACAATGTGGCTCGTGTCC
GTGCAGACGTGATTGCCTGCATTGCTCAGGTATGACACTCCCTTTTTCCC
TTCTCCCTTCCACCCTCCCTTTGCTAGCATGCTATGACCGTTCGACAACT
CAATGCGGCCTTTGAGCGATACTGTGAGCGTCTCCGATGTATTGTGCGTA
ATTGCTAATCTCGGGTCGAAATTATTCGAAGAAATCTACCAGACTGCCGA
GTCCGCTCAGCTTATGCGCCTCTCCCTCACTCACCCACCCACCGCTTACT
CCTTTGTCCTCCAGGTCCGCACGCTCATTCCCAAAAAGGAGCGACTCATA
CACAACAATGGCATGGAAAGCGAGCTGTTGGTGCTGCATGGCACGGTAGC
CATCAACTACCAAGGCAGGCAGTACAACATTCCTGTCGAGGTGTATGTAA
GTGAGCCTTACCCCGAGGTAAGAACCAAGACCGATCAGGGAGGAGGAGAT
GTGTTTGGAAGGAAGTAAGAAAGAGTGGAGAGGAATCGGAGGGGAAATGT
CATTCCTGTCAAGCCCTTAACATTTGATTAATGATCATTGTTTCTCATTT
CCTCCCTCCTCCCTCACGCCTAGGCACCTCCCCGCTGCTACGTCCGTCCA
ACCAAGGACATGGATATAAAAGTGGGCCATCGCCATGTAGACCGTGAAGG
ATTGGTCTACCTCCCATACCTGCACGAATGGACTGCACGCTCACATAATT
TGACGGAGCTGTGCGCGGCTATGAGTAGTGTGTTCGGCATGGACCCCCCT
GTCTATGCGATCAAAAAGCCTGGTACTGGGTCGGCTTCTCCGACTCCTGT
CGCTGTTGCGACTGCTGCCTCATTTTCGACGAGTCTTTACCCAGGTCAAG
TAGGAGGCGGAGGAGGAGGGAGTGGGCGATATACGCCGGTGGGGCAGCAG
GTGCAGCAACCGTCGCCGCCGCCATCATACAGCAGCGTAACGACCCCTGT
GCAGGAGGAGCAGTACCAGGCCGAAGCCAAGAAAAGGGAGGCAATGCAGC
AGGTTCTTAGTAAGACACAACGAGCATTGAAAGCATTTTATGGAAAGGTG
ACGACGGAATTGGGGGAGGAGCAGGAGAAGGAGGCGGCACTTCAGGCGCA
CCGGAAGGAAGTACAGGCGAGCTTGGGGGCGATGAAGAAGAAGAAGGAGG
AGGTGGAGGAGAGGATCAGGAGGGTGATGGAAATGGATGGGCGGTTGGAG
AAATGGATGGCAGAGCAGGCGTCAAGGCCAGTGATTCCCGTGGATGACCT
GGTGGAGGCGGCCGATCCTCCCTCGAGACAGATGTTGGAATTAGTGGCTG
AAAACGCGGCGATTGAGGATGCACTGTACCACCTGGACAAGGCCTTAGCA
AAGAACAGTGTGGACCTACAAGTCTTCTTGAAGAAGGTCAGGGAGCTGGC
GCGGGAGCAGTTGATGTGTGTGGCGCACGTGAACAAAATTTACAGAGCAC
AGCAGGCCGCATTGGTGGCGGCAAGGGCAGCACCGCTGCAGAATCGAGCG
GTAGGGGCGGGAAGAGGAGGAGGGGGAGGGAGCATTGCATACCCCTCCAT
CCCACCGGCGATGTCCCGGTGAGTGAGATAGGGGGG

Coding sequence (CDS) from alignment at scaffold_1:1252896..1254581-

>mRNA_1694 ID=mRNA_1694|Name=jgi.p|Nanoce1779_2|573112|organism=Nannochloropsis oceanica|type=CDS|length=3762bp|location=Sequence derived from alignment at scaffold_1:1252896..1254581- (Nannochloropsis oceanica)
GCACCTCCCCGCTGCTACGTCCGTCCAACCAAGGACATGGATATAAAAGT
GGGCCATCGCCATGTAGACCGTGAAGGATTGGTCTACCTCCCATACCTGC
ACGAATGGACTGCACGCTCACATAATTTGACGGAGCTGTGCGCGGCTATG
AGTAGTGTGTTCGGCATGGACCCCCCTGTCTATGCGATCAAAAAGCCTGG
TACTGGGTCGGCTTCTCCGACTCCTGTCGCTGTTGCGACTGCTGCCTCAT
TTTCGACGAGTCTTTACCCAGGTCAAGTAGGAGGCGGAGGAGGAGGGAGT
GGGCGATATACGCCGGTGGGGCAGCAGGTGCAGCAACCGTCGCCGCCGCC
ATCATACAGCAGCGTAACGACCCCTGTGCAGGAGGAGCAGTACCAGGCCG
AAGCCAAGAAAAGGGAGGCAATGCAGCAGGTTCTTAGTAAGACACAACGA
GCATTGAAAGCATTTTATGGAAAGGTGACGACGGAATTGGGGGAGGAGCA
GGAGAAGGAGGCGGCACTTCAGGCGCACCGGAAGGAAGTACAGGCGAGCT
TGGGGGCGATGAAGAAGAAGAAGGAGGAGGTGGAGGAGAGGATCAGGAGG
GTGATGGAAATGGATGGGCGGTTGGAGAAATGGATGGCAGAGCAGGCGTC
AAGGCCAGTGATTCCCGTGGATGACCTGGTGGAGGCGGCCGATCCTCCCT
CGAGACAGATGTTGGAATTAGTGGCTGAAAACGCGGCGATTGAGGATGCA
CTGTACCACCTGGACAAGGCCTTAGCAAAGAACAGTGTGGACCTACAAGT
CTTCTTGAAGAAGGTCAGGGAGCTGGCGCGGGAGCAGTTGATGTGTGTGG
CGCACGTGAACAAAATTTACAGAGCACAGCAGGCCGCATTGGTGGCGGCA
AGGGCAGCACCGCTGCAGAATCGAGCGGTAGGGGCGGGAAGAGGAGGAGG
GGGAGGGAGCATTGCATACCCCTCCATCCCACCGGCGATGTCCCGGTGAG
TCCGCACGCTCATTCCCAAAAAGGAGCGACTCATACACAACAATGGCATG
GAAAGCGAGCTGTTGGTGCTGCATGGCACGGTAGCCATCAACTACCAAGG
CAGGCAGTACAACATTCCTGTCGAGGTGTATGTAAGTGAGCCTTACCCCG
AGATGATCAGCGGGCGCGTGGACCTAGACGGAATCCTACGGCAGGTGAAC
TGCTACCACAATGTGGCTCGTGTCCGTGCAGACGTGATTGCCTGCATTGC
TCAGGCACCTCCCCGCTGCTACGTCCGTCCAACCAAGGACATGGATATAA
AAGTGGGCCATCGCCATGTAGACCGTGAAGGATTGGTCTACCTCCCATAC
CTGCACGAATGGACTGCACGCTCACATAATTTGACGGAGCTGTGCGCGGC
TATGAGTAGTGTGTTCGGCATGGACCCCCCTGTCTATGCGATCAAAAAGC
CTGGTACTGGGTCGGCTTCTCCGACTCCTGTCGCTGTTGCGACTGCTGCC
TCATTTTCGACGAGTCTTTACCCAGGTCAAGTAGGAGGCGGAGGAGGAGG
GAGTGGGCGATATACGCCGGTGGGGCAGCAGGTGCAGCAACCGTCGCCGC
CGCCATCATACAGCAGCGTAACGACCCCTGTGCAGGAGGAGCAGTACCAG
GCCGAAGCCAAGAAAAGGGAGGCAATGCAGCAGGTTCTTAGTAAGACACA
ACGAGCATTGAAAGCATTTTATGGAAAGGTGACGACGGAATTGGGGGAGG
AGCAGGAGAAGGAGGCGGCACTTCAGGCGCACCGGAAGGAAGTACAGGCG
AGCTTGGGGGCGATGAAGAAGAAGAAGGAGGAGGTGGAGGAGAGGATCAG
GAGGGTGATGGAAATGGATGGGCGGTTGGAGAAATGGATGGCAGAGCAGG
CGTCAAGGCCAGTGATTCCCGTGGATGACCTGGTGGAGGCGGCCGATCCT
CCCTCGAGACAGATGTTGGAATTAGTGGCTGAAAACGCGGCGATTGAGGA
TGCACTGTACCACCTGGACAAGGCCTTAGCAAAGAACAGTGTGGACCTAC
AAGTCTTCTTGAAGAAGGTCAGGGAGCTGGCGCGGGAGCAGTTGATGTGT
GTGGCGCACGTGAACAAAATTTACAGAGCACAGCAGGCCGCATTGGTGGC
GGCAAGGGCAGCACCGCTGCAGAATCGAGCGGTAGGGGCGGGAAGAGGAG
GAGGGGGAGGGAGCATTGCATACCCCTCCATCCCACCGGCGATGTCCCGG
TGAGTCCGCACGCTCATTCCCAAAAAGGAGCGACTCATACACAACAATGG
CATGGAAAGCGAGCTGTTGGTGCTGCATGGCACGGTAGCCATCAACTACC
AAGGCAGGCAGTACAACATTCCTGTCGAGGTGTATGTAAGTGAGCCTTAC
CCCGAGATGATCAGCGGGCGCGTGGACCTAGACGGAATCCTACGGCAGGT
GAACTGCTACCACAATGTGGCTCGTGTCCGTGCAGACGTGATTGCCTGCA
TTGCTCAGGCACCTCCCCGCTGCTACGTCCGTCCAACCAAGGACATGGAT
ATAAAAGTGGGCCATCGCCATGTAGACCGTGAAGGATTGGTCTACCTCCC
ATACCTGCACGAATGGACTGCACGCTCACATAATTTGACGGAGCTGTGCG
CGGCTATGAGTAGTGTGTTCGGCATGGACCCCCCTGTCTATGCGATCAAA
AAGCCTGGTACTGGGTCGGCTTCTCCGACTCCTGTCGCTGTTGCGACTGC
TGCCTCATTTTCGACGAGTCTTTACCCAGGTCAAGTAGGAGGCGGAGGAG
GAGGGAGTGGGCGATATACGCCGGTGGGGCAGCAGGTGCAGCAACCGTCG
CCGCCGCCATCATACAGCAGCGTAACGACCCCTGTGCAGGAGGAGCAGTA
CCAGGCCGAAGCCAAGAAAAGGGAGGCAATGCAGCAGGTTCTTAGTAAGA
CACAACGAGCATTGAAAGCATTTTATGGAAAGGTGACGACGGAATTGGGG
GAGGAGCAGGAGAAGGAGGCGGCACTTCAGGCGCACCGGAAGGAAGTACA
GGCGAGCTTGGGGGCGATGAAGAAGAAGAAGGAGGAGGTGGAGGAGAGGA
TCAGGAGGGTGATGGAAATGGATGGGCGGTTGGAGAAATGGATGGCAGAG
CAGGCGTCAAGGCCAGTGATTCCCGTGGATGACCTGGTGGAGGCGGCCGA
TCCTCCCTCGAGACAGATGTTGGAATTAGTGGCTGAAAACGCGGCGATTG
AGGATGCACTGTACCACCTGGACAAGGCCTTAGCAAAGAACAGTGTGGAC
CTACAAGTCTTCTTGAAGAAGGTCAGGGAGCTGGCGCGGGAGCAGTTGAT
GTGTGTGGCGCACGTGAACAAAATTTACAGAGCACAGCAGGCCGCATTGG
TGGCGGCAAGGGCAGCACCGCTGCAGAATCGAGCGGTAGGGGCGGGAAGA
GGAGGAGGGGGAGGGAGCATTGCATACCCCTCCATCCCACCGGCGATGTC
CCGGTGAGTCCGCACGCTCATTCCCAAAAAGGAGCGACTCATACACAACA
ATGGCATGGAAAGCGAGCTGTTGGTGCTGCATGGCACGGTAGCCATCAAC
TACCAAGGCAGGCAGTACAACATTCCTGTCGAGGTGTATGTAAGTGAGCC
TTACCCCGAGATGATCAGCGGGCGCGTGGACCTAGACGGAATCCTACGGC
AGGTGAACTGCTACCACAATGTGGCTCGTGTCCGTGCAGACGTGATTGCC
TGCATTGCTCAG

Synonyms

Publications