jgi.p|Nanoce1779_2|565926, mRNA_4507 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565926
Unique NamemRNA_4507
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length717
Alignment locationscaffold_10:770535..771484 +

Link to JBrowse

Properties
Property NameValue
TranscriptId566012
TrackFilteredModels2
ProteinId565926
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:770535..771484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565926gene_4507Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565926mRNA_4507-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4507CDS_4507Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4507 ID=mRNA_4507|Name=jgi.p|Nanoce1779_2|565926|organism=Nannochloropsis oceanica|type=mRNA|length=717bp
ATGACCGATGTCGTCGCCGAGGCCCTGGCGGGGCTTGGCTTGAAATTACG
GCGTGATTGGTTGGAAGAATGCCTCCACAATATCCCACCGCCTGCTGGTG
GCCGCGGTGGCAATGACGATCAAACGCTGGGCTACGTGTACGATCGCTTT
TTGCACTCTGACTTACGTGTATCAGGTGCCGGCTGCTTCCCGTCTAATCT
GGCCACGGTAAGGGACGAGCACCTTCGAGGCCCGATGATCGTGCAGATGG
ATGCTCTCAAGAATATTGCCTCCTCAGCGATGGATCAAAAGGAAGGCAAA
GGGGGCCGGATGCTTCTTTTGGCCCTGTCCGATGGGGTCCAGCTCGCAGT
AGGGTTGGAATACAGACACATCGCTGCGTTTCAAATGAAGCCACCACCAC
CCATGGGCCTCAAAATTGCTTTACGTAATGTGAGAGTAAAGGAAGGCATG
CTGCTCCTGACCCGCGAAACGGTGCAAATTTTGGGGGGTGACAATGGCAA
ACCTCCTCTGCCGGAGGTTGAGGCTCCGGGCTCTGAAGAAAAGGCCCGAT
TAAAGGCAGCGGGCCGCATATTATCTGTCCGTTCACCTCCTTTGCCTTTG
CATCGGCGAGGGCGGGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCGCTGCCTCCATCACTAATAAACAGCGCAGCAGCAGCAG
TGTACCTCTCCATCTAG
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protein sequence of jgi.p|Nanoce1779_2|565926

>mRNA_4507-protein ID=mRNA_4507-protein|Name=jgi.p|Nanoce1779_2|565926|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MTDVVAEALAGLGLKLRRDWLEECLHNIPPPAGGRGGNDDQTLGYVYDRF
LHSDLRVSGAGCFPSNLATVRDEHLRGPMIVQMDALKNIASSAMDQKEGK
GGRMLLLALSDGVQLAVGLEYRHIAAFQMKPPPPMGLKIALRNVRVKEGM
LLLTRETVQILGGDNGKPPLPEVEAPGSEEKARLKAAGRILSVRSPPLPL
HRRGRVQQQQQQQQQQQQQQPLPPSLINSAAAAVYLSI*
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mRNA from alignment at scaffold_10:770535..771484+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4507 ID=mRNA_4507|Name=jgi.p|Nanoce1779_2|565926|organism=Nannochloropsis oceanica|type=mRNA|length=950bp|location=Sequence derived from alignment at scaffold_10:770535..771484+ (Nannochloropsis oceanica)
ATGACCGATGTCGTCGCCGAGGCCCTGGCGGGGCTTGGCTTGAAATTACG
GCGTGATTGGTTGGAAGAATGCCTCCACAATATCCCACCGCCTGCTGGTG
GCCGCGGTGGCAATGACGATCAAACGCTGGGCTACGTGTACGATCGCTTT
TTGCACTCTGACTTACGTGTATCAGGTGCCGGCTGCTTCCCGTCTAATCT
GGCCACGGTAAGGGACGAGCACCTTCGAGGCCCGATGATCGTGCAGATGG
ATGCTCTCAAGAATATTGCCTCCTCAGCGATGGATCAAAAGGAAGGCAAA
GGGGGCCGGATGCTTCTTTTGGCCCTGTCCGATGGGGTCCAGCTCGCAGT
AGGGTTGGAATACAGACACATCGCTGCGTTTCAAATGAAGCCACCACCAC
CCATGGGCCTCAAAATTGCTTTACGTAATGTGAGAGTAAAGGAAGGCATG
CTGCTCCTGACCCGCGAAACGGTGCAAATTTTGGGGGGTGACAATGGCAA
ACCTCCTCTGCCGGAGGTTGAGGCTCCGGGCTCTGAAGAAAAGGCCCGAT
TAAAGGCAGCGGGCCGCATATTATCTGTCCGTTCACCTCCTTTGCCTTTG
CATCGGCGAGGGCGGGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCGCTGCCTCCATCACTAATAAACAGCGGTGAGGTAGGAG
GAAGGATAGGTCGTGGGGGAGAAAGAGAAGGAGGAGGAGGGAGGAGAGGA
AGAGGAGGAGAAGGAGAAGGAGAAGAAGATCGTGTTCCTGAGAAATCAGG
GTGGGCTCAGTTTGATGATGATGATATAGACTGGGGAGCGCTCGACGTTC
CGACAGGGGGCTCCAAGCCCCCCTCCGCTTCTCCCTCCACCTCTACTACC
ATTGCTGGATTATTGCAACAGCAGCAGCAGCAGTGTACCTCTCCATCTAG
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Coding sequence (CDS) from alignment at scaffold_10:770535..771484+

>mRNA_4507 ID=mRNA_4507|Name=jgi.p|Nanoce1779_2|565926|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_10:770535..771484+ (Nannochloropsis oceanica)
ATGACCGATGTCGTCGCCGAGGCCCTGGCGGGGCTTGGCTTGAAATTACG
GCGTGATTGGTTGGAAGAATGCCTCCACAATATCCCACCGCCTGCTGGTG
GCCGCGGTGGCAATGACGATCAAACGCTGGGCTACGTGTACGATCGCTTT
TTGCACTCTGACTTACGTGTATCAGGTGCCGGCTGCTTCCCGTCTAATCT
GGCCACGGTAAGGGACGAGCACCTTCGAGGCCCGATGATCGTGCAGATGG
ATGCTCTCAAGAATATTGCCTCCTCAGCGATGGATCAAAAGGAAGGCAAA
GGGGGCCGGATGCTTCTTTTGGCCCTGTCCGATGGGGTCCAGCTCGCAGT
AGGGTTGGAATACAGACACATCGCTGCGTTTCAAATGAAGCCACCACCAC
CCATGGGCCTCAAAATTGCTTTACGTAATGTGAGAGTAAAGGAAGGCATG
CTGCTCCTGACCCGCGAAACGGTGCAAATTTTGGGGGGTGACAATGGCAA
ACCTCCTCTGCCGGAGGTTGAGGCTCCGGGCTCTGAAGAAAAGGCCCGAT
TAAAGGCAGCGGGCCGCATATTATCTGTCCGTTCACCTCCTTTGCCTTTG
CATCGGCGAGGGCGGGTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCCGCTGCCTCCATCACTAATAAACAGCGCAGCAGCAGCAG
TGTACCTCTCCATCTAGATGACCGATGTCGTCGCCGAGGCCCTGGCGGGG
CTTGGCTTGAAATTACGGCGTGATTGGTTGGAAGAATGCCTCCACAATAT
CCCACCGCCTGCTGGTGGCCGCGGTGGCAATGACGATCAAACGCTGGGCT
ACGTGTACGATCGCTTTTTGCACTCTGACTTACGTGTATCAGGTGCCGGC
TGCTTCCCGTCTAATCTGGCCACGGTAAGGGACGAGCACCTTCGAGGCCC
GATGATCGTGCAGATGGATGCTCTCAAGAATATTGCCTCCTCAGCGATGG
ATCAAAAGGAAGGCAAAGGGGGCCGGATGCTTCTTTTGGCCCTGTCCGAT
GGGGTCCAGCTCGCAGTAGGGTTGGAATACAGACACATCGCTGCGTTTCA
AATGAAGCCACCACCACCCATGGGCCTCAAAATTGCTTTACGTAATGTGA
GAGTAAAGGAAGGCATGCTGCTCCTGACCCGCGAAACGGTGCAAATTTTG
GGGGGTGACAATGGCAAACCTCCTCTGCCGGAGGTTGAGGCTCCGGGCTC
TGAAGAAAAGGCCCGATTAAAGGCAGCGGGCCGCATATTATCTGTCCGTT
CACCTCCTTTGCCTTTGCATCGGCGAGGGCGGGTGCAGCAGCAACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCTGCCTCCATCACTAATAAA
CAGCGCAGCAGCAGCAGTGTACCTCTCCATCTAG
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Synonyms
Publications