jgi.p|Nanoce1779_2|588699, mRNA_4310 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588699
Unique NamemRNA_4310
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1615
Alignment locationscaffold_10:263750..265519 -

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Properties
Property NameValue
TranscriptId588785
TrackFilteredModels2
ProteinId588699
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:263750..265519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588699gene_4310Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588699mRNA_4310-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4310CDS_4310Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4310 ID=mRNA_4310|Name=jgi.p|Nanoce1779_2|588699|organism=Nannochloropsis oceanica|type=mRNA|length=1615bp
AGCGGCGTATACAGCCATCCCCGTACATCCTAACAACGTCGACAAGCACC
ACATTTACACATGGATGAGCCACTCTGTGGCTGCACTACAGACGCCACCG
ACGCCGGCATCGACTTCAGCCTGAATGGGAATGATGCGCCTCGGACAATC
GCAACGTCCTTGCGCCCTCCCCCTCAACCCACATCCTCCTCCCCATCACA
AGCGCCAGGCTCCATCCCTAACCCTGTCCACCGTACCGACTCGACAACCT
CAACATCATCCATCACCAGCAATGGCGGCCCCGCAGCTGCTGGCTTTGAG
GTCTCATCTGCGTGGTCTGTCGCAGGGGTGGGCACGTGCATCCAGCTCCG
CCACCGCGCCTTTGGCTTGCACATAGCTATGGACTTGGGCACCAGCGCGT
GGGAAGCCTTGAGGGCCAATCATGTGTTTGTCTCGCATTCGCACATTGAT
CATATTGGTGCTTTGTTGAACCACGCTCGTGCTCGGACCTTGAGCAATAA
ACCAGCCAAATATTACGTTCCTCTCTCGGCGGTGGAGCCCTTGCTGCAAG
CCAAAGCCGCATATGAAGTGCTGGACGGCCATGCCTTCCAAGCAGACATT
ACGGGGGTCAAGCCCGGAGATGTTATACGCATCCATCCCAACGTCAAAGC
AAGAGTGTTTCTAACGAAGCATAGAGTGCCTAGTCAGGGGTATGCATTAA
TTCGGGAGAAAAGCAAGGGCCTGAAGGCTGAATTTCGGCACTTGTCGTCG
CGGGAGTTGGCGTTTCGGAGGAAAGGGGGGGAGGAGGTGACAGAAACCGA
GGAGATTGTCGAAGTTGCTTACACAGGAGACACTATGTTAGACGCGATTT
TGGCTGAACCGCTGGTGACGCAGGCCAGGTTGTTGATCGTCGAGTGCACT
TACCTTGAAGGTGAAATTATCTGGGCTCACAAATGGTGCCATGTCCACAT
CCACGAGCTCATCCAGCACCTGGACACCTTCGCGCAAAACGAGCGCATCC
TCCTTTGCCACGTCTCGAGGAAATACAAGCTATGGGAAAATGTCCTCCGT
CTCGTCCGCGCGGCCATCGTGGTCGCTCCCGAGCTGGCAGCGAAGACAGG
AGTCACTCTAGCAGGGTTTGGGAGACCCGAGCCTGTTACCTGGTTGTCAG
AGTTGGAGGAAGCAGAGAGCGGAGGGGGAGGAGGGATGGAGGAGGCGACT
GAGGGCGTGAGGGAGGGGGAGTTGGTGGGAAATCTACCACAGCGGTCTGC
AGGAGGGAGAGGGCGTGTGCCTCCGATGAGGGTAGCGGCGACAGTGGCGT
TGGCGGCCGGAAAGTGGGTGGGAGCGGACGGGGTGATGGAGGAGGAGCTG
CCGGAGGTGAAGACGAGAGAGGAAGCGAATCGAATGCTTAGGGTAATGTC
GGAGGACTTGGGGTTGAGGCCTCGAGCGGGTTCCTTTGTGAAGGGGCCGG
GGGAGGACGAGGGAGAGAGGAGGGAAGGTGAGGTTGAGGGGAGGGGGAGA
GGGAGTCGGGATGAAGCGGGGTTGATTACGAAAACGACGACGACGACGAC
GACTGAGGAGGAGGAGGGGGGGGCGGAGGAGGCTTCTTTGTTGTTTTAGG
AGCTGCAGAAGAGAG
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protein sequence of jgi.p|Nanoce1779_2|588699

>mRNA_4310-protein ID=mRNA_4310-protein|Name=jgi.p|Nanoce1779_2|588699|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MDEPLCGCTTDATDAGIDFSLNGNDAPRTIATSLRPPPQPTSSSPSQAPG
SIPNPVHRTDSTTSTSSITSNGGPAAAGFEVSSAWSVAGVGTCIQLRHRA
FGLHIAMDLGTSAWEALRANHVFVSHSHIDHIGALLNHARARTLSNKPAK
YYVPLSAVEPLLQAKAAYEVLDGHAFQADITGVKPGDVIRIHPNVKARVF
LTKHRVPSQGYALIREKSKGLKAEFRHLSSRELAFRRKGGEEVTETEEIV
EVAYTGDTMLDAILAEPLVTQARLLIVECTYLEGEIIWAHKWCHVHIHEL
IQHLDTFAQNERILLCHVSRKYKLWENVLRLVRAAIVVAPELAAKTGVTL
AGFGRPEPVTWLSELEEAESGGGGGMEEATEGVREGELVGNLPQRSAGGR
GRVPPMRVAATVALAAGKWVGADGVMEEELPEVKTREEANRMLRVMSEDL
GLRPRAGSFVKGPGEDEGERREGEVEGRGRGSRDEAGLITKTTTTTTTEE
EEGGAEEASLLF*
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mRNA from alignment at scaffold_10:263750..265519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4310 ID=mRNA_4310|Name=jgi.p|Nanoce1779_2|588699|organism=Nannochloropsis oceanica|type=mRNA|length=1770bp|location=Sequence derived from alignment at scaffold_10:263750..265519- (Nannochloropsis oceanica)
AGCGGCGTATACAGCCATCCCCGTACATCCTAACAACGTCGACAAGCACC
ACATTTACACATGGATGAGCCACTCTGTGGCTGCACTACAGACGCCACCG
ACGCCGGCATCGACTTCAGCCTGAATGGGAATGATGCGCCTCGGACAATC
GCAACGTCCTTGCGCCCTCCCCCTCAACCCACATCCTCCTCCCCATCACA
AGCGCCAGGCTCCATCCCTAACCCTGTCCACCGTACCGACTCGACAACCT
CAACATCATCCATCACCAGCAATGGCGGCCCCGCAGCTGCTGGCTTTGAG
GTCTCATCTGCGTGGTCTGTCGCAGGGGTGGGCACGTGCATCCAGCTCCG
CCACCGCGCCTTTGGCTTGCACATAGCTATGGACTTGGGCACCAGCGCGT
GGGAAGCCTTGAGGGCCAATCATGTGTTTGTCTCGCATTCGCACATTGAT
CATATTGGTGCTTTGTTGAACCACGCTCGTGCTCGGACCTTGAGCAATAA
ACCAGCCAAATATTACGTTCCTCTCTCGGCGGTGGAGCCCTTGCTGCAAG
CCAAAGCCGCATATGAAGTGCTGGACGGCCATGCCTTCCAAGCAGACATT
ACGGGGGTCAAGCCCGGAGATGTTATACGCATCCATCCCAACGTCAAAGC
AAGAGTGTTTCTAACGAAGCATAGAGTGCCTAGTCAGGGGTATGCATTAA
TTCGGGAGAAAAGCAAGGGCCTGAAGGCTGAATTTCGGCACTTGTCGTCG
CGGGAGTTGGCGTTTCGGAGGAAAGGGGGGGAGGAGGTGACAGAAACCGA
GGAGATTGTCGAAGTTGCTTACACAGGAGACACTATGTTAGACGCGATTT
TGGCTGAACCGCTGGTGACGCAGGCCAGGTTGTTGATCGTCGAGTGCACT
TACCTTGAAGGTGAAGGAGGGAGGGAGCGAGGAGACGATAGGGGAGACGA
GGGGAAACGGGAGAAAGAGGCTTTGCGAAGAACGGGACCACCTTACTCTT
CAGCTATTTAGGTGAGGTAGTTTTCTACAATCACGCACTCAAGCACAGCC
TTTTCAAATACACAGGTGAAATTATCTGGGCTCACAAATGGTGCCATGTC
CACATCCACGAGCTCATCCAGCACCTGGACACCTTCGCGCAAAACGAGCG
CATCCTCCTTTGCCACGTCTCGAGGAAATACAAGCTATGGGAAAATGTCC
TCCGTCTCGTCCGCGCGGCCATCGTGGTCGCTCCCGAGCTGGCAGCGAAG
ACAGGAGTCACTCTAGCAGGGTTTGGGAGACCCGAGCCTGTTACCTGGTT
GTCAGAGTTGGAGGAAGCAGAGAGCGGAGGGGGAGGAGGGATGGAGGAGG
CGACTGAGGGCGTGAGGGAGGGGGAGTTGGTGGGAAATCTACCACAGCGG
TCTGCAGGAGGGAGAGGGCGTGTGCCTCCGATGAGGGTAGCGGCGACAGT
GGCGTTGGCGGCCGGAAAGTGGGTGGGAGCGGACGGGGTGATGGAGGAGG
AGCTGCCGGAGGTGAAGACGAGAGAGGAAGCGAATCGAATGCTTAGGGTA
ATGTCGGAGGACTTGGGGTTGAGGCCTCGAGCGGGTTCCTTTGTGAAGGG
GCCGGGGGAGGACGAGGGAGAGAGGAGGGAAGGTGAGGTTGAGGGGAGGG
GGAGAGGGAGTCGGGATGAAGCGGGGTTGATTACGAAAACGACGACGACG
ACGACGACTGAGGAGGAGGAGGGGGGGGCGGAGGAGGCTTCTTTGTTGTT
TTAGGAGCTGCAGAAGAGAG
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Coding sequence (CDS) from alignment at scaffold_10:263750..265519-

>mRNA_4310 ID=mRNA_4310|Name=jgi.p|Nanoce1779_2|588699|organism=Nannochloropsis oceanica|type=CDS|length=3078bp|location=Sequence derived from alignment at scaffold_10:263750..265519- (Nannochloropsis oceanica)
GTGAAATTATCTGGGCTCACAAATGGTGCCATGTCCACATCCACGAGCTC
ATCCAGCACCTGGACACCTTCGCGCAAAACGAGCGCATCCTCCTTTGCCA
CGTCTCGAGGAAATACAAGCTATGGGAAAATGTCCTCCGTCTCGTCCGCG
CGGCCATCGTGGTCGCTCCCGAGCTGGCAGCGAAGACAGGAGTCACTCTA
GCAGGGTTTGGGAGACCCGAGCCTGTTACCTGGTTGTCAGAGTTGGAGGA
AGCAGAGAGCGGAGGGGGAGGAGGGATGGAGGAGGCGACTGAGGGCGTGA
GGGAGGGGGAGTTGGTGGGAAATCTACCACAGCGGTCTGCAGGAGGGAGA
GGGCGTGTGCCTCCGATGAGGGTAGCGGCGACAGTGGCGTTGGCGGCCGG
AAAGTGGGTGGGAGCGGACGGGGTGATGGAGGAGGAGCTGCCGGAGGTGA
AGACGAGAGAGGAAGCGAATCGAATGCTTAGGGTAATGTCGGAGGACTTG
GGGTTGAGGCCTCGAGCGGGTTCCTTTGTGAAGGGGCCGGGGGAGGACGA
GGGAGAGAGGAGGGAAGGTGAGGTTGAGGGGAGGGGGAGAGGGAGTCGGG
ATGAAGCGGGGTTGATTACGAAAACGACGACGACGACGACGACTGAGGAG
GAGGAGGGGGGGGCGGAGGAGGCTTCTTTGTTGTTTTAGATGGATGAGCC
ACTCTGTGGCTGCACTACAGACGCCACCGACGCCGGCATCGACTTCAGCC
TGAATGGGAATGATGCGCCTCGGACAATCGCAACGTCCTTGCGCCCTCCC
CCTCAACCCACATCCTCCTCCCCATCACAAGCGCCAGGCTCCATCCCTAA
CCCTGTCCACCGTACCGACTCGACAACCTCAACATCATCCATCACCAGCA
ATGGCGGCCCCGCAGCTGCTGGCTTTGAGGTCTCATCTGCGTGGTCTGTC
GCAGGGGTGGGCACGTGCATCCAGCTCCGCCACCGCGCCTTTGGCTTGCA
CATAGCTATGGACTTGGGCACCAGCGCGTGGGAAGCCTTGAGGGCCAATC
ATGTGTTTGTCTCGCATTCGCACATTGATCATATTGGTGCTTTGTTGAAC
CACGCTCGTGCTCGGACCTTGAGCAATAAACCAGCCAAATATTACGTTCC
TCTCTCGGCGGTGGAGCCCTTGCTGCAAGCCAAAGCCGCATATGAAGTGC
TGGACGGCCATGCCTTCCAAGCAGACATTACGGGGGTCAAGCCCGGAGAT
GTTATACGCATCCATCCCAACGTCAAAGCAAGAGTGTTTCTAACGAAGCA
TAGAGTGCCTAGTCAGGGGTATGCATTAATTCGGGAGAAAAGCAAGGGCC
TGAAGGCTGAATTTCGGCACTTGTCGTCGCGGGAGTTGGCGTTTCGGAGG
AAAGGGGGGGAGGAGGTGACAGAAACCGAGGAGATTGTCGAAGTTGCTTA
CACAGGAGACACTATGTTAGACGCGATTTTGGCTGAACCGCTGGTGACGC
AGGCCAGGTTGTTGATCGTCGAGTGCACTTACCTTGAAGGTGAAATTATC
TGGGCTCACAAATGGTGCCATGTCCACATCCACGAGCTCATCCAGCACCT
GGACACCTTCGCGCAAAACGAGCGCATCCTCCTTTGCCACGTCTCGAGGA
AATACAAGCTATGGGAAAATGTCCTCCGTCTCGTCCGCGCGGCCATCGTG
GTCGCTCCCGAGCTGGCAGCGAAGACAGGAGTCACTCTAGCAGGGTTTGG
GAGACCCGAGCCTGTTACCTGGTTGTCAGAGTTGGAGGAAGCAGAGAGCG
GAGGGGGAGGAGGGATGGAGGAGGCGACTGAGGGCGTGAGGGAGGGGGAG
TTGGTGGGAAATCTACCACAGCGGTCTGCAGGAGGGAGAGGGCGTGTGCC
TCCGATGAGGGTAGCGGCGACAGTGGCGTTGGCGGCCGGAAAGTGGGTGG
GAGCGGACGGGGTGATGGAGGAGGAGCTGCCGGAGGTGAAGACGAGAGAG
GAAGCGAATCGAATGCTTAGGGTAATGTCGGAGGACTTGGGGTTGAGGCC
TCGAGCGGGTTCCTTTGTGAAGGGGCCGGGGGAGGACGAGGGAGAGAGGA
GGGAAGGTGAGGTTGAGGGGAGGGGGAGAGGGAGTCGGGATGAAGCGGGG
TTGATTACGAAAACGACGACGACGACGACGACTGAGGAGGAGGAGGGGGG
GGCGGAGGAGGCTTCTTTGTTGTTTTAGATGGATGAGCCACTCTGTGGCT
GCACTACAGACGCCACCGACGCCGGCATCGACTTCAGCCTGAATGGGAAT
GATGCGCCTCGGACAATCGCAACGTCCTTGCGCCCTCCCCCTCAACCCAC
ATCCTCCTCCCCATCACAAGCGCCAGGCTCCATCCCTAACCCTGTCCACC
GTACCGACTCGACAACCTCAACATCATCCATCACCAGCAATGGCGGCCCC
GCAGCTGCTGGCTTTGAGGTCTCATCTGCGTGGTCTGTCGCAGGGGTGGG
CACGTGCATCCAGCTCCGCCACCGCGCCTTTGGCTTGCACATAGCTATGG
ACTTGGGCACCAGCGCGTGGGAAGCCTTGAGGGCCAATCATGTGTTTGTC
TCGCATTCGCACATTGATCATATTGGTGCTTTGTTGAACCACGCTCGTGC
TCGGACCTTGAGCAATAAACCAGCCAAATATTACGTTCCTCTCTCGGCGG
TGGAGCCCTTGCTGCAAGCCAAAGCCGCATATGAAGTGCTGGACGGCCAT
GCCTTCCAAGCAGACATTACGGGGGTCAAGCCCGGAGATGTTATACGCAT
CCATCCCAACGTCAAAGCAAGAGTGTTTCTAACGAAGCATAGAGTGCCTA
GTCAGGGGTATGCATTAATTCGGGAGAAAAGCAAGGGCCTGAAGGCTGAA
TTTCGGCACTTGTCGTCGCGGGAGTTGGCGTTTCGGAGGAAAGGGGGGGA
GGAGGTGACAGAAACCGAGGAGATTGTCGAAGTTGCTTACACAGGAGACA
CTATGTTAGACGCGATTTTGGCTGAACCGCTGGTGACGCAGGCCAGGTTG
TTGATCGTCGAGTGCACTTACCTTGAAG
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Synonyms
Publications