jgi.p|Nanoce1779_2|555105, mRNA_4350 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555105
Unique NamemRNA_4350
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1999
Alignment locationscaffold_10:361146..363288 -

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Properties
Property NameValue
TranscriptId555191
TrackFilteredModels2
ProteinId555105
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:361146..363288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555105gene_4350Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555105mRNA_4350-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4350CDS_4350Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4350 ID=mRNA_4350|Name=jgi.p|Nanoce1779_2|555105|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp
ATGACAAGTCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACT
CCAACGGCAGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAA
GTCGGATTCATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTG
GACCTGATCAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTA
TGTGCCTGAATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCA
TTGATCAGGTTAGTGCCGGACTTTGGACTAACCTGCAGAATCGACGCCTG
CAAAATTTGGGCGGCACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTG
TCTTCCTGTGCCAAGCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCG
CGGGCGTGTTTGCTTCGGACACCGCGCCAAACCACATTTTATTGAACGAA
TATAGTAACGGACAAGGAATCGCGTTGCACAAAGATGGACCGCTTTACCA
GAACCGAGTTGCAATTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTT
GGGATCGGCCTCATTTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGC
AATTTTCCGTCGCACCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTC
TCTGCTCGTATTTGAGGGAGATGCGTATGAGAAGTACTGGCATGGCATTT
TGCGGCGGCATGAGCTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAG
GATCGCCGGATGAGTTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGC
GGACAAGGAGATGTTAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAG
AAAATGCGCGTTTTCTCATGTCAATATCGGATGACCGATAAATGAATTCA
AATGAGCGGAAATCATGAATAAAAGTGAAAGTGTATTTAATCGTTAGCAA
CATGTCTCACGCTTGGGCATACAAAAGTGTAATCGGCGGGTTCAAATGTC
TAACATGTTATCCTTCTGTTGCACGTTCCTTTAATCTTTACAAGCCACTG
TCCTCACCCTCTTCATTGATGCATCCACACACAAGTCATCGCGAATTGGA
AAGCCTAAATCGGGGCGGCGAGGGTAGCGGTGGAAAAGGTGAGGGTTTAT
GGAAAGACTGCACTTCCGGCAGGGGTATTATGGCACCTTTTACACCGCCG
TCTCCTTCAACATCGACCGACTCGCTAAGCCCAATGTAATATGCCTCGAG
CTTCTTCTTCTGACGGCGGGCTCGTTCACGGAAGCGCTGGTCCATTTCCT
TGCGCGCATCTTCAGCCCGACGGCGCTCGTTCTCTTCCCGCTCCATGGCC
GCTAGCTCCTTCTGCTCCTTTCGGACCAGCCATTCTTGCAGCTTGATATG
TCGCTGCATGCGCTTGCGCGCCCTGTTTAGCTTATCAATGAGCATCTGCT
CCTCCTTCTCCCGCTCCGTCAAGTTGTGCGGATAAACAGCACTGGTCGGA
GTGGACTGAGAGGAGCCCTCGTGGGCTTGAAGCTCGGAAGAGATCTTCAC
ACCTTCAGCTCCACGGATGCGGTAAGTCATAGCTGACGGTGGAACTTGTA
AACGAGTAAAGGAAGGCGGCGACTGGTGATATGGCGGGGCCGACCGTGAG
ATCGTATGGAAGCTTCCGTGGTTGCTGTGGTGGTCGTTGTGTTCCTGCCC
GGACAGTGGTTGTGCGTTATGAGGCAGTGCGGAAGTCGTAGGCGAGAGAT
GCCGCAGGCAATGGTCATCCAGCGGAACACACGGGCAGCTGGCGCCCTTG
CCACCGATGTAATCGTCGACATTGGGCACGAGGTCTATGAGAGCATGCCG
CAAATCCCCTTCTTGGATCTCAAATTTAAAAAATCGTGTCAACAGAGAGA
CAAAACGCTTATTTTGCTGCTCGACCTCCTGAACGCGGTGTCGAAGATTG
TTGCTAGTGTCGAGCCGGAGCGCTTCCTCTTCCTTTTGCTGGCGCCTAC
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protein sequence of jgi.p|Nanoce1779_2|555105

>mRNA_4350-protein ID=mRNA_4350-protein|Name=jgi.p|Nanoce1779_2|555105|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MTSLDFKALRKKERAKLQRQKQQENQYQNKGTLSRIHLDAPLILAHRFSL
DLIKFKVSPGAIDGIYYVPEWLSEEDARQLLEAIDQVSAGLWTNLQNRRL
QNLGGTPASATGKGMRCLPVPSYGHAMFEALVAAGVFASDTAPNHILLNE
YSNGQGIALHKDGPLYQNRVAIVSLGAPALIEFWDRPHLNDLNAPRCSGS
NFPSHPSSATVRLEHRSLLVFEGDAYEKYWHGILRRHELPAEESGDRGKE
DRRMSLTVRRVLNVCEADKEMLETAETVREEKRENARFLMSISDDR*
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mRNA from alignment at scaffold_10:361146..363288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4350 ID=mRNA_4350|Name=jgi.p|Nanoce1779_2|555105|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at scaffold_10:361146..363288- (Nannochloropsis oceanica)
ATGACAAGTCTGGACTTCAAAGCTCTGCGCAAGAAAGAGCGCGCAAAACT
CCAACGGCAGAAGCAGCAAGAAAACCAGTACCAGAACAAGGGTACGCTAA
GTCGGATTCATCTCGATGCTCCTTTGATCCTGGCACATCGCTTCAGTCTG
GACCTGATCAAATTCAAGGTCTCACCAGGCGCAATAGATGGTATTTACTA
TGTGCCTGAATGGTTGTCCGAGGAAGACGCGCGACAGCTACTGGAAGCCA
TTGATCAGGTTAGTGGTGTGACGACATTATTATTGTAAAATGAGTTAGGG
TGACATGTTGTATGTCTGTGTGTACATATCTTATTGCATAGTACAATCAA
TTTTAGGCCGTTTTCATCCTTCCTCCTTTCTTCTAATTAATCTCAAATAC
AGGCTCCAGCCGGACTTTGGACTAACCTGCAGAATCGACGCCTGCAAAAT
TTGGGCGGCACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTGTCTTCC
TGTGCCAAGCTATGGTCACGCCATGTTTGAGGCATTGGTGGCCGCGGGCG
TGTTTGCTTCGGACACCGCGCCAAACCACATTTTATTGAACGAATATAGT
AACGGACAAGGAATCGCGTTGCACAAAGATGGACCGCTTTACCAGAACCG
AGTTGCAATTGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTTGGGATC
GGCCTCATTTAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGCAATTTT
CCGTCGCACCCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTCTCTGCT
CGTATTTGAGGGAGATGCGTATGAGAAGTACTGGCATGGCATTTTGCGGC
GGCATGAGCTTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAGGATCGC
CGGATGAGTTTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGCGGACAA
GGAGATGTTAGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAGAAAATG
CGCGTTTTCTCATGTCAATATCGGATGACCGATAAATGAATTCAAATGAG
CGGAAATCATGAATAAAAGTGAAAGTGTATTTAATCGTTAGCAACATGTC
TCACGCTTGGGCATACAAAAGTGTAATCGGCGGGTTCAAATGTCTAACAT
GTTATCCTTCTGTTGCACGTTCCTTTAATCTTTACAAGCCACTGTCCTCA
CCCTCTTCATTGATGCATCCACACACAAGTCATCGCGAATTGGAAAGCCT
AAATCGGGGCGGCGAGGGTAGCGGTGGAAAAGGTGAGGGTTTATGGAAAG
ACTGCACTTCCGGCAGGGGTATTATGGCACCTTTTACACCGCCGTCTCCT
TCAACATCGACCGACTCGCTAAGCCCAATGTAATATGCCTCGAGCTTCTT
CTTCTGACGGCGGGCTCGTTCACGGAAGCGCTGGTCCATTTCCTTGCGCG
CATCTTCAGCCCGACGGCGCTCGTTCTCTTCCCGCTCCATGGCCGCTAGC
TCCTTCTGCTCCTTTCGGACCAGCCATTCTTGCAGCTTGATATGTCGCTG
CATGCGCTTGCGCGCCCTGTTTAGCTTATCAATGAGCATCTGCTCCTCCT
TCTCCCGCTCCGTCAAGTTGTGCGGATAAACAGCACTGGTCGGAGTGGAC
TGAGAGGAGCCCTCGTGGGCTTGAAGCTCGGAAGAGATCTTCACACCTTC
AGCTCCACGGATGCGGTAAGTCATAGCTGACGGTGGAACTTGTAAACGAG
TAAAGGAAGGCGGCGACTGGTGATATGGCGGGGCCGACCGTGAGATCGTA
TGGAAGCTTCCGTGGTTGCTGTGGTGGTCGTTGTGTTCCTGCCCGGACAG
TGGTTGTGCGTTATGAGGCAGTGCGGAAGTCGTAGGCGAGAGATGCCGCA
GGCAATGGTCATCCAGCGGAACACACGGGCAGCTGGCGCCCTTGCCACCG
ATGTAATCGTCGACATTGGGCACGAGGTCTATGAGAGCATGCCGCAAATC
CCCTTCTTGGATCTCAAATTTAAAAAATCGTGTCAACAGAGAGACAAAAC
GCTTATTTTGCTGCTCGACCTCCTGAACGCGGTGTCGAAGATTGTTGCTA
GTGTCGAGCCGGAGCGCTTCCTCTTCCTTTTGCTGGCGCCTAC
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Coding sequence (CDS) from alignment at scaffold_10:361146..363288-

>mRNA_4350 ID=mRNA_4350|Name=jgi.p|Nanoce1779_2|555105|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_10:361146..363288- (Nannochloropsis oceanica)
CCGGACTTTGGACTAACCTGCAGAATCGACGCCTGCAAAATTTGGGCGGC
ACTCCTGCGTCTGCCACTGGAAAGGGCATGCGCTGTCTTCCTGTGCCAAG
CTATGGTCACGCCATGTTTGAGGCATTGGTGGCCGCGGGCGTGTTTGCTT
CGGACACCGCGCCAAACCACATTTTATTGAACGAATATAGTAACGGACAA
GGAATCGCGTTGCACAAAGATGGACCGCTTTACCAGAACCGAGTTGCAAT
TGTGTCGTTGGGCGCACCTGCCCTTATTGAGTTTTGGGATCGGCCTCATT
TAAATGATTTGAACGCGCCCAGGTGTAGTGGTAGCAATTTTCCGTCGCAC
CCGTCCTCTGCTACAGTGCGCTTAGAACATCGGTCTCTGCTCGTATTTGA
GGGAGATGCGTATGAGAAGTACTGGCATGGCATTTTGCGGCGGCATGAGC
TTCCTGCTGAGGAGTCAGGAGATAGAGGAAAGGAGGATCGCCGGATGAGT
TTGACTGTTCGCCGTGTTTTGAATGTCTGCGAAGCGGACAAGGAGATGTT
AGAGACTGCAGAAACCGTACGGGAAGAGAAGCGAGAAAATGCGCGTTTTC
TCATGTCAATATCGGATGACCGATAAATGACAAGTCTGGACTTCAAAGCT
CTGCGCAAGAAAGAGCGCGCAAAACTCCAACGGCAGAAGCAGCAAGAAAA
CCAGTACCAGAACAAGGGTACGCTAAGTCGGATTCATCTCGATGCTCCTT
TGATCCTGGCACATCGCTTCAGTCTGGACCTGATCAAATTCAAGGTCTCA
CCAGGCGCAATAGATGGTATTTACTATGTGCCTGAATGGTTGTCCGAGGA
AGACGCGCGACAGCTACTGGAAGCCATTGATCAGGTTAGTGCCGGACTTT
GGACTAACCTGCAGAATCGACGCCTGCAAAATTTGGGCGGCACTCCTGCG
TCTGCCACTGGAAAGGGCATGCGCTGTCTTCCTGTGCCAAGCTATGGTCA
CGCCATGTTTGAGGCATTGGTGGCCGCGGGCGTGTTTGCTTCGGACACCG
CGCCAAACCACATTTTATTGAACGAATATAGTAACGGACAAGGAATCGCG
TTGCACAAAGATGGACCGCTTTACCAGAACCGAGTTGCAATTGTGTCGTT
GGGCGCACCTGCCCTTATTGAGTTTTGGGATCGGCCTCATTTAAATGATT
TGAACGCGCCCAGGTGTAGTGGTAGCAATTTTCCGTCGCACCCGTCCTCT
GCTACAGTGCGCTTAGAACATCGGTCTCTGCTCGTATTTGAGGGAGATGC
GTATGAGAAGTACTGGCATGGCATTTTGCGGCGGCATGAGCTTCCTGCTG
AGGAGTCAGGAGATAGAGGAAAGGAGGATCGCCGGATGAGTTTGACTGTT
CGCCGTGTTTTGAATGTCTGCGAAGCGGACAAGGAGATGTTAGAGACTGC
AGAAACCGTACGGGAAGAGAAGCGAGAAAATGCGCGTTTTCTCATGTCAA
TATCGGATGACCGATAAATGACAAGTCTGGACTTCAAAGCTCTGCGCAAG
AAAGAGCGCGCAAAACTCCAACGGCAGAAGCAGCAAGAAAACCAGTACCA
GAACAAGGGTACGCTAAGTCGGATTCATCTCGATGCTCCTTTGATCCTGG
CACATCGCTTCAGTCTGGACCTGATCAAATTCAAGGTCTCACCAGGCGCA
ATAGATGGTATTTACTATGTGCCTGAATGGTTGTCCGAGGAAGACGCGCG
ACAGCTACTGGAAGCCATTGATCAGGTTAGTG
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Synonyms
Publications