jgi.p|Nanoce1779_2|589723, mRNA_5610 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589723
Unique Name	mRNA_5610
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1891
Alignment location	scaffold_11:105304..107407 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589809
Track	FilteredModels2
ProteinId	589723

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:105304..107407 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589723	gene_5610	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589723	mRNA_5610-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5610	CDS_5610	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:105304..107407+
coding sequence from alignment at scaffold_11:105304..107407+

mRNA sequence

>mRNA_5610 ID=mRNA_5610|Name=jgi.p|Nanoce1779_2|589723|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp
GCATAGACACCTGCTGTTCTCCTTTCCTCCTCTCTCCCTCCCTCTTCTCT
TCTTCGTCCTCTTTCTCCCACTCCTCCTCCCTCCTCTGCTGTGCTCGCAT
TCACTTCCGCTCCATCCCCTTGCATGGTGGTGGCCCTCTGCCACGCTTCT
TGTCGCCTTTCCTCTGCATGTTCTCCCCACATCTTGCCCATATGTTGTTG
CTCTTCTTCCACCGACAGCGGTGCAAGGGATTGGGATGAAAAGTAGGGTA
ATGGCGCCCTTCGTCCGAAGGAGGGCGAGAGAGACGAAAGAGAGCAGGAA
CGTGGGGCGCGGAAGCTGTCGACGATCTGGTTGCGCTTTGGCTGGGTGGT
GAGGGACCGGCTGTCGGGAGCCAACTCCACCAACAATAGGCTACCGCGCC
AATGTCCTATTTGCACGGTGCGGAAGGAAACGATGCAGAGCCTGATGTCC
CCGCTCCCAGCGAACAGCTTCAGGAAAAACGTGCTCTTCGGTTCTCGGCT
CGGCACGAAAAAGCACATAACACCGTCGTAGAAAGATTCCCTATCCTCAG
GTGCCACCAGCTGGCCCAGCAGCAACATGGGCATCATCCGATGTATCAAG
ACGCGGCTTTCCATCTTTCCCCTTCCATCTAGCAAGTGATCGAAAGCAGT
GTTGGTGACTTGAGCCGCCATATCCCCGTCGACAACTTCCACATACATAG
CCGTGCCTTGGCCATACGCCTGCACTAAGGCGCGGTACTCCTCCGAAGTC
CGCACCTCTTCAGCCAGGGCGGTCGAGGAAACTAGTTCATCTGTTGCCTT
GGCCTTCTGATGAGCCCATGTTGGACCCCACGAAAGCAAGACAACATCTT
TGAGGTCCAGGGGCGTGATCTTCATTATCTTTCTAAGTTGAGCGCCTATG
CCCCAGCTCACGTCGCACCCCGCCACGACGCTCCACCGCTGCCTCGCCCG
CATGGACTGGATGACTCGCGTGCGGTCTACACCACCACTCCCTACTTCTT
GCCATGCCTTCATAAAACTGGCCATATAAGTAACACTTAGATCACGTGGA
TCGCTACGTGCGAACGCCAAGTCGATGAAGGAAATTGGCTGCGATTGCAG
TAATCTTGAGTCCGCCTCCTTCTTCTCCTCGAGCTCTGCCATCGATGAGA
CTGTGGAGTATACAGATTCATTCCGACTACGGCTGCTGCTGCCGGGTATC
ATGGCGCTGATGCTGCTTGAGGTCGTGCGAGCGCTCTTGCCAGTAGAAGT
TCGTGGGAGTCTTGGAGGCTGAGGACAGCAGCGTAAGGAAAGCCGAAAAC
ATCTTTGGCAGGGGTATCCTGAACACGCTGCCCTGACATCACGGCAGCGG
GTGCAGACCCGGCTGACCAGTTTAAGCGCTTCCTTGACCCGCGATCTTTC
CAGGGACAGCTTCCAATGCGACGATGCGGCCATGTAAGGCTTGTCCTCCT
TCTGGCATCGAACGGCGCTCCAGTATTTTTTGTCGGCTCCCGTCCGATGT
CTTGCTATTCCATTCCAAGCGAAAATCGAAGATCCACTCAGCTTACACGT
CTCCGGCCAAGCCTCTCTGCTACAGGATTGGAACAAGGACTTACAGTGGG
AGATTGGTGGCTTTCGACGTTTCACCGCAAAATATATTCAAGCACAATGG
CGATAAGTCACCTCAGTGGAAATTGCGTCAGTGACCCCCTTGTTTTCTCC
CGGTGTCACAAGAGGCAATGAAATATTAATTGCAATCCGTAACCACCATT
ATATGATTATAATATTTCTATAACGTCAGTGGAAACATGTATATGTTGAA
AGGCCTCCTTCATGATTCATTGTATAGCTAATATGGATGTAAGGTACAGA
AAGAGCAGCTGCCGGAGAGCGTGCGTGGATTAGCACAAAAG

protein sequence of jgi.p|Nanoce1779_2|589723

>mRNA_5610-protein ID=mRNA_5610-protein|Name=jgi.p|Nanoce1779_2|589723|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MRRCGHVRLVLLLASNGAPVFFVGSRPMSCYSIPSENRRSTQLTRLRPSL
SATGLEQGLTVGDWWLSTFHRKIYSSTMAISHLSGNCVSDPLVFSRCHKR
Q*

mRNA from alignment at scaffold_11:105304..107407+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5610 ID=mRNA_5610|Name=jgi.p|Nanoce1779_2|589723|organism=Nannochloropsis oceanica|type=mRNA|length=2104bp|location=Sequence derived from alignment at scaffold_11:105304..107407+ (Nannochloropsis oceanica)
GCATAGACACCTGCTGTTCTCCTTTCCTCCTCTCTCCCTCCCTCTTCTCT
TCTTCGTCCTCTTTCTCCCACTCCTCCTCCCTCCTCTGCTGTGCTCGCAT
TCACTTCCGCTCCATCCCCTTGCATGGTGGTGGCCCTCTGCCACGCTTCT
TGTCGCCTTTCCTCTGCATGTTCTCCCCACATCTTGCCCATATGTTGTTG
CTCTTCTTCCACCGACAGCGGTGCAAGGGATTGGGATGAAAAGTAGGGTA
ATGGCGCCCTTCGTCCGAAGGAGGGCGAGAGAGACGAAAGAGAGCAGGAA
CGTGGGGCGCGGAAGCTGTCGACGATCTGGTTGCGCTTTGGCTGGGTGGT
GAGGGACCGGCTGTCGGGAGCCAACTCCACCAACAATAGGCTACCGCGCC
AATGTCCTATTTGCACGGTGCGGAAGGAAACGATGCAGAGCCTGATGTCC
CCGCTCCCAGCGAACAGCTTCAGGAAAAACGTGCTCTTCGGTTCTCGGCT
CGGCACGAAAAAGCACATAACACCGTCGTAGAAAGATTCCCTATCCTCAG
GTGCCACCAGCTGGCCCAGCAGCAACATGGGCATCATCCGATGTATCAAG
ACGCGGCTTTCCATCTTTCCCCTTCCATCTAGCAAGTGATCGAAAGCAGT
GTTGGTGACTTGAGCCGCCATATCCCCGTCGACAACTTCCACATACATAG
CCGTGCCTTGGCCATACGCCTGCACTAAGGCGCGGTACTCCTCCGAAGTC
CGCACCTCTTCAGCCAGGGCGGTCGAGGAAACTAGTTCATCTGTTGCCTT
GGCCTTCTGATGAGCCCATGTTGGACCCCACGAAAGCAAGACAACATCTT
TGAGGTCCAGGGGCGTGATCTTCATTATCTTTCTAAGTTGAGCGCCTATG
CCCCAGCTCACGTCGCACCCCGCCACGACGCTCCACCGCTGCCTCGCCCG
CATGGACTGGATGACTCGCGTGCGGTCTACACCACCACTCCCTACTTCTT
GCCATGCCTTCATAAAACTGGCCATATAAGTAACACTTAGATCACGTGGA
TCGCTACGTGCGAACGCCAAGTCGATGAAGGAAATTGGCTGCGATTGCAG
TAATCTTGAGTCCGCCTCCTTCTTCTCCTCGAGCTCTGCCATCGATGAGA
CTGTGGAGTATACAGATTCATTCCGACTACGGCTGCTGCTGCCGGGTATC
ATGGCGCTGATGCTGCTTGAGGTCGTGCGAGCGCTCTTGCCAGTAGAAGT
TCGTGGGAGTCTTGGAGGCTGAGGACAGCAGCGTAAGGAAAGCCGAAAAC
ATCTTTACGCATGTGGAACAGAAGAATGGAGGTAGAAGATGGAAGAGTCA
ATTGGTGGTTTCTGCCAAGAGCACCTTTATGGTCTCTAAACAGACGTACC
TTTGGCAGGGGTATCCTGAACACGCTGCCTATTTCAGGGTGGAGAGGTAT
ATAAAGGCATTTAATCTCTTTTGGGGGCGTTGCCATTGCATCCCCGTGAT
CATGGCGCCAGACTCAGTGGTGTATGACTGAGAGCAAAACTCACCCTGAC
ATCACGGCAGCGGGTGCAGACCCGGCTGACCAGTTTAAGCGCTTCCTTGA
CCCGCGATCTTTCCAGGGACAGCTTCCAATGCGACGATGCGGCCATGTAA
GGCTTGTCCTCCTTCTGGCATCGAACGGCGCTCCAGTATTTTTTGTCGGC
TCCCGTCCGATGTCTTGCTATTCCATTCCAAGCGAAAATCGAAGATCCAC
TCAGCTTACACGTCTCCGGCCAAGCCTCTCTGCTACAGGATTGGAACAAG
GACTTACAGTGGGAGATTGGTGGCTTTCGACGTTTCACCGCAAAATATAT
TCAAGCACAATGGCGATAAGTCACCTCAGTGGAAATTGCGTCAGTGACCC
CCTTGTTTTCTCCCGGTGTCACAAGAGGCAATGAAATATTAATTGCAATC
CGTAACCACCATTATATGATTATAATATTTCTATAACGTCAGTGGAAACA
TGTATATGTTGAAAGGCCTCCTTCATGATTCATTGTATAGCTAATATGGA
TGTAAGGTACAGAAAGAGCAGCTGCCGGAGAGCGTGCGTGGATTAGCACA
AAAG

Coding sequence (CDS) from alignment at scaffold_11:105304..107407+

>mRNA_5610 ID=mRNA_5610|Name=jgi.p|Nanoce1779_2|589723|organism=Nannochloropsis oceanica|type=CDS|length=306bp|location=Sequence derived from alignment at scaffold_11:105304..107407+ (Nannochloropsis oceanica)
ATGCGACGATGCGGCCATGTAAGGCTTGTCCTCCTTCTGGCATCGAACGG
CGCTCCAGTATTTTTTGTCGGCTCCCGTCCGATGTCTTGCTATTCCATTC
CAAGCGAAAATCGAAGATCCACTCAGCTTACACGTCTCCGGCCAAGCCTC
TCTGCTACAGGATTGGAACAAGGACTTACAGTGGGAGATTGGTGGCTTTC
GACGTTTCACCGCAAAATATATTCAAGCACAATGGCGATAAGTCACCTCA
GTGGAAATTGCGTCAGTGACCCCCTTGTTTTCTCCCGGTGTCACAAGAGG
CAATGA

Synonyms

Publications