jgi.p|Nanoce1779_2|590072, mRNA_5710 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590072
Unique NamemRNA_5710
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length481
Alignment locationscaffold_11:383586..384066 -

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Properties
Property NameValue
TranscriptId590158
TrackFilteredModels2
ProteinId590072
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:383586..384066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590072gene_5710Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590072mRNA_5710-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5710CDS_5710Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5710 ID=mRNA_5710|Name=jgi.p|Nanoce1779_2|590072|organism=Nannochloropsis oceanica|type=mRNA|length=481bp
GCTCCGCCGGGGCATATGAGGTCGAGATCGTCGAGTTTGAGGGGAAGGGG
GGCGGGAGGGATTATGGTGGAAGATCTGGTGGATGCGTATGAGGCTGATG
CGGTTGATGCTCTGCTGGCTAGCAGTGGGGGAGGGATCACAAGGACGACT
CGCTCTCGGAGTGCTGGCAGTGGCAGTGGTGGACGAGGAGGGGGCGGGAG
AAGAGGAGAGGAGGGAGGGGTGGGGACAGGCACAGATGACACGGGAGGGG
AGATGGACGATGATGATGATGATGACGAGGAGGAGGATGATGAGGAGTAT
CAGGACGAGGATGATGATGAGGAGGAAGAAGATGAAGACGGTGATGAGGA
AGGGGACCCAGACATAGAGGCGGCGGAGGCATTATTGGCGAGTGTGAGGG
GGCCGGGGCCGATGGCGATGAGAGCGGAATCGGAGGAGGGGTATGGGGGA
GATGAGATCTCGTCGCAGAAATCGGTCTCGG
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protein sequence of jgi.p|Nanoce1779_2|590072

>mRNA_5710-protein ID=mRNA_5710-protein|Name=jgi.p|Nanoce1779_2|590072|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MRMRLMRLMLCWLAVGEGSQGRLALGVLAVAVVDEEGAGEEERREGWGQA
QMTREGRWTMMMMMTRRRMMRSIRTRMMMRRKKMKTVMRKGTQT*
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mRNA from alignment at scaffold_11:383586..384066-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5710 ID=mRNA_5710|Name=jgi.p|Nanoce1779_2|590072|organism=Nannochloropsis oceanica|type=mRNA|length=481bp|location=Sequence derived from alignment at scaffold_11:383586..384066- (Nannochloropsis oceanica)
GCTCCGCCGGGGCATATGAGGTCGAGATCGTCGAGTTTGAGGGGAAGGGG
GGCGGGAGGGATTATGGTGGAAGATCTGGTGGATGCGTATGAGGCTGATG
CGGTTGATGCTCTGCTGGCTAGCAGTGGGGGAGGGATCACAAGGACGACT
CGCTCTCGGAGTGCTGGCAGTGGCAGTGGTGGACGAGGAGGGGGCGGGAG
AAGAGGAGAGGAGGGAGGGGTGGGGACAGGCACAGATGACACGGGAGGGG
AGATGGACGATGATGATGATGATGACGAGGAGGAGGATGATGAGGAGTAT
CAGGACGAGGATGATGATGAGGAGGAAGAAGATGAAGACGGTGATGAGGA
AGGGGACCCAGACATAGAGGCGGCGGAGGCATTATTGGCGAGTGTGAGGG
GGCCGGGGCCGATGGCGATGAGAGCGGAATCGGAGGAGGGGTATGGGGGA
GATGAGATCTCGTCGCAGAAATCGGTCTCGG
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Coding sequence (CDS) from alignment at scaffold_11:383586..384066-

>mRNA_5710 ID=mRNA_5710|Name=jgi.p|Nanoce1779_2|590072|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_11:383586..384066- (Nannochloropsis oceanica)
ATGCGTATGAGGCTGATGCGGTTGATGCTCTGCTGGCTAGCAGTGGGGGA
GGGATCACAAGGACGACTCGCTCTCGGAGTGCTGGCAGTGGCAGTGGTGG
ACGAGGAGGGGGCGGGAGAAGAGGAGAGGAGGGAGGGGTGGGGACAGGCA
CAGATGACACGGGAGGGGAGATGGACGATGATGATGATGATGACGAGGAG
GAGGATGATGAGGAGTATCAGGACGAGGATGATGATGAGGAGGAAGAAGA
TGAAGACGGTGATGAGGAAGGGGACCCAGACATAG
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Synonyms
Publications