jgi.p|Nanoce1779_2|590546, mRNA_5850 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590546
Unique Name	mRNA_5850
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1878
Alignment location	scaffold_11:728184..730061 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590632
Track	FilteredModels2
ProteinId	590546

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:728184..730061 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590546	gene_5850	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590546	mRNA_5850-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5850	CDS_5850	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:728184..730061+
coding sequence from alignment at scaffold_11:728184..730061+

mRNA sequence

>mRNA_5850 ID=mRNA_5850|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
CCTCCTCGGCCCCATACCCCCCCGGCGATGCCGGAGGGACAACCCATCGG
CTCCCTCCCTCTCTTCCTCCCTCCCCTCCCCTCTGCAAAAATGGATGGTG
CTTTAACAGATACCTGGCCGTCGGCCTCTTCTTCGGATCTTTATTCAAAC
ACTGCCGCACAAAATCTCGAAAAGAAGGGGAGAACGAGGGCGGGAGGGAA
GGAGAGTCCATCTCCCTCAACGCCGAGACCAGCCCCCAATACCCTCCTGA
GTGATCGTAAGGAAACCGGCCCATGGCGCATGTGACAAGCGTCAATCCCA
CGCCCCAGACGTCGGCGGAATAGCTGTACTCTTCTCCGCAGATGCGTTCT
GGCGACATGTACGTAAAAGTCCCCACAAATGTGTCCGCCTGGGAAATAGA
GGAATCCAGGTGGCGGACCAAGCCAAAGTCGCTAATTTTGACCTGCCCCT
TGTGATTGAGCAGGAGGTTGGCCGGCTTGATGTCACGATGGATCTGTCGC
CGTTCATGCAGGAAGGCCAGCCCCTCCAGGACCTCGCGGGCGATATGGGA
CAGGACGGCTTCGGCAGCACAGCCCCCGCCATCGACTATTTCTTGCAGTG
AGCCTCCATCCATGTATTCCTGGACGATGCTCACGGTCCCTTCAGTAGGG
CTGACGTACGCGTCATAAAACGATACCAATTGGGGACATCCAGCTGTCGC
CGCCGCCGCTACTGCTGCTGCTGCTGTTGCTTGTGTAGGTGGAGTCTTGC
CAACGGCAGCCGCAGCCGCGGCGGCCGCAGCAGCCGCCTCTTTACTTAAC
CCTCCTGCGAACAAATCCTCATGCTCTACTGCGGTTTTCCTCTGGGCTTT
ACCCTTCCCACTGCCTTTCCGACAATTTTTTGACGGATACCCTGTTCCTG
CTGGTGCTGCAGCGGCAGCAGCACCAGCAGGAGGAGTAGGAGTAGGCCGG
CCTAACGGAGCTAAATTTGCGTATAGAGCTCTCAGTTCTCTCACCATCTG
ATGCCGCCTTCCTTCTTCAAACACCAGAATGGTTTTCACAGCCACCAAGC
GCAGGCTGGGAACGTGGATACCTTGCCAAACAGTGCCACCTGTCCCTCGC
CCTAGCACGGCCAAGGGTGCCAACGCGTCTTGTAAACTTTGAGTGTCATT
GCTCACGCTAACGCTGGGCATGTTGCGACCACTGTCATTTGTGGAAAATG
GGGACATGGGCTCACCAGAACGGCCAGGGCCATTACTCAAGATGAAGGAG
GGGGAGGCGGCGCCATTACTGCTCTCTCCCCAGGAGCCGGAGGAGGGCGT
GGTGGAAAGCTGCCCGCCAATGCTGCTGTTGTGTTTGTAGTATATTGGCT
GGCTTGTCTGGGTCAGTCCAGACTTGCGGATCTCGAAGCCAGCGATATGG
ATGGAGCCGCTCTTGGAAATACTAAGCGTCTTGGAGTCGCTCTTGTTGCT
GGTGGCGTGTCTGCGCTTCGAGGACGAGGACATTCCGCCCGACGACCCCC
CCCCTGACGTGGCCCCGCCGTTGCTGCCATCGTGTTGCCGGTTACCGCCA
CATCCGCTATCGTCGCTCCCGCACCCACTGCTGCTACTCCCTGTGGCGAT
CTCCAGGCGTAAGGGACTAAAGGCCGTGCCCGTCCCGATGGTCAATGGGG
GTGGCGTCGGGTCGACATCAACCTCTAGCGTAAGCTTCTGTGCAAAGTCC
TCCTGGATCCTGGGGAGCGGCGGGAGGGCCATTCCAACCTACCCAGGACA
GTGGCACTTTTCAGTGCGCGCTTGTAATGGTTTGAATTTTGTGAGTGGTC
AAAAAGGGAAGTGAAGCGGACGAACAAACAGACAGGAGATGTGCGGGAGA
AGAAGCGAAGCTGAAAGAAAGCGCGGCT

protein sequence of jgi.p|Nanoce1779_2|590546

>mRNA_5850-protein ID=mRNA_5850-protein|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MEPLLEILSVLESLLLLVACLRFEDEDIPPDDPPPDVAPPLLPSCCRLPP
HPLSSLPHPLLLLPVAISRRKGLKAVPVPMVNGGGVGSTSTSSVSFCAKS
SWILGSGGRAIPTYPGQWHFSVRACNGLNFVSGQKGK*

mRNA from alignment at scaffold_11:728184..730061+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5850 ID=mRNA_5850|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp|location=Sequence derived from alignment at scaffold_11:728184..730061+ (Nannochloropsis oceanica)
CCTCCTCGGCCCCATACCCCCCCGGCGATGCCGGAGGGACAACCCATCGG
CTCCCTCCCTCTCTTCCTCCCTCCCCTCCCCTCTGCAAAAATGGATGGTG
CTTTAACAGATACCTGGCCGTCGGCCTCTTCTTCGGATCTTTATTCAAAC
ACTGCCGCACAAAATCTCGAAAAGAAGGGGAGAACGAGGGCGGGAGGGAA
GGAGAGTCCATCTCCCTCAACGCCGAGACCAGCCCCCAATACCCTCCTGA
GTGATCGTAAGGAAACCGGCCCATGGCGCATGTGACAAGCGTCAATCCCA
CGCCCCAGACGTCGGCGGAATAGCTGTACTCTTCTCCGCAGATGCGTTCT
GGCGACATGTACGTAAAAGTCCCCACAAATGTGTCCGCCTGGGAAATAGA
GGAATCCAGGTGGCGGACCAAGCCAAAGTCGCTAATTTTGACCTGCCCCT
TGTGATTGAGCAGGAGGTTGGCCGGCTTGATGTCACGATGGATCTGTCGC
CGTTCATGCAGGAAGGCCAGCCCCTCCAGGACCTCGCGGGCGATATGGGA
CAGGACGGCTTCGGCAGCACAGCCCCCGCCATCGACTATTTCTTGCAGTG
AGCCTCCATCCATGTATTCCTGGACGATGCTCACGGTCCCTTCAGTAGGG
CTGACGTACGCGTCATAAAACGATACCAATTGGGGACATCCAGCTGTCGC
CGCCGCCGCTACTGCTGCTGCTGCTGTTGCTTGTGTAGGTGGAGTCTTGC
CAACGGCAGCCGCAGCCGCGGCGGCCGCAGCAGCCGCCTCTTTACTTAAC
CCTCCTGCGAACAAATCCTCATGCTCTACTGCGGTTTTCCTCTGGGCTTT
ACCCTTCCCACTGCCTTTCCGACAATTTTTTGACGGATACCCTGTTCCTG
CTGGTGCTGCAGCGGCAGCAGCACCAGCAGGAGGAGTAGGAGTAGGCCGG
CCTAACGGAGCTAAATTTGCGTATAGAGCTCTCAGTTCTCTCACCATCTG
ATGCCGCCTTCCTTCTTCAAACACCAGAATGGTTTTCACAGCCACCAAGC
GCAGGCTGGGAACGTGGATACCTTGCCAAACAGTGCCACCTGTCCCTCGC
CCTAGCACGGCCAAGGGTGCCAACGCGTCTTGTAAACTTTGAGTGTCATT
GCTCACGCTAACGCTGGGCATGTTGCGACCACTGTCATTTGTGGAAAATG
GGGACATGGGCTCACCAGAACGGCCAGGGCCATTACTCAAGATGAAGGAG
GGGGAGGCGGCGCCATTACTGCTCTCTCCCCAGGAGCCGGAGGAGGGCGT
GGTGGAAAGCTGCCCGCCAATGCTGCTGTTGTGTTTGTAGTATATTGGCT
GGCTTGTCTGGGTCAGTCCAGACTTGCGGATCTCGAAGCCAGCGATATGG
ATGGAGCCGCTCTTGGAAATACTAAGCGTCTTGGAGTCGCTCTTGTTGCT
GGTGGCGTGTCTGCGCTTCGAGGACGAGGACATTCCGCCCGACGACCCCC
CCCCTGACGTGGCCCCGCCGTTGCTGCCATCGTGTTGCCGGTTACCGCCA
CATCCGCTATCGTCGCTCCCGCACCCACTGCTGCTACTCCCTGTGGCGAT
CTCCAGGCGTAAGGGACTAAAGGCCGTGCCCGTCCCGATGGTCAATGGGG
GTGGCGTCGGGTCGACATCAACCTCTAGCGTAAGCTTCTGTGCAAAGTCC
TCCTGGATCCTGGGGAGCGGCGGGAGGGCCATTCCAACCTACCCAGGACA
GTGGCACTTTTCAGTGCGCGCTTGTAATGGTTTGAATTTTGTGAGTGGTC
AAAAAGGGAAGTGAAGCGGACGAACAAACAGACAGGAGATGTGCGGGAGA
AGAAGCGAAGCTGAAAGAAAGCGCGGCT

Coding sequence (CDS) from alignment at scaffold_11:728184..730061+

>mRNA_5850 ID=mRNA_5850|Name=jgi.p|Nanoce1779_2|590546|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_11:728184..730061+ (Nannochloropsis oceanica)
ATGGAGCCGCTCTTGGAAATACTAAGCGTCTTGGAGTCGCTCTTGTTGCT
GGTGGCGTGTCTGCGCTTCGAGGACGAGGACATTCCGCCCGACGACCCCC
CCCCTGACGTGGCCCCGCCGTTGCTGCCATCGTGTTGCCGGTTACCGCCA
CATCCGCTATCGTCGCTCCCGCACCCACTGCTGCTACTCCCTGTGGCGAT
CTCCAGGCGTAAGGGACTAAAGGCCGTGCCCGTCCCGATGGTCAATGGGG
GTGGCGTCGGGTCGACATCAACCTCTAGCGTAAGCTTCTGTGCAAAGTCC
TCCTGGATCCTGGGGAGCGGCGGGAGGGCCATTCCAACCTACCCAGGACA
GTGGCACTTTTCAGTGCGCGCTTGTAATGGTTTGAATTTTGTGAGTGGTC
AAAAAGGGAAGTGA

Synonyms

Publications