jgi.p|Nanoce1779_2|566323, mRNA_5058 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566323
Unique NamemRNA_5058
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length687
Alignment locationscaffold_12:350178..350864 -

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Properties
Property NameValue
TranscriptId566409
TrackFilteredModels2
ProteinId566323
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:350178..350864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566323gene_5058Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5058CDS_5058Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566323mRNA_5058-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5058 ID=mRNA_5058|Name=jgi.p|Nanoce1779_2|566323|organism=Nannochloropsis oceanica|type=mRNA|length=687bp
ATGGCAGCAACAGCGGCGGAAGAGGAAGAAAAAGAGGAGGAAGCACATCG
ACTCATGTATCGGACAAAACAGCAGGGGATTACGATAGACGCCCAATCTT
TTTTGGCTGATATTATTTCACATTGCACTCAGACCTTGGCGCAAAGCTCG
TCGTTTTTTAAAGATGCCTTTTGGTACCGCGACAGCCAGGCCATCCAAGA
GGTGTTCTTCGCACAACCTCGGGCGTCGGCTGTGAGGGCTTTGAATGACA
GTCAGAGTTACTTGAGATGTGCATGCTGTCGTCCCGGGGAGCTTGATCCC
TCCATACCGGATATATGCATTGTATATGGTCTGTATGAAGCGCACCAAGG
ACGGACGATTAATTTACGAGCGTGGTTCGCGTCGTTTGTGGATGTCATTT
GTGGGCAGGAAGAGAAGGAGGAGGGGGAAGAAGAGGAGGAGAGGGGGAGA
GGCATCCTGCGGGGGCGGAAAAAGTTTAAAAAGGAGAGAGGGATGGTGAT
GGGGCGGAATTTGAAGGCGCTATGGGCGAGATTCTTGCACGCCGTGGACG
AGTTGGAACATTTGGGGTTCACGCGGCCGTATGGCAAGAAGACGGGGGAC
CGATCCAAACTGATTTTTGCCTACACTTTGTTGAGCCGCAAGCAAGGGGA
GCAAGAGCAGCAGGAGGAGTTGTTGCAAGAAGTTTAG
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protein sequence of jgi.p|Nanoce1779_2|566323

>mRNA_5058-protein ID=mRNA_5058-protein|Name=jgi.p|Nanoce1779_2|566323|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MAATAAEEEEKEEEAHRLMYRTKQQGITIDAQSFLADIISHCTQTLAQSS
SFFKDAFWYRDSQAIQEVFFAQPRASAVRALNDSQSYLRCACCRPGELDP
SIPDICIVYGLYEAHQGRTINLRAWFASFVDVICGQEEKEEGEEEEERGR
GILRGRKKFKKERGMVMGRNLKALWARFLHAVDELEHLGFTRPYGKKTGD
RSKLIFAYTLLSRKQGEQEQQEELLQEV*
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mRNA from alignment at scaffold_12:350178..350864-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5058 ID=mRNA_5058|Name=jgi.p|Nanoce1779_2|566323|organism=Nannochloropsis oceanica|type=mRNA|length=687bp|location=Sequence derived from alignment at scaffold_12:350178..350864- (Nannochloropsis oceanica)
ATGGCAGCAACAGCGGCGGAAGAGGAAGAAAAAGAGGAGGAAGCACATCG
ACTCATGTATCGGACAAAACAGCAGGGGATTACGATAGACGCCCAATCTT
TTTTGGCTGATATTATTTCACATTGCACTCAGACCTTGGCGCAAAGCTCG
TCGTTTTTTAAAGATGCCTTTTGGTACCGCGACAGCCAGGCCATCCAAGA
GGTGTTCTTCGCACAACCTCGGGCGTCGGCTGTGAGGGCTTTGAATGACA
GTCAGAGTTACTTGAGATGTGCATGCTGTCGTCCCGGGGAGCTTGATCCC
TCCATACCGGATATATGCATTGTATATGGTCTGTATGAAGCGCACCAAGG
ACGGACGATTAATTTACGAGCGTGGTTCGCGTCGTTTGTGGATGTCATTT
GTGGGCAGGAAGAGAAGGAGGAGGGGGAAGAAGAGGAGGAGAGGGGGAGA
GGCATCCTGCGGGGGCGGAAAAAGTTTAAAAAGGAGAGAGGGATGGTGAT
GGGGCGGAATTTGAAGGCGCTATGGGCGAGATTCTTGCACGCCGTGGACG
AGTTGGAACATTTGGGGTTCACGCGGCCGTATGGCAAGAAGACGGGGGAC
CGATCCAAACTGATTTTTGCCTACACTTTGTTGAGCCGCAAGCAAGGGGA
GCAAGAGCAGCAGGAGGAGTTGTTGCAAGAAGTTTAG
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Coding sequence (CDS) from alignment at scaffold_12:350178..350864-

>mRNA_5058 ID=mRNA_5058|Name=jgi.p|Nanoce1779_2|566323|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_12:350178..350864- (Nannochloropsis oceanica)
ATGGCAGCAACAGCGGCGGAAGAGGAAGAAAAAGAGGAGGAAGCACATCG
ACTCATGTATCGGACAAAACAGCAGGGGATTACGATAGACGCCCAATCTT
TTTTGGCTGATATTATTTCACATTGCACTCAGACCTTGGCGCAAAGCTCG
TCGTTTTTTAAAGATGCCTTTTGGTACCGCGACAGCCAGGCCATCCAAGA
GGTGTTCTTCGCACAACCTCGGGCGTCGGCTGTGAGGGCTTTGAATGACA
GTCAGAGTTACTTGAGATGTGCATGCTGTCGTCCCGGGGAGCTTGATCCC
TCCATACCGGATATATGCATTGTATATGGTCTGTATGAAGCGCACCAAGG
ACGGACGATTAATTTACGAGCGTGGTTCGCGTCGTTTGTGGATGTCATTT
GTGGGCAGGAAGAGAAGGAGGAGGGGGAAGAAGAGGAGGAGAGGGGGAGA
GGCATCCTGCGGGGGCGGAAAAAGTTTAAAAAGGAGAGAGGGATGGTGAT
GGGGCGGAATTTGAAGGCGCTATGGGCGAGATTCTTGCACGCCGTGGACG
AGTTGGAACATTTGGGGTTCACGCGGCCGTATGGCAAGAAGACGGGGGAC
CGATCCAAACTGATTTTTGCCTACACTTTGTTGAGCCGCAAGCAAGGGGA
GCAAGAGCAGCAGGAGGAGTTGTTGCAAGAAGTTTAG
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Synonyms
Publications