jgi.p|Nanoce1779_2|591649, mRNA_5179 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|591649
Unique Name	mRNA_5179
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1053
Alignment location	scaffold_12:663533..664585 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591735
Track	FilteredModels2
ProteinId	591649

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:663533..664585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591649	gene_5179	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|591649	mRNA_5179-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5179	CDS_5179	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:663533..664585+
coding sequence from alignment at scaffold_12:663533..664585+

mRNA sequence

>mRNA_5179 ID=mRNA_5179|Name=jgi.p|Nanoce1779_2|591649|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
CTTGGAGTGCTACGAAGAGGCCGGTACGTGCTGATGACTTAGGCCAGGCC
TGTCCAAACGGCCTTTGGTTCAATATGACCACCCAAGCAGTGTTGGACAT
TTTGAGCGTGTCTAGCCTATACCCCTTCCTACTCAGCTTGCTATTTTTTC
CTGGAGGAACGATCCCCTTCAATGCACATCCCGCTCATGAATACAACTTA
TTCCTTTTTCACCACCCCGCGCGGAACACCCCGCCACCTCCCGCGGGCAT
TTGCAAGCTGGTCGAACACACACGATCACAACCCCTCTCTGTATTACACA
AAATTTTCCCCATTTTTATTCCTCCCTCTCTCTTCCTCTCCACATGTCCC
TCCTCACCACGAATCTAGCCCAAGACCAGTCTTTCTATCTCGACCCCTCA
TCCCTTTCTCTCTCTACATCCCCCCCAGTCCGCATGGACCCCTCTGAACC
CGTCTACTATGCCAACCGCTCGACCTGCCTTTTCGAACTCGGGAAGTACA
CCGCATCCTGCGAAGACTCTAAGCAAGCCAGCCTTCTTTACCGCGACAAG
CAACAAATCGGCATGATTTCCCGCGCGGAGGCGAATACCGCAATCGGCCG
CCTCCTGCGCCAATCAGCCCGGGCTTTCCTCTGCATTAACAGCACCGAGT
CCCTGCAAGCCGCGAAAGCCCTCCTGGCAAGGACCATCGAACTTCACCCC
GATCCGGACGCCGAGCTTCTCTCCATGCACGCCGGGGCCTGCCAAGCAGT
CGATGAAGCCTTCAGCCTCAACGCAGGGGAGGGGTCGGGTCCCGGGTATC
ATATGACAAAATCTTCCTCGAGTGGAAGTGGGGTGAGTCATCTGGGGATA
GGTGGAGGGTCGTGTGATTACTTGCCGAGGTACCGTTCCCCAGTGGTCAA
TGGGTCGACCCCCTACTCGTGTATAGGGTGGGAGGTGGCATTATCAGGCC
TGGCTGGGAGGGTACCCAGTCCTGCGGATACCGAGAGTCCGTTTTCGACG
CATGGGGGAACGTTTGGAGATGATGATAGTGACAGTGACGTGGAGGAGGA
GGG

protein sequence of jgi.p|Nanoce1779_2|591649

>mRNA_5179-protein ID=mRNA_5179-protein|Name=jgi.p|Nanoce1779_2|591649|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MTTQAVLDILSVSSLYPFLLSLLFFPGGTIPFNAHPAHEYNLFLFHHPAR
NTPPPPAGICKLVEHTRSQPLSVLHKIFPIFIPPSLFLSTCPSSPRI*

mRNA from alignment at scaffold_12:663533..664585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5179 ID=mRNA_5179|Name=jgi.p|Nanoce1779_2|591649|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at scaffold_12:663533..664585+ (Nannochloropsis oceanica)
CTTGGAGTGCTACGAAGAGGCCGGTACGTGCTGATGACTTAGGCCAGGCC
TGTCCAAACGGCCTTTGGTTCAATATGACCACCCAAGCAGTGTTGGACAT
TTTGAGCGTGTCTAGCCTATACCCCTTCCTACTCAGCTTGCTATTTTTTC
CTGGAGGAACGATCCCCTTCAATGCACATCCCGCTCATGAATACAACTTA
TTCCTTTTTCACCACCCCGCGCGGAACACCCCGCCACCTCCCGCGGGCAT
TTGCAAGCTGGTCGAACACACACGATCACAACCCCTCTCTGTATTACACA
AAATTTTCCCCATTTTTATTCCTCCCTCTCTCTTCCTCTCCACATGTCCC
TCCTCACCACGAATCTAGCCCAAGACCAGTCTTTCTATCTCGACCCCTCA
TCCCTTTCTCTCTCTACATCCCCCCCAGTCCGCATGGACCCCTCTGAACC
CGTCTACTATGCCAACCGCTCGACCTGCCTTTTCGAACTCGGGAAGTACA
CCGCATCCTGCGAAGACTCTAAGCAAGCCAGCCTTCTTTACCGCGACAAG
CAACAAATCGGCATGATTTCCCGCGCGGAGGCGAATACCGCAATCGGCCG
CCTCCTGCGCCAATCAGCCCGGGCTTTCCTCTGCATTAACAGCACCGAGT
CCCTGCAAGCCGCGAAAGCCCTCCTGGCAAGGACCATCGAACTTCACCCC
GATCCGGACGCCGAGCTTCTCTCCATGCACGCCGGGGCCTGCCAAGCAGT
CGATGAAGCCTTCAGCCTCAACGCAGGGGAGGGGTCGGGTCCCGGGTATC
ATATGACAAAATCTTCCTCGAGTGGAAGTGGGGTGAGTCATCTGGGGATA
GGTGGAGGGTCGTGTGATTACTTGCCGAGGTACCGTTCCCCAGTGGTCAA
TGGGTCGACCCCCTACTCGTGTATAGGGTGGGAGGTGGCATTATCAGGCC
TGGCTGGGAGGGTACCCAGTCCTGCGGATACCGAGAGTCCGTTTTCGACG
CATGGGGGAACGTTTGGAGATGATGATAGTGACAGTGACGTGGAGGAGGA
GGG

Coding sequence (CDS) from alignment at scaffold_12:663533..664585+

>mRNA_5179 ID=mRNA_5179|Name=jgi.p|Nanoce1779_2|591649|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_12:663533..664585+ (Nannochloropsis oceanica)
ATGACCACCCAAGCAGTGTTGGACATTTTGAGCGTGTCTAGCCTATACCC
CTTCCTACTCAGCTTGCTATTTTTTCCTGGAGGAACGATCCCCTTCAATG
CACATCCCGCTCATGAATACAACTTATTCCTTTTTCACCACCCCGCGCGG
AACACCCCGCCACCTCCCGCGGGCATTTGCAAGCTGGTCGAACACACACG
ATCACAACCCCTCTCTGTATTACACAAAATTTTCCCCATTTTTATTCCTC
CCTCTCTCTTCCTCTCCACATGTCCCTCCTCACCACGAATCTAG

Synonyms

Publications