jgi.p|Nanoce1779_2|592101, mRNA_5314 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592101
Unique NamemRNA_5314
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1130
Alignment locationscaffold_13:146130..147356 +

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Properties
Property NameValue
TranscriptId592187
TrackFilteredModels2
ProteinId592101
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:146130..147356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592101gene_5314Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592101mRNA_5314-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5314CDS_5314Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5314 ID=mRNA_5314|Name=jgi.p|Nanoce1779_2|592101|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp
AGTTATGGCATCTCGTGGCCCAAGCACTAACAGTACCCGGACAAGCTGTC
GACGACCGCTCCTCCGCACCCGGCCGCTCCCGCCATCCCCTCCTCCGTCT
CCTCACCGTGGCACTATCGTGAGCACCACCAATCATTTCCCGAGTGCAAC
CGTATCCGTCACGGAGCTGCAGGAGGTTTTGGGTGACTATCAACATATTA
AGCAACAGTTAGCGCGTTTGCGGAAGCAGGTGTTCATGACGGAGCTTAAG
GGCTTGGCAGAGATCTCGGCTTTGGTCTCCGAGAATGGGGAGGAGGGTTT
TAAAAGTAAACGACGGCCGCAACATGGCGTAAATCTGGTAGCGAAAACAC
AAATGAAAGTAGGAAAGGAGGCTGAAGAAGCCATGGTGTGGATGCTCAAG
GCAGAGGTGGAAGAGATGAATCAGTCGCTAAAACAACGGGAGGAGGAACA
TGAGGAAGAAAAGACACATTTACAAGCGTATTGCATTGAGCTGGAGGATC
ATGTAGCCACGGCGATGGAGCAGGCAGAGCTCGCACAGGCACAAGCACAG
GCAGCGCAAGAAGAGCTGGAACACGATCGCGAAAACTCCCGTCAAGAAAT
TTTCCGCCTTCAAGAACAGATCGAGGAACTAGCAGAAGCCCTTAAAACCC
ACGAACGGCTTACGATGGCACACAATACAGAGATAACGAAGTTGCGAAAA
GGGCTACTCGAGGAGGAAGCTGAGAAAGAGGAATACAAGAAACGGCTGGA
AAATACCAAGGGTCTCGATGAAGAGATGGGAAGGCTACGAAAAGCGTTGA
TACAAACAGAAGAAAGGGTGGCGGGGATGGAGGAAGGGGCAAAGCATGCG
AAGGAGAAGGAGATGGAGAGGAGGAGGGTTATCAGGGAGCAACGGAAAGT
GATAGAGAATGAATTGATGCTAGAGATGGAGAGGGTGGAGCAGGATATGG
CAGCGGCAGCAGTCAGAAATGGAGGAGGATCAGAAGCAGCAACAGGCATA
AGTATTTGAGAGATGTGCGGGATATGTCAGATATGTCAGTGGGAAGGAGG
AAAAGAATGAGCGATAGAACGAATGATACTCTGACTGTGACTTAAACAAA
CAAAACAAATCGAGTATATCGTCGAGAAGA
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protein sequence of jgi.p|Nanoce1779_2|592101

>mRNA_5314-protein ID=mRNA_5314-protein|Name=jgi.p|Nanoce1779_2|592101|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MASRGPSTNSTRTSCRRPLLRTRPLPPSPPPSPHRGTIVSTTNHFPSATV
SVTELQEVLGDYQHIKQQLARLRKQVFMTELKGLAEISALVSENGEEGFK
SKRRPQHGVNLVAKTQMKVGKEAEEAMVWMLKAEVEEMNQSLKQREEEHE
EEKTHLQAYCIELEDHVATAMEQAELAQAQAQAAQEELEHDRENSRQEIF
RLQEQIEELAEALKTHERLTMAHNTEITKLRKGLLEEEAEKEEYKKRLEN
TKGLDEEMGRLRKALIQTEERVAGMEEGAKHAKEKEMERRRVIREQRKVI
ENELMLEMERVEQDMAAAAVRNGGGSEAATGISI*
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mRNA from alignment at scaffold_13:146130..147356+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5314 ID=mRNA_5314|Name=jgi.p|Nanoce1779_2|592101|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp|location=Sequence derived from alignment at scaffold_13:146130..147356+ (Nannochloropsis oceanica)
AGTTATGGCATCTCGTGGCCCAAGCACTAACAGTACCCGGACAAGCTGTC
GACGACCGCTCCTCCGCACCCGGCCGCTCCCGCCATCCCCTCCTCCGTCT
CCTCACCGTGGCACTATCGTGAGCACCACCAATCATTTCCCGAGTGCAAC
CGTATCCGTCACGGAGCTGCAGGAGGTTTTGGGTGACTATCAACATATTA
AGCAACAGTTAGCGCGTTTGCGGAAGCAGGTGTTCATGACGGAGCTTAAG
GGCTTGGCAGAGATCTCGGCTTTGGTCTCCGAGAATGGGGAGGAGGGTTT
TAAAAGTAAACGACGGCCGCAACATGGCGTAAATCTGGTAGCGAAAACAC
AAATGAAAGTAGGAAAGGAGGCTGAAGAAGCCATGGTGTGGATGCTCAAG
GCAGAGGTGGAAGAGATGAATCAGTCGCTAAAACAACGGGAGGAGGAACA
TGAGGAAGAAAAGACACATTTACAAGCGTATTGCATTGAGCTGGAGGATC
ATGTAGCCACGGCGATGGAGCAGGCAGAGCTCGCACAGGTAGTGTTTTTA
ATTGCGCTATCATTTTTGCTATGGCTAAATACACGCAGTCACTTCCTCTC
CCCAACTCTCCTCTCATCCCTCCCCCTTGTTGTAGGCACAAGCACAGGCA
GCGCAAGAAGAGCTGGAACACGATCGCGAAAACTCCCGTCAAGAAATTTT
CCGCCTTCAAGAACAGATCGAGGAACTAGCAGAAGCCCTTAAAACCCACG
AACGGCTTACGATGGCACACAATACAGAGATAACGAAGTTGCGAAAAGGG
CTACTCGAGGAGGAAGCTGAGAAAGAGGAATACAAGAAACGGCTGGAAAA
TACCAAGGGTCTCGATGAAGAGATGGGAAGGCTACGAAAAGCGTTGATAC
AAACAGAAGAAAGGGTGGCGGGGATGGAGGAAGGGGCAAAGCATGCGAAG
GAGAAGGAGATGGAGAGGAGGAGGGTTATCAGGGAGCAACGGAAAGTGAT
AGAGAATGAATTGATGCTAGAGATGGAGAGGGTGGAGCAGGATATGGCAG
CGGCAGCAGTCAGAAATGGAGGAGGATCAGAAGCAGCAACAGGCATAAGT
ATTTGAGAGATGTGCGGGATATGTCAGATATGTCAGTGGGAAGGAGGAAA
AGAATGAGCGATAGAACGAATGATACTCTGACTGTGACTTAAACAAACAA
AACAAATCGAGTATATCGTCGAGAAGA
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Coding sequence (CDS) from alignment at scaffold_13:146130..147356+

>mRNA_5314 ID=mRNA_5314|Name=jgi.p|Nanoce1779_2|592101|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_13:146130..147356+ (Nannochloropsis oceanica)
ATGGCATCTCGTGGCCCAAGCACTAACAGTACCCGGACAAGCTGTCGACG
ACCGCTCCTCCGCACCCGGCCGCTCCCGCCATCCCCTCCTCCGTCTCCTC
ACCGTGGCACTATCGTGAGCACCACCAATCATTTCCCGAGTGCAACCGTA
TCCGTCACGGAGCTGCAGGAGGTTTTGGGTGACTATCAACATATTAAGCA
ACAGTTAGCGCGTTTGCGGAAGCAGGTGTTCATGACGGAGCTTAAGGGCT
TGGCAGAGATCTCGGCTTTGGTCTCCGAGAATGGGGAGGAGGGTTTTAAA
AGTAAACGACGGCCGCAACATGGCGTAAATCTGGTAGCGAAAACACAAAT
GAAAGTAGGAAAGGAGGCTGAAGAAGCCATGGTGTGGATGCTCAAGGCAG
AGGTGGAAGAGATGAATCAGTCGCTAAAACAACGGGAGGAGGAACATGAG
GAAGAAAAGACACATTTACAAGCGTATTGCATTGAGCTGGAGGATCATGT
AGCCACGGCGATGGAGCAGGCAGAGCTCGCACAGGCACAAGCACAGGCAG
CGCAAGAAGAGCTGGAACACGATCGCGAAAACTCCCGTCAAGAAATTTTC
CGCCTTCAAGAACAGATCGAGGAACTAGCAGAAGCCCTTAAAACCCACGA
ACGGCTTACGATGGCACACAATACAGAGATAACGAAGTTGCGAAAAGGGC
TACTCGAGGAGGAAGCTGAGAAAGAGGAATACAAGAAACGGCTGGAAAAT
ACCAAGGGTCTCGATGAAGAGATGGGAAGGCTACGAAAAGCGTTGATACA
AACAGAAGAAAGGGTGGCGGGGATGGAGGAAGGGGCAAAGCATGCGAAGG
AGAAGGAGATGGAGAGGAGGAGGGTTATCAGGGAGCAACGGAAAGTGATA
GAGAATGAATTGATGCTAGAGATGGAGAGGGTGGAGCAGGATATGGCAGC
GGCAGCAGTCAGAAATGGAGGAGGATCAGAAGCAGCAACAGGCATAAGTA
TTTGAATGGCATCTCGTGGCCCAAGCACTAACAGTACCCGGACAAGCTGT
CGACGACCGCTCCTCCGCACCCGGCCGCTCCCGCCATCCCCTCCTCCGTC
TCCTCACCGTGGCACTATCGTGAGCACCACCAATCATTTCCCGAGTGCAA
CCGTATCCGTCACGGAGCTGCAGGAGGTTTTGGGTGACTATCAACATATT
AAGCAACAGTTAGCGCGTTTGCGGAAGCAGGTGTTCATGACGGAGCTTAA
GGGCTTGGCAGAGATCTCGGCTTTGGTCTCCGAGAATGGGGAGGAGGGTT
TTAAAAGTAAACGACGGCCGCAACATGGCGTAAATCTGGTAGCGAAAACA
CAAATGAAAGTAGGAAAGGAGGCTGAAGAAGCCATGGTGTGGATGCTCAA
GGCAGAGGTGGAAGAGATGAATCAGTCGCTAAAACAACGGGAGGAGGAAC
ATGAGGAAGAAAAGACACATTTACAAGCGTATTGCATTGAGCTGGAGGAT
CATGTAGCCACGGCGATGGAGCAGGCAGAGCTCGCACAGGCACAAGCACA
GGCAGCGCAAGAAGAGCTGGAACACGATCGCGAAAACTCCCGTCAAGAAA
TTTTCCGCCTTCAAGAACAGATCGAGGAACTAGCAGAAGCCCTTAAAACC
CACGAACGGCTTACGATGGCACACAATACAGAGATAACGAAGTTGCGAAA
AGGGCTACTCGAGGAGGAAGCTGAGAAAGAGGAATACAAGAAACGGCTGG
AAAATACCAAGGGTCTCGATGAAGAGATGGGAAGGCTACGAAAAGCGTTG
ATACAAACAGAAGAAAGGGTGGCGGGGATGGAGGAAGGGGCAAAGCATGC
GAAGGAGAAGGAGATGGAGAGGAGGAGGGTTATCAGGGAGCAACGGAAAG
TGATAGAGAATGAATTGATGCTAGAGATGGAGAGGGTGGAGCAGGATATG
GCAGCGGCAGCAGTCAGAAATGGAGGAGGATCAGAAGCAGCAACAGGCAT
AAGTATTTGA
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Synonyms
Publications