jgi.p|Nanoce1779_2|592258, mRNA_5359 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592258
Unique Name	mRNA_5359
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2611
Alignment location	scaffold_13:240732..243342 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592344
Track	FilteredModels2
ProteinId	592258

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:240732..243342 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592258	gene_5359	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592258	mRNA_5359-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5359	CDS_5359	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:240732..243342-
coding sequence from alignment at scaffold_13:240732..243342-

mRNA sequence

>mRNA_5359 ID=mRNA_5359|Name=jgi.p|Nanoce1779_2|592258|organism=Nannochloropsis oceanica|type=mRNA|length=2611bp
AACAATAGGGGCCACTAAACATGGTCCAGCCAGACCAGGGCTATGCAAGG
TCCTTGGAAGCTCTAAATTCGACGCAGCTGCATGGAGATTCTCTGCGCCG
GGCCTACAGCGCTCGTCGCGATACCGTCAGAGCCATGAACGTCTACTTGC
ACCGGTTGGACCTTGCGAAGGGCGTGGCGAGTCTTCCGACCTTGCACGTG
ACAGGGAGCAAGGGCAAAGGATCCACCTGTGCGTTCGTCGAGTCAGTATT
GCGGCGGCAAGGCGTGCGGACGGTGCTCTTTACCTCACCACATTTGGTGC
GAGTCAATGAACGGATCCGCTTGGACGGGCAGCCATTGACAGACAAGCAA
TGGTCGCATCACTTCTGGGCCATGTGGAATCGTCTTCAGGAGACCGCGCC
ACCACCGCCAACACATCAGTCAAAACGCCCAAGCAGCACTTCGCCATATG
CCATCCCATTGGCCATCAACACCTACGAAGCCGAGCCTGAGGCGGTCCCC
GGTTACTTTCGGTTTTTGACACTCCTATGTTTTTGGGTCGCGCTGCAGGA
GAAGTCGGACGCACTTATCCTTGAGGTCGGCGTAGGCGGCCGTTTTGATG
CCACCAATGTGGTACCTCGGCCTGTGGCATGCGCCATTACCACGATGGAC
CTTGAGCACACGGATCTGCTTGGTGGCAGCATTGAGGAAATAGCTTGGGA
AAAAGGCGGCATCATCAAGTCTGGAGTTCCCTGCTTTGTTGGGCCACAAC
CAACACGTTACACAGCCTCAACCTTGCGTGTGCTGCGTACTTGTGCCCTA
GAGTCCCCCGGCGCGGCACTATATCTTGTGAAACCTTTACCGACCGAGAT
AAATCTGGGCATTGCAGGCGATTTTCAAGCCATGAACGCAGCCCTTGCCC
TGGCCTTGGTCCAACAGTACCACATTTCCCAATCCCACTCCCACCAACCA
CCAGGCCAAGTAGGCCTCGTAGGAGATGCGGATAAAGCGCTCGACGAAAA
GGGAGCTGCAGCGTGGGTGGACGTTGCCCCCTACTTGCTGGCTAACGAGC
CCACCGTAAGGGAGGGGCTTGAGGCCTGCGCGTGGCCTGGTCGGTGCCAG
CGCCTGGATTGGGGTCCATGCTGTCGCTTTTACATCGATGGAGCGCATAC
AGAGGAGAGCATGCGGACTGCGGTTGAATGGTTTGATGGTCAGGTCTCAC
AAAAAAAGAGAGGGAAACGTCGCCGTGTCCTTTTATTTAATTGCGGGGAA
GAAAAAAATGTTCCCGACCTATTGTCCTATCTGCTGAATCACAGAGCGAC
AGCAGTAGTAATAGCATCAGTATCAGAAGAGCCAGCTTTGTTACGTTTTG
ATACCGTCCTCTTTTGCCCGGTGGCCAGTGTAAAGCCTACCCTGGCTCAT
GCTCGCGCCGCGCGTATGCTTCTGCTGGAAGAAGGGGAGGAGGGGTCCTA
CGCCCGGCAGCTGGACCAAACAATGCTTCATTCTTTGTGCGAGGCGCTGG
ATGCAAAGGCAGAGGTGCAATTAGAGGGTTTACAGTGGCAACAGGCCTTG
CGCGATACCTGGCGGATCTTGCATGCGTACCACTTGAAAAAGTGGGCGCA
GGAGCAGAAGCAGAAGCAGGAGCAGGAGGAGGAGCAGGAGCAGGAGCAGG
AGACGGACTGGATCGATCGAGCCGACCGACAAACGCGAACGGCTGTATTT
CCTTCTGTGGCGGCGGTGTTGGAAGAAATCAAAGACATGCTGGCTGTTGA
GCCTCTGGAGGTGCTGGTGACGGGGTCGTTGTATCTGGTTGGGAATGTGC
TGGGACAGCTCGAGGAAGAAAGTTCGCCATCTTCTCCCAGCTCTCGAACA
TAAAAATCAATGCATGAGCATGAATAGAAGTGAGGACATGCCGGTTATGA
AGCGTTGAAGGTGTTGTTGACGGAGACGTGTTCGACAGGGAGTAAGTGCA
TGCTGGGCCGGCTCACTGAAACACTTCTTCCTCTCCAACGCTAAAAATTA
TCTCGCCGACCCTTGACCGACCGCTTGATAAAGGTCAATAACGTATGATA
TGTGCATCAGAACGGAATTTGGGGAAACGTTGGGAGTGTCTGAGCGGGGG
ACAGCATTGTGGGCCCAAAAAGGCACAGTTTCGAGGCGTCGCTGGGGCGC
GTAGTAACTGTCGAGGATGAAGCTCGGCAAAGCTGGGGTAGCATACACGA
AGAATTGGGGTAGTAGCCGGTGCTACGGGGTCTGTGAATTATGTGCTATA
TGACAGCCTCGTAAATGTGTGGCTAGGAATCGGCATCGGGAAGTTGCGCG
GAGACGAGGGAGGGGATATCAGCAGATGTGCAATTTCTTGTCTGTTAGGG
TTTATCTCTTCCAAGGAACTCTTCCCTTTATGTTTTTACATGTTTCAATT
CCAAAGCCCCTCTACCTTTAACATCAAAAATCCTCTCTGGGTGCGGACTC
AAGTCGTCAGTACAATTACAATGACTTTTAATGACGAGTAAAAAGCGTCG
AGCGTAATGGTTTCATTAACACCCTAACTCTCCTCCTTTACCTAGAACCT
GAACACGAGGAAGGAATTGAGATAAAATTAACTAAAGAAATGCAATTAGA
GACAAACCTGC

protein sequence of jgi.p|Nanoce1779_2|592258

>mRNA_5359-protein ID=mRNA_5359-protein|Name=jgi.p|Nanoce1779_2|592258|organism=Nannochloropsis oceanica|type=polypeptide|length=611bp
MVQPDQGYARSLEALNSTQLHGDSLRRAYSARRDTVRAMNVYLHRLDLAK
GVASLPTLHVTGSKGKGSTCAFVESVLRRQGVRTVLFTSPHLVRVNERIR
LDGQPLTDKQWSHHFWAMWNRLQETAPPPPTHQSKRPSSTSPYAIPLAIN
TYEAEPEAVPGYFRFLTLLCFWVALQEKSDALILEVGVGGRFDATNVVPR
PVACAITTMDLEHTDLLGGSIEEIAWEKGGIIKSGVPCFVGPQPTRYTAS
TLRVLRTCALESPGAALYLVKPLPTEINLGIAGDFQAMNAALALALVQQY
HISQSHSHQPPGQVGLVGDADKALDEKGAAAWVDVAPYLLANEPTVREGL
EACAWPGRCQRLDWGPCCRFYIDGAHTEESMRTAVEWFDGQVSQKKRGKR
RRVLLFNCGEEKNVPDLLSYLLNHRATAVVIASVSEEPALLRFDTVLFCP
VASVKPTLAHARAARMLLLEEGEEGSYARQLDQTMLHSLCEALDAKAEVQ
LEGLQWQQALRDTWRILHAYHLKKWAQEQKQKQEQEEEQEQEQETDWIDR
ADRQTRTAVFPSVAAVLEEIKDMLAVEPLEVLVTGSLYLVGNVLGQLEEE
SSPSSPSSRT*

mRNA from alignment at scaffold_13:240732..243342-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5359 ID=mRNA_5359|Name=jgi.p|Nanoce1779_2|592258|organism=Nannochloropsis oceanica|type=mRNA|length=2611bp|location=Sequence derived from alignment at scaffold_13:240732..243342- (Nannochloropsis oceanica)
AACAATAGGGGCCACTAAACATGGTCCAGCCAGACCAGGGCTATGCAAGG
TCCTTGGAAGCTCTAAATTCGACGCAGCTGCATGGAGATTCTCTGCGCCG
GGCCTACAGCGCTCGTCGCGATACCGTCAGAGCCATGAACGTCTACTTGC
ACCGGTTGGACCTTGCGAAGGGCGTGGCGAGTCTTCCGACCTTGCACGTG
ACAGGGAGCAAGGGCAAAGGATCCACCTGTGCGTTCGTCGAGTCAGTATT
GCGGCGGCAAGGCGTGCGGACGGTGCTCTTTACCTCACCACATTTGGTGC
GAGTCAATGAACGGATCCGCTTGGACGGGCAGCCATTGACAGACAAGCAA
TGGTCGCATCACTTCTGGGCCATGTGGAATCGTCTTCAGGAGACCGCGCC
ACCACCGCCAACACATCAGTCAAAACGCCCAAGCAGCACTTCGCCATATG
CCATCCCATTGGCCATCAACACCTACGAAGCCGAGCCTGAGGCGGTCCCC
GGTTACTTTCGGTTTTTGACACTCCTATGTTTTTGGGTCGCGCTGCAGGA
GAAGTCGGACGCACTTATCCTTGAGGTCGGCGTAGGCGGCCGTTTTGATG
CCACCAATGTGGTACCTCGGCCTGTGGCATGCGCCATTACCACGATGGAC
CTTGAGCACACGGATCTGCTTGGTGGCAGCATTGAGGAAATAGCTTGGGA
AAAAGGCGGCATCATCAAGTCTGGAGTTCCCTGCTTTGTTGGGCCACAAC
CAACACGTTACACAGCCTCAACCTTGCGTGTGCTGCGTACTTGTGCCCTA
GAGTCCCCCGGCGCGGCACTATATCTTGTGAAACCTTTACCGACCGAGAT
AAATCTGGGCATTGCAGGCGATTTTCAAGCCATGAACGCAGCCCTTGCCC
TGGCCTTGGTCCAACAGTACCACATTTCCCAATCCCACTCCCACCAACCA
CCAGGCCAAGTAGGCCTCGTAGGAGATGCGGATAAAGCGCTCGACGAAAA
GGGAGCTGCAGCGTGGGTGGACGTTGCCCCCTACTTGCTGGCTAACGAGC
CCACCGTAAGGGAGGGGCTTGAGGCCTGCGCGTGGCCTGGTCGGTGCCAG
CGCCTGGATTGGGGTCCATGCTGTCGCTTTTACATCGATGGAGCGCATAC
AGAGGAGAGCATGCGGACTGCGGTTGAATGGTTTGATGGTCAGGTCTCAC
AAAAAAAGAGAGGGAAACGTCGCCGTGTCCTTTTATTTAATTGCGGGGAA
GAAAAAAATGTTCCCGACCTATTGTCCTATCTGCTGAATCACAGAGCGAC
AGCAGTAGTAATAGCATCAGTATCAGAAGAGCCAGCTTTGTTACGTTTTG
ATACCGTCCTCTTTTGCCCGGTGGCCAGTGTAAAGCCTACCCTGGCTCAT
GCTCGCGCCGCGCGTATGCTTCTGCTGGAAGAAGGGGAGGAGGGGTCCTA
CGCCCGGCAGCTGGACCAAACAATGCTTCATTCTTTGTGCGAGGCGCTGG
ATGCAAAGGCAGAGGTGCAATTAGAGGGTTTACAGTGGCAACAGGCCTTG
CGCGATACCTGGCGGATCTTGCATGCGTACCACTTGAAAAAGTGGGCGCA
GGAGCAGAAGCAGAAGCAGGAGCAGGAGGAGGAGCAGGAGCAGGAGCAGG
AGACGGACTGGATCGATCGAGCCGACCGACAAACGCGAACGGCTGTATTT
CCTTCTGTGGCGGCGGTGTTGGAAGAAATCAAAGACATGCTGGCTGTTGA
GCCTCTGGAGGTGCTGGTGACGGGGTCGTTGTATCTGGTTGGGAATGTGC
TGGGACAGCTCGAGGAAGAAAGTTCGCCATCTTCTCCCAGCTCTCGAACA
TAAAAATCAATGCATGAGCATGAATAGAAGTGAGGACATGCCGGTTATGA
AGCGTTGAAGGTGTTGTTGACGGAGACGTGTTCGACAGGGAGTAAGTGCA
TGCTGGGCCGGCTCACTGAAACACTTCTTCCTCTCCAACGCTAAAAATTA
TCTCGCCGACCCTTGACCGACCGCTTGATAAAGGTCAATAACGTATGATA
TGTGCATCAGAACGGAATTTGGGGAAACGTTGGGAGTGTCTGAGCGGGGG
ACAGCATTGTGGGCCCAAAAAGGCACAGTTTCGAGGCGTCGCTGGGGCGC
GTAGTAACTGTCGAGGATGAAGCTCGGCAAAGCTGGGGTAGCATACACGA
AGAATTGGGGTAGTAGCCGGTGCTACGGGGTCTGTGAATTATGTGCTATA
TGACAGCCTCGTAAATGTGTGGCTAGGAATCGGCATCGGGAAGTTGCGCG
GAGACGAGGGAGGGGATATCAGCAGATGTGCAATTTCTTGTCTGTTAGGG
TTTATCTCTTCCAAGGAACTCTTCCCTTTATGTTTTTACATGTTTCAATT
CCAAAGCCCCTCTACCTTTAACATCAAAAATCCTCTCTGGGTGCGGACTC
AAGTCGTCAGTACAATTACAATGACTTTTAATGACGAGTAAAAAGCGTCG
AGCGTAATGGTTTCATTAACACCCTAACTCTCCTCCTTTACCTAGAACCT
GAACACGAGGAAGGAATTGAGATAAAATTAACTAAAGAAATGCAATTAGA
GACAAACCTGC

Coding sequence (CDS) from alignment at scaffold_13:240732..243342-

>mRNA_5359 ID=mRNA_5359|Name=jgi.p|Nanoce1779_2|592258|organism=Nannochloropsis oceanica|type=CDS|length=1833bp|location=Sequence derived from alignment at scaffold_13:240732..243342- (Nannochloropsis oceanica)
ATGGTCCAGCCAGACCAGGGCTATGCAAGGTCCTTGGAAGCTCTAAATTC
GACGCAGCTGCATGGAGATTCTCTGCGCCGGGCCTACAGCGCTCGTCGCG
ATACCGTCAGAGCCATGAACGTCTACTTGCACCGGTTGGACCTTGCGAAG
GGCGTGGCGAGTCTTCCGACCTTGCACGTGACAGGGAGCAAGGGCAAAGG
ATCCACCTGTGCGTTCGTCGAGTCAGTATTGCGGCGGCAAGGCGTGCGGA
CGGTGCTCTTTACCTCACCACATTTGGTGCGAGTCAATGAACGGATCCGC
TTGGACGGGCAGCCATTGACAGACAAGCAATGGTCGCATCACTTCTGGGC
CATGTGGAATCGTCTTCAGGAGACCGCGCCACCACCGCCAACACATCAGT
CAAAACGCCCAAGCAGCACTTCGCCATATGCCATCCCATTGGCCATCAAC
ACCTACGAAGCCGAGCCTGAGGCGGTCCCCGGTTACTTTCGGTTTTTGAC
ACTCCTATGTTTTTGGGTCGCGCTGCAGGAGAAGTCGGACGCACTTATCC
TTGAGGTCGGCGTAGGCGGCCGTTTTGATGCCACCAATGTGGTACCTCGG
CCTGTGGCATGCGCCATTACCACGATGGACCTTGAGCACACGGATCTGCT
TGGTGGCAGCATTGAGGAAATAGCTTGGGAAAAAGGCGGCATCATCAAGT
CTGGAGTTCCCTGCTTTGTTGGGCCACAACCAACACGTTACACAGCCTCA
ACCTTGCGTGTGCTGCGTACTTGTGCCCTAGAGTCCCCCGGCGCGGCACT
ATATCTTGTGAAACCTTTACCGACCGAGATAAATCTGGGCATTGCAGGCG
ATTTTCAAGCCATGAACGCAGCCCTTGCCCTGGCCTTGGTCCAACAGTAC
CACATTTCCCAATCCCACTCCCACCAACCACCAGGCCAAGTAGGCCTCGT
AGGAGATGCGGATAAAGCGCTCGACGAAAAGGGAGCTGCAGCGTGGGTGG
ACGTTGCCCCCTACTTGCTGGCTAACGAGCCCACCGTAAGGGAGGGGCTT
GAGGCCTGCGCGTGGCCTGGTCGGTGCCAGCGCCTGGATTGGGGTCCATG
CTGTCGCTTTTACATCGATGGAGCGCATACAGAGGAGAGCATGCGGACTG
CGGTTGAATGGTTTGATGGTCAGGTCTCACAAAAAAAGAGAGGGAAACGT
CGCCGTGTCCTTTTATTTAATTGCGGGGAAGAAAAAAATGTTCCCGACCT
ATTGTCCTATCTGCTGAATCACAGAGCGACAGCAGTAGTAATAGCATCAG
TATCAGAAGAGCCAGCTTTGTTACGTTTTGATACCGTCCTCTTTTGCCCG
GTGGCCAGTGTAAAGCCTACCCTGGCTCATGCTCGCGCCGCGCGTATGCT
TCTGCTGGAAGAAGGGGAGGAGGGGTCCTACGCCCGGCAGCTGGACCAAA
CAATGCTTCATTCTTTGTGCGAGGCGCTGGATGCAAAGGCAGAGGTGCAA
TTAGAGGGTTTACAGTGGCAACAGGCCTTGCGCGATACCTGGCGGATCTT
GCATGCGTACCACTTGAAAAAGTGGGCGCAGGAGCAGAAGCAGAAGCAGG
AGCAGGAGGAGGAGCAGGAGCAGGAGCAGGAGACGGACTGGATCGATCGA
GCCGACCGACAAACGCGAACGGCTGTATTTCCTTCTGTGGCGGCGGTGTT
GGAAGAAATCAAAGACATGCTGGCTGTTGAGCCTCTGGAGGTGCTGGTGA
CGGGGTCGTTGTATCTGGTTGGGAATGTGCTGGGACAGCTCGAGGAAGAA
AGTTCGCCATCTTCTCCCAGCTCTCGAACATAA

Synonyms

Publications