jgi.p|Nanoce1779_2|592467, mRNA_5423 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592467
Unique Name	mRNA_5423
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3047
Alignment location	scaffold_13:397140..400186 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592553
Track	FilteredModels2
ProteinId	592467

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:397140..400186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592467	gene_5423	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592467	mRNA_5423-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5423	CDS_5423	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:397140..400186+
coding sequence from alignment at scaffold_13:397140..400186+

mRNA sequence

>mRNA_5423 ID=mRNA_5423|Name=jgi.p|Nanoce1779_2|592467|organism=Nannochloropsis oceanica|type=mRNA|length=3047bp
ACAGGAACAGGGCGGCTTGCTCATCTGAGCTGCACCGTTGCCTGGCCACA
CGCTAAGACTAGGGGGCGAGAGCAGCGAGGTGCCCCACGCACGCCTTGAA
TAGCACCACCATCATCAGCTACGACGCGATGCAGTACGGCAGGACAAAGA
GGACGATCACCACCTGAATCTCAAGCGAGCAAACTCTCACAAATCATTGG
AAGGAGCGGTGACATCTCACAGACGCAGGCGGGGAAGCCACCCCCTGGAA
CATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAG
GCCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGT
GGTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACT
GCAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAG
CGGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTG
CTGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCG
ATGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGG
GGCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATT
CCGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCA
TTTGATGAACCTTTTGACTACGGGTGAGACACTTGCAAGAGGAGGGAGGC
AGTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGT
ACCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGT
GTCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCA
ACACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGA
GGGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCA
ACGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATG
CCGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTG
AACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGT
GCACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGAC
TTGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTAC
ATGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTC
TGCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACG
CCCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCAC
CCCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGA
CGACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCT
CCTACTCCTCTTCCTCCCATCGCCCCCCCCCCCCTCTCCGGCAGCAGCAG
CAGCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGA
GGAAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGC
GGGCCGTAACGGTGAGGAAGGTGTTTGGGGAGCTGTGGCATTGGAAAGAG
CAACGGATTCGGAATTCCTCCCCTTTCGGGAGATTGGAAGGGTGGCGGCT
AGCAATGTTCATTGTCAAGGCTGGGGATGACTTGAGACAGGAGCAAGTGG
CCATGCAACTTATTACGTTGGTCAGGGAAATATTTAAGGAGGAAGGATTG
GATTTATGGTTGAGGCCTTATGGAATCGTGTGTGTTGGGGACCAGGCGGG
ATTGATTGAGGCGGTTGCGGATGCGAAGAGCATCGATCATGTGAAGAAGC
GGGCACCATATTTCACGGATTTGAGGGAGTATTACGAGCGGATATATGGG
GGTCCATATTCGAGGACATTCAGGGAAGCGCAAAGGAATTTCATGAGGAG
TTTGGCCGGCTATTGTATTTGTACGTATTTGCTTCAGGTCAAGGACAGGC
ACAATGCGAATATTCTGATTGATAAACAGGGACATTTGATCCACATTGAC
TTTGGATTTATGTTAGGGGCGAGCCCCGGGTCTATCTCGTTTGAAAGTGC
GCCATTTAAGCTGACGAAGGAGTATGTAGATCTCATGGGCGGGCAGGGGG
GACAGGGATGGTTAGAATTTAGGTCTTTAGTGGTGAGGGGTTTCGATGTG
TTGAACCGCCCCAGGCATCGACGGAGATTGCTTGATATGATGGCGGTGTC
AATATTCGAGGTACCAAGCAAGGCAGCGCTCCTGGATAGTTTCGATAAGA
GGCTGATGCATGCGAGTTTCCCACCGAATGCCTTGGCGTTGGTGGATGAG
AGCTATGATAATTACCGGACAAAAATGTACGATTCGTATCAAAAGCGACG
GAATGGGATTTGGTGATGTCGGGTTGGGAAAGTGTGGGTGGGAAAACGGT
GGGATACGATATGCGAGGAACAGCTACGGGAGATGACGATCGGATAAGCT
CCTCTCTGCAGCAGAAACGGGTTGCATTTTTCACCAGACATGGCATGGAG
ACGCGTGGGTGCTTAGGTTTTGAGCACTGAGGCCCCATCCCCGAATTTAG
CCTGTATTACGGAGTGCTCCTCCTGTCCCCCTCCAAAAGTGTGATGAAAT
GACTTTGAGAAAATTATTCAGAAGCAACATGGCATAAAAAAATAAAGCAT
GCCCTGACTTGACTTTCAAATGTAGAAACAGTTGGTAATGAATGGCCGCC
GTTGGAGGGCTCGCGCACCCTTCGTGTGTGCGCCACGCAAGGCCTCTTCA
AAAATATAACGCTTGCTCACACAAAGGAGTAATAATTAATGAATGAATGG
CCGCCGTTGGGGGGCTTGCGCACCCTTCGTGTGTGCGCCACGCAAGGCCT
CTCCAAAAATATAACGCTTGCTCACGCAGAGGAGTAATAATTAATGA

protein sequence of jgi.p|Nanoce1779_2|592467

>mRNA_5423-protein ID=mRNA_5423-protein|Name=jgi.p|Nanoce1779_2|592467|organism=Nannochloropsis oceanica|type=polypeptide|length=755bp
MFSLLPFLVYWLAVQEGLRVGGPGGPGGGQGLSGGSLGGFMGSGGGVSPL
QGPLGSFDADAMALTPAVFDSQIEECMPQIATLLACTKVDGPPDTMRRNR
WIEQQVIEKCTSNVHLGLKLYWLLRAALGHLEIPTRRGLPQITGERQRAH
LMNLLTTGETLARGGRQSPGCLASLRARYFAHCTNFVAALVKLSFELKGV
SSLRRLTALQQGIDRVNTLLFRLMHTRGEEMEGGSEEASSQQQPFYARGQ
RPPPSYQPPPPPLPPYAGGSTGSTANSNNPNWLNEEHIARQCPEVAAHSV
HLPMLDGANPIFRFLRLVSGECELLPSRERCPYMVVAELLQTERNTRCGS
ARLYTNGATLGCSIWDALDQRQFPESLLYPDDHPAMRFPMKPFLFNNDYD
DDQDYFLDLHATPLSPSYSSSSHRPPPPLRQQQQQQQQHPSFPPFFTTEE
EALSAMDPRQLDPGTRRAVTVRKVFGELWHWKEQRIRNSSPFGRLEGWRL
AMFIVKAGDDLRQEQVAMQLITLVREIFKEEGLDLWLRPYGIVCVGDQAG
LIEAVADAKSIDHVKKRAPYFTDLREYYERIYGGPYSRTFREAQRNFMRS
LAGYCICTYLLQVKDRHNANILIDKQGHLIHIDFGFMLGASPGSISFESA
PFKLTKEYVDLMGGQGGQGWLEFRSLVVRGFDVLNRPRHRRRLLDMMAVS
IFEVPSKAALLDSFDKRLMHASFPPNALALVDESYDNYRTKMYDSYQKRR
NGIW*

mRNA from alignment at scaffold_13:397140..400186+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5423 ID=mRNA_5423|Name=jgi.p|Nanoce1779_2|592467|organism=Nannochloropsis oceanica|type=mRNA|length=3047bp|location=Sequence derived from alignment at scaffold_13:397140..400186+ (Nannochloropsis oceanica)
ACAGGAACAGGGCGGCTTGCTCATCTGAGCTGCACCGTTGCCTGGCCACA
CGCTAAGACTAGGGGGCGAGAGCAGCGAGGTGCCCCACGCACGCCTTGAA
TAGCACCACCATCATCAGCTACGACGCGATGCAGTACGGCAGGACAAAGA
GGACGATCACCACCTGAATCTCAAGCGAGCAAACTCTCACAAATCATTGG
AAGGAGCGGTGACATCTCACAGACGCAGGCGGGGAAGCCACCCCCTGGAA
CATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAG
GCCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGT
GGTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACT
GCAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAG
CGGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTG
CTGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCG
ATGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGG
GGCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATT
CCGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCA
TTTGATGAACCTTTTGACTACGGGTGAGACACTTGCAAGAGGAGGGAGGC
AGTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGT
ACCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGT
GTCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCA
ACACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGA
GGGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCA
ACGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATG
CCGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTG
AACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGT
GCACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGAC
TTGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTAC
ATGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTC
TGCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACG
CCCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCAC
CCCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGA
CGACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCT
CCTACTCCTCTTCCTCCCATCGCCCCCCCCCCCCTCTCCGGCAGCAGCAG
CAGCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGA
GGAAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGC
GGGCCGTAACGGTGAGGAAGGTGTTTGGGGAGCTGTGGCATTGGAAAGAG
CAACGGATTCGGAATTCCTCCCCTTTCGGGAGATTGGAAGGGTGGCGGCT
AGCAATGTTCATTGTCAAGGCTGGGGATGACTTGAGACAGGAGCAAGTGG
CCATGCAACTTATTACGTTGGTCAGGGAAATATTTAAGGAGGAAGGATTG
GATTTATGGTTGAGGCCTTATGGAATCGTGTGTGTTGGGGACCAGGCGGG
ATTGATTGAGGCGGTTGCGGATGCGAAGAGCATCGATCATGTGAAGAAGC
GGGCACCATATTTCACGGATTTGAGGGAGTATTACGAGCGGATATATGGG
GGTCCATATTCGAGGACATTCAGGGAAGCGCAAAGGAATTTCATGAGGAG
TTTGGCCGGCTATTGTATTTGTACGTATTTGCTTCAGGTCAAGGACAGGC
ACAATGCGAATATTCTGATTGATAAACAGGGACATTTGATCCACATTGAC
TTTGGATTTATGTTAGGGGCGAGCCCCGGGTCTATCTCGTTTGAAAGTGC
GCCATTTAAGCTGACGAAGGAGTATGTAGATCTCATGGGCGGGCAGGGGG
GACAGGGATGGTTAGAATTTAGGTCTTTAGTGGTGAGGGGTTTCGATGTG
TTGAACCGCCCCAGGCATCGACGGAGATTGCTTGATATGATGGCGGTGTC
AATATTCGAGGTACCAAGCAAGGCAGCGCTCCTGGATAGTTTCGATAAGA
GGCTGATGCATGCGAGTTTCCCACCGAATGCCTTGGCGTTGGTGGATGAG
AGCTATGATAATTACCGGACAAAAATGTACGATTCGTATCAAAAGCGACG
GAATGGGATTTGGTGATGTCGGGTTGGGAAAGTGTGGGTGGGAAAACGGT
GGGATACGATATGCGAGGAACAGCTACGGGAGATGACGATCGGATAAGCT
CCTCTCTGCAGCAGAAACGGGTTGCATTTTTCACCAGACATGGCATGGAG
ACGCGTGGGTGCTTAGGTTTTGAGCACTGAGGCCCCATCCCCGAATTTAG
CCTGTATTACGGAGTGCTCCTCCTGTCCCCCTCCAAAAGTGTGATGAAAT
GACTTTGAGAAAATTATTCAGAAGCAACATGGCATAAAAAAATAAAGCAT
GCCCTGACTTGACTTTCAAATGTAGAAACAGTTGGTAATGAATGGCCGCC
GTTGGAGGGCTCGCGCACCCTTCGTGTGTGCGCCACGCAAGGCCTCTTCA
AAAATATAACGCTTGCTCACACAAAGGAGTAATAATTAATGAATGAATGG
CCGCCGTTGGGGGGCTTGCGCACCCTTCGTGTGTGCGCCACGCAAGGCCT
CTCCAAAAATATAACGCTTGCTCACGCAGAGGAGTAATAATTAATGA

Coding sequence (CDS) from alignment at scaffold_13:397140..400186+

>mRNA_5423 ID=mRNA_5423|Name=jgi.p|Nanoce1779_2|592467|organism=Nannochloropsis oceanica|type=CDS|length=2265bp|location=Sequence derived from alignment at scaffold_13:397140..400186+ (Nannochloropsis oceanica)
ATGTTTAGTCTTCTACCATTCCTCGTGTACTGGTTGGCCGTGCAGGAAGG
CCTGCGGGTTGGCGGACCCGGCGGTCCAGGAGGGGGACAGGGTCTCAGTG
GTGGCAGCTTGGGGGGGTTCATGGGTTCGGGAGGAGGGGTATCACCACTG
CAAGGCCCATTGGGAAGCTTTGACGCAGACGCTATGGCGCTTACCCCAGC
GGTCTTTGATTCGCAGATTGAGGAATGCATGCCACAGATTGCCACATTGC
TGGCATGTACCAAGGTGGATGGGCCTCCAGACACAATGCGGCGGAACCGA
TGGATCGAGCAGCAAGTAATTGAAAAATGCACGTCGAATGTTCATCTGGG
GCTTAAGCTTTATTGGTTGTTGCGTGCGGCGTTGGGCCACTTGGAGATTC
CGACTCGGCGGGGATTGCCTCAAATAACGGGCGAGCGACAGCGGGCGCAT
TTGATGAACCTTTTGACTACGGGTGAGACACTTGCAAGAGGAGGGAGGCA
GTCTCCAGGGTGTTTGGCGTCGTTGCGGGCACGGTATTTTGCGCACTGTA
CCAATTTTGTGGCGGCGCTTGTGAAGTTGTCGTTTGAGCTGAAAGGCGTG
TCATCCTTGCGCCGACTGACTGCATTACAACAAGGCATCGATCGGGTCAA
CACCTTGCTCTTTCGTCTTATGCACACACGAGGCGAAGAGATGGAGGGAG
GGTCGGAGGAAGCATCATCCCAACAGCAGCCTTTTTACGCCCGCGGCCAA
CGGCCACCCCCCTCCTACCAACCACCACCACCACCCCTTCCACCATATGC
CGGCGGCAGTACCGGTAGCACCGCAAACAGCAACAATCCTAATTGGCTGA
ACGAAGAACACATCGCGCGACAATGCCCCGAAGTGGCCGCCCATTCGGTG
CACCTTCCCATGCTAGATGGTGCCAATCCCATCTTCCGTTTCCTCAGACT
TGTCAGCGGGGAATGCGAACTTCTTCCCTCCCGCGAGCGTTGTCCGTACA
TGGTCGTCGCGGAGCTGCTCCAAACCGAACGCAACACCCGCTGTGGCTCT
GCACGTCTCTACACGAACGGTGCGACTCTCGGCTGCTCGATCTGGGACGC
CCTTGACCAGCGCCAATTCCCTGAATCACTCCTCTACCCTGACGATCACC
CCGCCATGCGCTTCCCCATGAAACCCTTTCTCTTCAACAACGACTACGAC
GACGATCAAGACTATTTCCTCGACCTCCACGCAACTCCACTCTCTCCCTC
CTACTCCTCTTCCTCCCATCGCCCCCCCCCCCCTCTCCGGCAGCAGCAGC
AGCAACAACAACAACATCCCTCCTTCCCTCCCTTCTTTACCACCGAGGAG
GAAGCTCTCTCAGCCATGGATCCGCGTCAGCTTGACCCTGGCACAAGGCG
GGCCGTAACGGTGAGGAAGGTGTTTGGGGAGCTGTGGCATTGGAAAGAGC
AACGGATTCGGAATTCCTCCCCTTTCGGGAGATTGGAAGGGTGGCGGCTA
GCAATGTTCATTGTCAAGGCTGGGGATGACTTGAGACAGGAGCAAGTGGC
CATGCAACTTATTACGTTGGTCAGGGAAATATTTAAGGAGGAAGGATTGG
ATTTATGGTTGAGGCCTTATGGAATCGTGTGTGTTGGGGACCAGGCGGGA
TTGATTGAGGCGGTTGCGGATGCGAAGAGCATCGATCATGTGAAGAAGCG
GGCACCATATTTCACGGATTTGAGGGAGTATTACGAGCGGATATATGGGG
GTCCATATTCGAGGACATTCAGGGAAGCGCAAAGGAATTTCATGAGGAGT
TTGGCCGGCTATTGTATTTGTACGTATTTGCTTCAGGTCAAGGACAGGCA
CAATGCGAATATTCTGATTGATAAACAGGGACATTTGATCCACATTGACT
TTGGATTTATGTTAGGGGCGAGCCCCGGGTCTATCTCGTTTGAAAGTGCG
CCATTTAAGCTGACGAAGGAGTATGTAGATCTCATGGGCGGGCAGGGGGG
ACAGGGATGGTTAGAATTTAGGTCTTTAGTGGTGAGGGGTTTCGATGTGT
TGAACCGCCCCAGGCATCGACGGAGATTGCTTGATATGATGGCGGTGTCA
ATATTCGAGGTACCAAGCAAGGCAGCGCTCCTGGATAGTTTCGATAAGAG
GCTGATGCATGCGAGTTTCCCACCGAATGCCTTGGCGTTGGTGGATGAGA
GCTATGATAATTACCGGACAAAAATGTACGATTCGTATCAAAAGCGACGG
AATGGGATTTGGTGA

Synonyms

Publications