jgi.p|Nanoce1779_2|592885, mRNA_5541 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592885
Unique NamemRNA_5541
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2032
Alignment locationscaffold_13:670443..672474 -

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Properties
Property NameValue
TranscriptId592971
TrackFilteredModels2
ProteinId592885
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:670443..672474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592885gene_5541Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592885mRNA_5541-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5541CDS_5541Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5541 ID=mRNA_5541|Name=jgi.p|Nanoce1779_2|592885|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp
GGGAGAGGGAGGGGGGGGTGGAGGGAGGGATGGACGGGGATGCGTCCTTG
TTGGCCAACTCGTTGAATCCCTCGCCATTGGGCGTTAATCTGACAGCGAT
TATGTTGGAGGAAACAGACGCGGGCAAAGTGAAGGACGGGCTGCTCGAGG
GGTTCCTGCAATCTATCTTTCCTACGGCTCAGGAAGGGGGGTTGGGAGGG
GAGGGAGGGGAAGGGAAGGAGGAAGTGCCGCCTCTGCCGGAAGATACCTG
GCATACGATCAGATCCGAGGTATTTGGTAAGACCGCTGGGGGCGCCTTCT
CGCTGAATTATGTGGTTGATTTCGATTCCAAGTTTCACGTGATGGTGGGG
GAGATCGGGGAGGGTCCCTCGGGCGCGACGTTAAACACCCAGGCGTTGCG
TCAAGTGTTGGAGAAGAGATTGGATTATTTCAATCTGACGGAGACTGTGT
CGTTGTTCTTTTTGCGATTTCCTCCCGAGACCCTGTTTGAGTTGGAAGAC
ATTGCTATGGACGCGGCGATGGACCAGTTTGATGAGAATGGAGGGCCGCC
GGAGGGAGGAAAGGGAAACCGTCAGGGAAAGCGGGGGGGGGCACGTATGG
ATGAGGACGATGGGCTGGACGGGTCAGATTTGCAGTTACTGGGGGAGTTA
GTTCCTCGGTTTTTGGGCAAACTGGCTCAGGGTCGATTTGCTATTCTGGC
CGTGGCGAAACGGGACGCGCCTGACGATTCTAGTGTGTTGGACGATCCGA
TTGTGCGCCTGGCGACCGTTGCGATGGGATCTGTGTTGCAGACTTCGGAG
ACCTTGCGCTATGTCTCTCCACCGCTGTTTGAGCGGCTGGACCAGGACCT
GCCCGGCTTTGTGACACACGCATCCGAGTTTCCAGCGCTGACCCAAGGTG
TGCCTCCTGTCCTCTTTCCCTTTTTGGGACTGATTGTCGCGCATGAAGCT
GGACACTGGCTGGCCGCAAAGCGCTCGAATATGGAGCTGGGCCCGTTTGT
GCCTCTGCTTGATCCCTGGTTTGGCTACTTTGGAAGTTTGACTCAACTAA
AATCGTACCCGCCCACGCGCAAGGCGTTCTTTGACGTGTCGGCTGCGGGA
CCCTTGTTAGGATCCCTGGTGAGTTATGCGGCGCTTGCGGGTGGGCTGTG
GCTGACCAAGTTGGGAGTGTTGCCGTCGGGGGGTGAGTTCGCCCCGGCGT
TGCCCCTGTCGTTGCTGCAGGCGTCGACCTTTGTAGCGGAGATGACGAAC
GCCTTCTTGCCGGGAGCCTTTGCGGTTGTGGACCCCGAGCATGCAGCCCT
CACGCTGCATCCGTTGGCGCTGGCGGGGTATTGGGGCGTGATGTTTAATG
CGCTGAACCTCTTGCCTATGGGTCGCTTGGATGGGGCACGTATGGTGGAA
TCGCTTCTGGGAAAGCGCACGGCGTCGGCAGCCTCGACTTTTACGTTTTG
GGGGACCATTGCCGCGGGTATTTGGCAGAATCGGTTGGACCTGTTTTTTG
CAGGAATCGTAGTGCGCTTGTTTTGGTATCGCAAGGCCGTGCCGTGTCTA
GATGAGGTGGAGGAAGTGAGTGGAGACAGGTATTTCCTGGGCGTGGCGGG
ATTGATATTGATGCTGGGCGCCTTGATACCGGCGACATCGATGTTCGCGG
GGGATAGTACGTACCTGTTGAATAATCTTTAGAGGAAGTGGAAGCAGGAG
TAAGGGGAAGTGTTTCAAGTATGACTGGAAAGAATCAGAGAGCAGAGTAT
AAAGAATTGAGGAAGATAGTAAGTCGGTGGAGAAAATGGTGAAAATCTCG
CATTATGGGTTGTTTATGGAGGACATGTCATGAATACACCACCTGTCATG
AATTTCTTTCTCTTTTCAAAAGTCACGACCTTCCTTGCACAAATACGCCA
GTACAAAAGTCGGAGTCATGCATTTCAAATCAAAAACAGGCCCCGAGCTT
CAGCGAAGAAGAGCATGTCGAAGATCGACACATGTCATGCGCATAGGAAG
AGCGGTGCACTTCGCGCTCACCTGCTTTGAAC
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protein sequence of jgi.p|Nanoce1779_2|592885

>mRNA_5541-protein ID=mRNA_5541-protein|Name=jgi.p|Nanoce1779_2|592885|organism=Nannochloropsis oceanica|type=polypeptide|length=551bp
MDGDASLLANSLNPSPLGVNLTAIMLEETDAGKVKDGLLEGFLQSIFPTA
QEGGLGGEGGEGKEEVPPLPEDTWHTIRSEVFGKTAGGAFSLNYVVDFDS
KFHVMVGEIGEGPSGATLNTQALRQVLEKRLDYFNLTETVSLFFLRFPPE
TLFELEDIAMDAAMDQFDENGGPPEGGKGNRQGKRGGARMDEDDGLDGSD
LQLLGELVPRFLGKLAQGRFAILAVAKRDAPDDSSVLDDPIVRLATVAMG
SVLQTSETLRYVSPPLFERLDQDLPGFVTHASEFPALTQGVPPVLFPFLG
LIVAHEAGHWLAAKRSNMELGPFVPLLDPWFGYFGSLTQLKSYPPTRKAF
FDVSAAGPLLGSLVSYAALAGGLWLTKLGVLPSGGEFAPALPLSLLQAST
FVAEMTNAFLPGAFAVVDPEHAALTLHPLALAGYWGVMFNALNLLPMGRL
DGARMVESLLGKRTASAASTFTFWGTIAAGIWQNRLDLFFAGIVVRLFWY
RKAVPCLDEVEEVSGDRYFLGVAGLILMLGALIPATSMFAGDSTYLLNNL
*
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mRNA from alignment at scaffold_13:670443..672474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5541 ID=mRNA_5541|Name=jgi.p|Nanoce1779_2|592885|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp|location=Sequence derived from alignment at scaffold_13:670443..672474- (Nannochloropsis oceanica)
GGGAGAGGGAGGGGGGGGTGGAGGGAGGGATGGACGGGGATGCGTCCTTG
TTGGCCAACTCGTTGAATCCCTCGCCATTGGGCGTTAATCTGACAGCGAT
TATGTTGGAGGAAACAGACGCGGGCAAAGTGAAGGACGGGCTGCTCGAGG
GGTTCCTGCAATCTATCTTTCCTACGGCTCAGGAAGGGGGGTTGGGAGGG
GAGGGAGGGGAAGGGAAGGAGGAAGTGCCGCCTCTGCCGGAAGATACCTG
GCATACGATCAGATCCGAGGTATTTGGTAAGACCGCTGGGGGCGCCTTCT
CGCTGAATTATGTGGTTGATTTCGATTCCAAGTTTCACGTGATGGTGGGG
GAGATCGGGGAGGGTCCCTCGGGCGCGACGTTAAACACCCAGGCGTTGCG
TCAAGTGTTGGAGAAGAGATTGGATTATTTCAATCTGACGGAGACTGTGT
CGTTGTTCTTTTTGCGATTTCCTCCCGAGACCCTGTTTGAGTTGGAAGAC
ATTGCTATGGACGCGGCGATGGACCAGTTTGATGAGAATGGAGGGCCGCC
GGAGGGAGGAAAGGGAAACCGTCAGGGAAAGCGGGGGGGGGCACGTATGG
ATGAGGACGATGGGCTGGACGGGTCAGATTTGCAGTTACTGGGGGAGTTA
GTTCCTCGGTTTTTGGGCAAACTGGCTCAGGGTCGATTTGCTATTCTGGC
CGTGGCGAAACGGGACGCGCCTGACGATTCTAGTGTGTTGGACGATCCGA
TTGTGCGCCTGGCGACCGTTGCGATGGGATCTGTGTTGCAGACTTCGGAG
ACCTTGCGCTATGTCTCTCCACCGCTGTTTGAGCGGCTGGACCAGGACCT
GCCCGGCTTTGTGACACACGCATCCGAGTTTCCAGCGCTGACCCAAGGTG
TGCCTCCTGTCCTCTTTCCCTTTTTGGGACTGATTGTCGCGCATGAAGCT
GGACACTGGCTGGCCGCAAAGCGCTCGAATATGGAGCTGGGCCCGTTTGT
GCCTCTGCTTGATCCCTGGTTTGGCTACTTTGGAAGTTTGACTCAACTAA
AATCGTACCCGCCCACGCGCAAGGCGTTCTTTGACGTGTCGGCTGCGGGA
CCCTTGTTAGGATCCCTGGTGAGTTATGCGGCGCTTGCGGGTGGGCTGTG
GCTGACCAAGTTGGGAGTGTTGCCGTCGGGGGGTGAGTTCGCCCCGGCGT
TGCCCCTGTCGTTGCTGCAGGCGTCGACCTTTGTAGCGGAGATGACGAAC
GCCTTCTTGCCGGGAGCCTTTGCGGTTGTGGACCCCGAGCATGCAGCCCT
CACGCTGCATCCGTTGGCGCTGGCGGGGTATTGGGGCGTGATGTTTAATG
CGCTGAACCTCTTGCCTATGGGTCGCTTGGATGGGGCACGTATGGTGGAA
TCGCTTCTGGGAAAGCGCACGGCGTCGGCAGCCTCGACTTTTACGTTTTG
GGGGACCATTGCCGCGGGTATTTGGCAGAATCGGTTGGACCTGTTTTTTG
CAGGAATCGTAGTGCGCTTGTTTTGGTATCGCAAGGCCGTGCCGTGTCTA
GATGAGGTGGAGGAAGTGAGTGGAGACAGGTATTTCCTGGGCGTGGCGGG
ATTGATATTGATGCTGGGCGCCTTGATACCGGCGACATCGATGTTCGCGG
GGGATAGTACGTACCTGTTGAATAATCTTTAGAGGAAGTGGAAGCAGGAG
TAAGGGGAAGTGTTTCAAGTATGACTGGAAAGAATCAGAGAGCAGAGTAT
AAAGAATTGAGGAAGATAGTAAGTCGGTGGAGAAAATGGTGAAAATCTCG
CATTATGGGTTGTTTATGGAGGACATGTCATGAATACACCACCTGTCATG
AATTTCTTTCTCTTTTCAAAAGTCACGACCTTCCTTGCACAAATACGCCA
GTACAAAAGTCGGAGTCATGCATTTCAAATCAAAAACAGGCCCCGAGCTT
CAGCGAAGAAGAGCATGTCGAAGATCGACACATGTCATGCGCATAGGAAG
AGCGGTGCACTTCGCGCTCACCTGCTTTGAAC
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Coding sequence (CDS) from alignment at scaffold_13:670443..672474-

>mRNA_5541 ID=mRNA_5541|Name=jgi.p|Nanoce1779_2|592885|organism=Nannochloropsis oceanica|type=CDS|length=1653bp|location=Sequence derived from alignment at scaffold_13:670443..672474- (Nannochloropsis oceanica)
ATGGACGGGGATGCGTCCTTGTTGGCCAACTCGTTGAATCCCTCGCCATT
GGGCGTTAATCTGACAGCGATTATGTTGGAGGAAACAGACGCGGGCAAAG
TGAAGGACGGGCTGCTCGAGGGGTTCCTGCAATCTATCTTTCCTACGGCT
CAGGAAGGGGGGTTGGGAGGGGAGGGAGGGGAAGGGAAGGAGGAAGTGCC
GCCTCTGCCGGAAGATACCTGGCATACGATCAGATCCGAGGTATTTGGTA
AGACCGCTGGGGGCGCCTTCTCGCTGAATTATGTGGTTGATTTCGATTCC
AAGTTTCACGTGATGGTGGGGGAGATCGGGGAGGGTCCCTCGGGCGCGAC
GTTAAACACCCAGGCGTTGCGTCAAGTGTTGGAGAAGAGATTGGATTATT
TCAATCTGACGGAGACTGTGTCGTTGTTCTTTTTGCGATTTCCTCCCGAG
ACCCTGTTTGAGTTGGAAGACATTGCTATGGACGCGGCGATGGACCAGTT
TGATGAGAATGGAGGGCCGCCGGAGGGAGGAAAGGGAAACCGTCAGGGAA
AGCGGGGGGGGGCACGTATGGATGAGGACGATGGGCTGGACGGGTCAGAT
TTGCAGTTACTGGGGGAGTTAGTTCCTCGGTTTTTGGGCAAACTGGCTCA
GGGTCGATTTGCTATTCTGGCCGTGGCGAAACGGGACGCGCCTGACGATT
CTAGTGTGTTGGACGATCCGATTGTGCGCCTGGCGACCGTTGCGATGGGA
TCTGTGTTGCAGACTTCGGAGACCTTGCGCTATGTCTCTCCACCGCTGTT
TGAGCGGCTGGACCAGGACCTGCCCGGCTTTGTGACACACGCATCCGAGT
TTCCAGCGCTGACCCAAGGTGTGCCTCCTGTCCTCTTTCCCTTTTTGGGA
CTGATTGTCGCGCATGAAGCTGGACACTGGCTGGCCGCAAAGCGCTCGAA
TATGGAGCTGGGCCCGTTTGTGCCTCTGCTTGATCCCTGGTTTGGCTACT
TTGGAAGTTTGACTCAACTAAAATCGTACCCGCCCACGCGCAAGGCGTTC
TTTGACGTGTCGGCTGCGGGACCCTTGTTAGGATCCCTGGTGAGTTATGC
GGCGCTTGCGGGTGGGCTGTGGCTGACCAAGTTGGGAGTGTTGCCGTCGG
GGGGTGAGTTCGCCCCGGCGTTGCCCCTGTCGTTGCTGCAGGCGTCGACC
TTTGTAGCGGAGATGACGAACGCCTTCTTGCCGGGAGCCTTTGCGGTTGT
GGACCCCGAGCATGCAGCCCTCACGCTGCATCCGTTGGCGCTGGCGGGGT
ATTGGGGCGTGATGTTTAATGCGCTGAACCTCTTGCCTATGGGTCGCTTG
GATGGGGCACGTATGGTGGAATCGCTTCTGGGAAAGCGCACGGCGTCGGC
AGCCTCGACTTTTACGTTTTGGGGGACCATTGCCGCGGGTATTTGGCAGA
ATCGGTTGGACCTGTTTTTTGCAGGAATCGTAGTGCGCTTGTTTTGGTAT
CGCAAGGCCGTGCCGTGTCTAGATGAGGTGGAGGAAGTGAGTGGAGACAG
GTATTTCCTGGGCGTGGCGGGATTGATATTGATGCTGGGCGCCTTGATAC
CGGCGACATCGATGTTCGCGGGGGATAGTACGTACCTGTTGAATAATCTT
TAG
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Synonyms
Publications