jgi.p|Nanoce1779_2|75285, mRNA_5909 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|75285
Unique NamemRNA_5909
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_14:24613..25740 -

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Properties
Property NameValue
TranscriptId75371
TrackFilteredModels2
ProteinId75285
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:24613..25740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75285gene_5909Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|75285mRNA_5909-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5909CDS_5909Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5909 ID=mRNA_5909|Name=jgi.p|Nanoce1779_2|75285|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
TGTTTCCCCCGGGGCCTGCTGACGCTGGTCTGTGTGGTGCGTGGAATGTG
GAGGGGAGTGGGGGTGGCGGTGATGGTGGTGGTGGTGCTGCTGCTGCTGG
TGGAGCTGGCTGGAAAGATGACGAATGAGGCGGGCCGTGCTTGACGAGGG
AGGGAGGGGGGAGTACTGTTTCAGTCTTCCCCCCCCCTCCCTTCCCTTCC
CCTCCCAAAAAGCCGCAGACGCCCTCTCCTCCTCCTTCCTTGCTGGCTAC
ACTGAATGTCCATCTGCGAGTCAAGGTAGGGAAAATGGGGCCTGCTCCTG
CATTTGCTACAGCTCCTGCTCCCGTTCTTGCCTTGGCTCCTGTGCCTGCT
TCTCTCCCTGCTTGTGCGCCCTTGTCGTTGCCGGCACTGCCGATGCTGCT
CTCACTGTCCGTGGTGCTGGTGCTTGTGGTGCTCGCGTTCCCACCGGCTC
CCCCCCTCCCTCCTCCCCGTTCGCCGATGCATGGGGGGGAGGGAGAAGGG
GAGGAGGAAAGTTTGTCGCTGTTGCCGCTTTTGCTGCCCTTGATGGAGGC
GGGCACCGTCTCGTCCACCGAGGAGGTACGCCGACCTCCGTTCCACATCC
TACTGCTCTGGTGCTATTGGCACTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTACAGTTACTGCTTCTGCTGCTGGTGACGTGCTTG
GGGTGGCAGCTTTTATCACGTGATTCAGTGCTGGCGATGGGTTAGGTGAG
GAGCACACTTCCCCGACGGCCTGTGCACCCCCCTCGGAAAAACGAAATGA
AATACCGACGTGTCTACAAAAAGGACGGGGATCGACGCGGTGGTGACAGG
GTGAATGTAGCGTTTGTATTTGTGTACGTGTGGGCGAGGATCGAGAGGGG
CTTTCCCAGAGGCACGGGTCTATAGGAGACGGCGTCCGCCACTGCCGTGC
CGAAGGGCCATGATAGGTTGGTGGCAGCAAACTCCGTTGATCTCTGATTC
AGAGGCAAGCAATGCACGGGCGACAAGCGCCAGACACCCGGCAAGCCTAT
GACGAGGTGTGTATATGTAGTGGTGGTGTGTGCGTGAGCGGATAAAGACA
ACGAAAAATGACGATAGCTATGGCGTGA
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protein sequence of jgi.p|Nanoce1779_2|75285

>mRNA_5909-protein ID=mRNA_5909-protein|Name=jgi.p|Nanoce1779_2|75285|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MRRAVLDEGGRGEYCFSLPPPSLPFPSQKAADALSSSFLAGYTECPSASQ
GRENGACSCICYSSCSRSCLGSCACFSPCLCALVVAGTADAALTVRGAGA
CGARVPTGSPPPSSPFADAWGGGRRGGGKFVAVAAFAALDGGGHRLVHRG
GTPTSVPHPTALVLLALLLLLLLLLLLLLLLQLLLLLLVTCLGWQLLSRD
SVLAMG*
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mRNA from alignment at scaffold_14:24613..25740-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5909 ID=mRNA_5909|Name=jgi.p|Nanoce1779_2|75285|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp|location=Sequence derived from alignment at scaffold_14:24613..25740- (Nannochloropsis oceanica)
TGTTTCCCCCGGGGCCTGCTGACGCTGGTCTGTGTGGTGCGTGGAATGTG
GAGGGGAGTGGGGGTGGCGGTGATGGTGGTGGTGGTGCTGCTGCTGCTGG
TGGAGCTGGCTGGAAAGATGACGAATGAGGCGGGCCGTGCTTGACGAGGG
AGGGAGGGGGGAGTACTGTTTCAGTCTTCCCCCCCCCTCCCTTCCCTTCC
CCTCCCAAAAAGCCGCAGACGCCCTCTCCTCCTCCTTCCTTGCTGGCTAC
ACTGAATGTCCATCTGCGAGTCAAGGTAGGGAAAATGGGGCCTGCTCCTG
CATTTGCTACAGCTCCTGCTCCCGTTCTTGCCTTGGCTCCTGTGCCTGCT
TCTCTCCCTGCTTGTGCGCCCTTGTCGTTGCCGGCACTGCCGATGCTGCT
CTCACTGTCCGTGGTGCTGGTGCTTGTGGTGCTCGCGTTCCCACCGGCTC
CCCCCCTCCCTCCTCCCCGTTCGCCGATGCATGGGGGGGAGGGAGAAGGG
GAGGAGGAAAGTTTGTCGCTGTTGCCGCTTTTGCTGCCCTTGATGGAGGC
GGGCACCGTCTCGTCCACCGAGGAGGTACGCCGACCTCCGTTCCACATCC
TACTGCTCTGGTGCTATTGGCACTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTACAGTTACTGCTTCTGCTGCTGGTGACGTGCTTG
GGGTGGCAGCTTTTATCACGTGATTCAGTGCTGGCGATGGGTTAGGTGAG
GAGCACACTTCCCCGACGGCCTGTGCACCCCCCTCGGAAAAACGAAATGA
AATACCGACGTGTCTACAAAAAGGACGGGGATCGACGCGGTGGTGACAGG
GTGAATGTAGCGTTTGTATTTGTGTACGTGTGGGCGAGGATCGAGAGGGG
CTTTCCCAGAGGCACGGGTCTATAGGAGACGGCGTCCGCCACTGCCGTGC
CGAAGGGCCATGATAGGTTGGTGGCAGCAAACTCCGTTGATCTCTGATTC
AGAGGCAAGCAATGCACGGGCGACAAGCGCCAGACACCCGGCAAGCCTAT
GACGAGGTGTGTATATGTAGTGGTGGTGTGTGCGTGAGCGGATAAAGACA
ACGAAAAATGACGATAGCTATGGCGTGA
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Coding sequence (CDS) from alignment at scaffold_14:24613..25740-

>mRNA_5909 ID=mRNA_5909|Name=jgi.p|Nanoce1779_2|75285|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_14:24613..25740- (Nannochloropsis oceanica)
ATGAGGCGGGCCGTGCTTGACGAGGGAGGGAGGGGGGAGTACTGTTTCAG
TCTTCCCCCCCCCTCCCTTCCCTTCCCCTCCCAAAAAGCCGCAGACGCCC
TCTCCTCCTCCTTCCTTGCTGGCTACACTGAATGTCCATCTGCGAGTCAA
GGTAGGGAAAATGGGGCCTGCTCCTGCATTTGCTACAGCTCCTGCTCCCG
TTCTTGCCTTGGCTCCTGTGCCTGCTTCTCTCCCTGCTTGTGCGCCCTTG
TCGTTGCCGGCACTGCCGATGCTGCTCTCACTGTCCGTGGTGCTGGTGCT
TGTGGTGCTCGCGTTCCCACCGGCTCCCCCCCTCCCTCCTCCCCGTTCGC
CGATGCATGGGGGGGAGGGAGAAGGGGAGGAGGAAAGTTTGTCGCTGTTG
CCGCTTTTGCTGCCCTTGATGGAGGCGGGCACCGTCTCGTCCACCGAGGA
GGTACGCCGACCTCCGTTCCACATCCTACTGCTCTGGTGCTATTGGCACT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACAGTTAC
TGCTTCTGCTGCTGGTGACGTGCTTGGGGTGGCAGCTTTTATCACGTGAT
TCAGTGCTGGCGATGGGTTAG
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Synonyms
Publications