jgi.p|Nanoce1779_2|593675, mRNA_6079 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593675
Unique Name	mRNA_6079
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2355
Alignment location	scaffold_14:466825..469179 -

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Properties


Property Name	Value
TranscriptId	593761
Track	FilteredModels2
ProteinId	593675

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:466825..469179 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593675	gene_6079	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593675	mRNA_6079-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6079	CDS_6079	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:466825..469179-
coding sequence from alignment at scaffold_14:466825..469179-

mRNA sequence

>mRNA_6079 ID=mRNA_6079|Name=jgi.p|Nanoce1779_2|593675|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp
ACAGCACTCGCCTCACTCGTGCACGTTGTGCCTCAGCCAAACACTACGAC
ATCACTGCTGCCTGTTGCCAAGGCCCATGACATCGTTCTACGCGGATGGG
CCTGCTCGCCCCTCCTCACCCCTGCCTCCACCACCCACGATCTGGGAAGA
CATGCTAGTCACAAGCTCACTTCAAGGGCACCTGATCGAACTCTTGTACA
CCAACGAAGTGGCCGGCCTGGGTGCTCTGAGCAGGCGCTGCAAGGCGTCG
TTCTTGGCGCCAAGCCTCCTTCGATCTTCGATTCAAGCCACGGGCCCTTC
GGATGCCACCCGCTTCCAGTTTTGGAAAAAGGCCTTGCATGTACCCGAGG
TGCAACACCAGCTTTTGTTCAGCCGTGACGCAGAATGTGACTTAGAAGAA
GACAAAGGAGACAGGGAACTGCTCGACAAGGCGGGATTCGAGGTCTTCCA
GAGCGTGCTCTTTTCCTCCGCCAGGGGGTGCGCAAATGGCGCAGGCGAGG
ACGCGTTGAAAGAGGTGGGGGGCAAGGGAAAAGATGCAGCGGACGAAGAG
TCCCTTAATTCTTTCTCCGACGGCTGGGCCAAGCCAGAACCACAGCCACA
AGAGCAGCAGCAGCAGCAGCGGTACAGTGGCAAGCGCATGCTCGCCCAAG
ATGGGCAGGAAGGGGAGATCTTACGGGATGTTACGCGGACATTTCCGAAA
GAGCCTCTCTTCCATGACTCCGCAGGGGTCGGGCAGAATCTTTTGGCTAA
CGTGCTTAAGGCCTGCTTATCTTTCCATGACGACACAGGGTAAGTACGTG
AGAGGGGTCTCTGACTGTCTGCGGGGGGAGCGACACAGATGTGATGCGGC
CCACTGATCTGTATAAATATCTATTTATAAAAATGTAACCACACAGCTAC
ATGCAAGGGATGAATTTTATTTGTGCGTCTTTTCTCTTTGCCTTGCGTCG
GCGCTTGCTTCCTCCCTCGCCCTTCAACCATTACCACCCGCACAGCCATC
GAGCACCCGTGCTCCGGTGCTGTGTCACCAGTAGTGACATTAATCGCAGT
ATGTACCCCCTAACAGAATCACCAATAGCTGTTTCAGGAGGAGATAAGGG
AGGAGGAGGGGAAGGAACAGCAGTCTGTAAGAGCAGCTGTGGCGGCCTGC
ACTCGTCCTCCTTCCCTTCTTACCCCCCGCCGGACGGCAGCGGCAGCCTC
AGAAGCGAAAACGACGGATACCTTTCCCACCACCATCATCACCACTACAA
CAACCACCAGCAACAGCAGCAGCCGCTTGACTCGCAAGGTCCTTATTCTC
CTTCTAACACCACGGATGAGGAAGACGGCTACCATTCCGACCATTCCACA
CAAACCCAAGGCTCAGAGTGCTTCTCTCCCCCTCCTGCCTCCTTCTATCA
ACGACAGCGCTCGATACCTGTTGATGCTGCTGTCGTACCCTCTCCCCAAC
AACAGGAGCAGCAACATGGAGCTGCCACCAACTCAAATCCCACCAACAGC
AGCAGCAGCAGCAGCAGTACCACCACGATCCCAAATCCCGAAAAAAGAGC
GCTTGCCAAAAGGTACGGCTTCTTGTGGGAATGCTCCGAGGAGCACATGC
ACGTTGCCAGTGAGGTATTTTGGATGATGACTGCCGTCATGTCCTCCTCA
TCCGGTCTGTCTATGCGCCTGTTGTGGCACCCTGACGTGCCTCACATGAA
ACTTCGTGTCTACCAGTTCGATCGATTGTTGTCCGAGCATCTGCCAAGGC
TACATGTGCATTTTAAGTATATTTGTTTGGCGCCTGATATTTTGGTGACG
CAGTGGCATATGACCCTGCTGGCGTATTGCCTACCTTTGCGCGTGTTAAC
CCGTGTATGGGACGTCGTGTTTCAAGATGGGTGGAAAGCGCTTTTCCGAA
TCTCACTTGCGCTGCTTCAGGCGGTGGAGGAGGATTTGTTGGTGTTGAAC
CTAGAAGAGTCCGGGCGTTTTTTGAGGCAATGGACTTCGAAGCGACATCC
GCTATGGAGAAATGCTGAGCTGCTGTTGAGGGCAGCAAGAAGATGGAAGG
TGACTAGGACGACGCTGACGCAATTGCAGGAAGAGTTTGCCTTGACTCTG
CTGAAAGAGCAGTTAAAAGCTGTTGCTGCAGGTGGTGGTGATGGAAATAG
TGGGAAGATTACGGGTCTGACGGGAGAGTGGTTGAGTCGGTACGGGCCTC
CGGGAGAAGAAGGGGGGGAAGGCTGCTGCTTGCTGAAGGGGCCGGAGCTG
GAAGGGCTGCAAAGGGACATTGAATTGATTGAAGGGCCTGTAGCTAGGGA
TTTTGCGCATTATCGTGTGAAGATTGAGGAGGCGAGCGTGGGGTGTGAGC
TGGCG

protein sequence of jgi.p|Nanoce1779_2|593675

>mRNA_6079-protein ID=mRNA_6079-protein|Name=jgi.p|Nanoce1779_2|593675|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MTSFYADGPARPSSPLPPPPTIWEDMLVTSSLQGHLIELLYTNEVAGLGA
LSRRCKASFLAPSLLRSSIQATGPSDATRFQFWKKALHVPEVQHQLLFSR
DAECDLEEDKGDRELLDKAGFEVFQSVLFSSARGCANGAGEDALKEVGGK
GKDAADEESLNSFSDGWAKPEPQPQEQQQQQRYSGKRMLAQDGQEGEILR
DVTRTFPKEPLFHDSAGVGQNLLANVLKACLSFHDDTG*

mRNA from alignment at scaffold_14:466825..469179-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6079 ID=mRNA_6079|Name=jgi.p|Nanoce1779_2|593675|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at scaffold_14:466825..469179- (Nannochloropsis oceanica)
ACAGCACTCGCCTCACTCGTGCACGTTGTGCCTCAGCCAAACACTACGAC
ATCACTGCTGCCTGTTGCCAAGGCCCATGACATCGTTCTACGCGGATGGG
CCTGCTCGCCCCTCCTCACCCCTGCCTCCACCACCCACGATCTGGGAAGA
CATGCTAGTCACAAGCTCACTTCAAGGGCACCTGATCGAACTCTTGTACA
CCAACGAAGTGGCCGGCCTGGGTGCTCTGAGCAGGCGCTGCAAGGCGTCG
TTCTTGGCGCCAAGCCTCCTTCGATCTTCGATTCAAGCCACGGGCCCTTC
GGATGCCACCCGCTTCCAGTTTTGGAAAAAGGCCTTGCATGTACCCGAGG
TGCAACACCAGCTTTTGTTCAGCCGTGACGCAGAATGTGACTTAGAAGAA
GACAAAGGAGACAGGGAACTGCTCGACAAGGCGGGATTCGAGGTCTTCCA
GAGCGTGCTCTTTTCCTCCGCCAGGGGGTGCGCAAATGGCGCAGGCGAGG
ACGCGTTGAAAGAGGTGGGGGGCAAGGGAAAAGATGCAGCGGACGAAGAG
TCCCTTAATTCTTTCTCCGACGGCTGGGCCAAGCCAGAACCACAGCCACA
AGAGCAGCAGCAGCAGCAGCGGTACAGTGGCAAGCGCATGCTCGCCCAAG
ATGGGCAGGAAGGGGAGATCTTACGGGATGTTACGCGGACATTTCCGAAA
GAGCCTCTCTTCCATGACTCCGCAGGGGTCGGGCAGAATCTTTTGGCTAA
CGTGCTTAAGGCCTGCTTATCTTTCCATGACGACACAGGGTAAGTACGTG
AGAGGGGTCTCTGACTGTCTGCGGGGGGAGCGACACAGATGTGATGCGGC
CCACTGATCTGTATAAATATCTATTTATAAAAATGTAACCACACAGCTAC
ATGCAAGGGATGAATTTTATTTGTGCGTCTTTTCTCTTTGCCTTGCGTCG
GCGCTTGCTTCCTCCCTCGCCCTTCAACCATTACCACCCGCACAGCCATC
GAGCACCCGTGCTCCGGTGCTGTGTCACCAGTAGTGACATTAATCGCAGT
ATGTACCCCCTAACAGAATCACCAATAGCTGTTTCAGGAGGAGATAAGGG
AGGAGGAGGGGAAGGAACAGCAGTCTGTAAGAGCAGCTGTGGCGGCCTGC
ACTCGTCCTCCTTCCCTTCTTACCCCCCGCCGGACGGCAGCGGCAGCCTC
AGAAGCGAAAACGACGGATACCTTTCCCACCACCATCATCACCACTACAA
CAACCACCAGCAACAGCAGCAGCCGCTTGACTCGCAAGGTCCTTATTCTC
CTTCTAACACCACGGATGAGGAAGACGGCTACCATTCCGACCATTCCACA
CAAACCCAAGGCTCAGAGTGCTTCTCTCCCCCTCCTGCCTCCTTCTATCA
ACGACAGCGCTCGATACCTGTTGATGCTGCTGTCGTACCCTCTCCCCAAC
AACAGGAGCAGCAACATGGAGCTGCCACCAACTCAAATCCCACCAACAGC
AGCAGCAGCAGCAGCAGTACCACCACGATCCCAAATCCCGAAAAAAGAGC
GCTTGCCAAAAGGTACGGCTTCTTGTGGGAATGCTCCGAGGAGCACATGC
ACGTTGCCAGTGAGGTATTTTGGATGATGACTGCCGTCATGTCCTCCTCA
TCCGGTCTGTCTATGCGCCTGTTGTGGCACCCTGACGTGCCTCACATGAA
ACTTCGTGTCTACCAGTTCGATCGATTGTTGTCCGAGCATCTGCCAAGGC
TACATGTGCATTTTAAGTATATTTGTTTGGCGCCTGATATTTTGGTGACG
CAGTGGCATATGACCCTGCTGGCGTATTGCCTACCTTTGCGCGTGTTAAC
CCGTGTATGGGACGTCGTGTTTCAAGATGGGTGGAAAGCGCTTTTCCGAA
TCTCACTTGCGCTGCTTCAGGCGGTGGAGGAGGATTTGTTGGTGTTGAAC
CTAGAAGAGTCCGGGCGTTTTTTGAGGCAATGGACTTCGAAGCGACATCC
GCTATGGAGAAATGCTGAGCTGCTGTTGAGGGCAGCAAGAAGATGGAAGG
TGACTAGGACGACGCTGACGCAATTGCAGGAAGAGTTTGCCTTGACTCTG
CTGAAAGAGCAGTTAAAAGCTGTTGCTGCAGGTGGTGGTGATGGAAATAG
TGGGAAGATTACGGGTCTGACGGGAGAGTGGTTGAGTCGGTACGGGCCTC
CGGGAGAAGAAGGGGGGGAAGGCTGCTGCTTGCTGAAGGGGCCGGAGCTG
GAAGGGCTGCAAAGGGACATTGAATTGATTGAAGGGCCTGTAGCTAGGGA
TTTTGCGCATTATCGTGTGAAGATTGAGGAGGCGAGCGTGGGGTGTGAGC
TGGCG

Coding sequence (CDS) from alignment at scaffold_14:466825..469179-

>mRNA_6079 ID=mRNA_6079|Name=jgi.p|Nanoce1779_2|593675|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_14:466825..469179- (Nannochloropsis oceanica)
ATGACATCGTTCTACGCGGATGGGCCTGCTCGCCCCTCCTCACCCCTGCC
TCCACCACCCACGATCTGGGAAGACATGCTAGTCACAAGCTCACTTCAAG
GGCACCTGATCGAACTCTTGTACACCAACGAAGTGGCCGGCCTGGGTGCT
CTGAGCAGGCGCTGCAAGGCGTCGTTCTTGGCGCCAAGCCTCCTTCGATC
TTCGATTCAAGCCACGGGCCCTTCGGATGCCACCCGCTTCCAGTTTTGGA
AAAAGGCCTTGCATGTACCCGAGGTGCAACACCAGCTTTTGTTCAGCCGT
GACGCAGAATGTGACTTAGAAGAAGACAAAGGAGACAGGGAACTGCTCGA
CAAGGCGGGATTCGAGGTCTTCCAGAGCGTGCTCTTTTCCTCCGCCAGGG
GGTGCGCAAATGGCGCAGGCGAGGACGCGTTGAAAGAGGTGGGGGGCAAG
GGAAAAGATGCAGCGGACGAAGAGTCCCTTAATTCTTTCTCCGACGGCTG
GGCCAAGCCAGAACCACAGCCACAAGAGCAGCAGCAGCAGCAGCGGTACA
GTGGCAAGCGCATGCTCGCCCAAGATGGGCAGGAAGGGGAGATCTTACGG
GATGTTACGCGGACATTTCCGAAAGAGCCTCTCTTCCATGACTCCGCAGG
GGTCGGGCAGAATCTTTTGGCTAACGTGCTTAAGGCCTGCTTATCTTTCC
ATGACGACACAGGGTAA

Synonyms

Publications