jgi.p|Nanoce1779_2|593739, mRNA_6098 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593739
Unique NamemRNA_6098
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length775
Alignment locationscaffold_14:510591..511774 -

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Properties
Property NameValue
TranscriptId593825
TrackFilteredModels2
ProteinId593739
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:510591..511774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593739gene_6098Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593739mRNA_6098-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6098CDS_6098Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6098 ID=mRNA_6098|Name=jgi.p|Nanoce1779_2|593739|organism=Nannochloropsis oceanica|type=mRNA|length=775bp
CTTCGTCACTTCTCCCCGACTCACAGTAAAGATGTCTCTGATAATCACCC
CCGAGTTTCAGCATATCTTGCGTATCCTCAACACCAATGTGGACGGGACC
CGCTCGGTACAGTATGCCCTAACCTCCATCAAGGGTGTGGGCCGACGGTT
CGCCAACGTGGTATGCAAGAAGGCGGAAATCGACTTGAACCAGCGAGCGG
GGGAATTGACACAGGAGAAGTTGGAGGAGGTCATTGCCATCGTCAGCAAC
CCTAAAGCATTCAAGATTCCCGACTGGTTCCTGAACAGGCAACGTGACTG
GAAGACGAACAAGCCTTCCCAGGCGACATCCAACGTGGTCGACACCAAGC
TCCGCGAGGACTTGGAGCGCCTTAAGAAGATCCGCTCCCACCGTGGTATT
CGCCACTACTGGGGCGTGCGCGTGCGTGGGCAACACACCAAGACCACGGG
TCGCCGCGGCAAGACCGTCGGCCCCGCGGGGAAGAAGTAAGGAATGGATT
CACAGGAGAGAAGATAGTAGATACAGCAAGCGTTGCAATTGCGACGGGCG
CATGGTCCCGGTAGTTGTGGCGTATGGTTGTGAGGGAGGAGGGGTTCTCA
TGCATGGCTTGTGGTGGAGGGGAGGGTGGGGGGTGGGGTGAGAGAGGCTT
TGGCAAGGGCCCAAGAAATGACGGGAACAGAATAAGCAAGGTACTTCAAG
GTACTTACAGCCGACCGGCCACTTGACGGGATCGTGCGATTTATTTATCA
CCAATTTTGTCCAGCTGAGCCTATG
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protein sequence of jgi.p|Nanoce1779_2|593739

>mRNA_6098-protein ID=mRNA_6098-protein|Name=jgi.p|Nanoce1779_2|593739|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MSLIITPEFQHILRILNTNVDGTRSVQYALTSIKGVGRRFANVVCKKAEI
DLNQRAGELTQEKLEEVIAIVSNPKAFKIPDWFLNRQRDWKTNKPSQATS
NVVDTKLREDLERLKKIRSHRGIRHYWGVRVRGQHTKTTGRRGKTVGPAG
KK*
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mRNA from alignment at scaffold_14:510591..511774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6098 ID=mRNA_6098|Name=jgi.p|Nanoce1779_2|593739|organism=Nannochloropsis oceanica|type=mRNA|length=1184bp|location=Sequence derived from alignment at scaffold_14:510591..511774- (Nannochloropsis oceanica)
CTTCGTCACTTCTCCCCGACTCACAGTAAAGATGGTACGTTTAGGAGTCT
GTCGGCTAAAAGTGTGATGCAACGAGAGAGATGTTATTAGCTGTGGAGAA
AAATGCGGGGGAGGATTCATGTGGATGGTCACAGGAGGGGATGCGGCGTG
TCGTGGATGATGGTGCTGGGGCTGCGGCCGCGCATGGATGAGTGTGCATG
TGTGCATGGTATGATAATAAGGGTTAGGATGCGTGTAGGCTGAGATTTCC
ACTTCTCTGCACTTATTGGGAAAAGCAAGAGCATGTATATTGTGTGGGTA
TGGGGAGGCCGAAGAAGCTCCTGCGCCATACGGACTTCAGCTCAGCGGCC
CTGTCTCATGTCTTCCAACCCCCCATTGAAGGTCACACCATCTCACACAC
CATCCCTTCTTCCTTTTACTTCTCATTTCCTTGGCATGAACAGTCTCTGA
TAATCACCCCCGAGTTTCAGCATATCTTGCGTATCCTCAACACCAATGTG
GACGGGACCCGCTCGGTACAGTATGCCCTAACCTCCATCAAGGGTGTGGG
CCGACGGTTCGCCAACGTGGTATGCAAGAAGGCGGAAATCGACTTGAACC
AGCGAGCGGGGGAATTGACACAGGAGAAGTTGGAGGAGGTCATTGCCATC
GTCAGCAACCCTAAAGCATTCAAGATTCCCGACTGGTTCCTGAACAGGCA
ACGTGACTGGAAGACGAACAAGCCTTCCCAGGCGACATCCAACGTGGTCG
ACACCAAGCTCCGCGAGGACTTGGAGCGCCTTAAGAAGATCCGCTCCCAC
CGTGGTATTCGCCACTACTGGGGCGTGCGCGTGCGTGGGCAACACACCAA
GACCACGGGTCGCCGCGGCAAGACCGTCGGCCCCGCGGGGAAGAAGTAAG
GAATGGATTCACAGGAGAGAAGATAGTAGATACAGCAAGCGTTGCAATTG
CGACGGGCGCATGGTCCCGGTAGTTGTGGCGTATGGTTGTGAGGGAGGAG
GGGTTCTCATGCATGGCTTGTGGTGGAGGGGAGGGTGGGGGGTGGGGTGA
GAGAGGCTTTGGCAAGGGCCCAAGAAATGACGGGAACAGAATAAGCAAGG
TACTTCAAGGTACTTACAGCCGACCGGCCACTTGACGGGATCGTGCGATT
TATTTATCACCAATTTTGTCCAGCTGAGCCTATG
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Coding sequence (CDS) from alignment at scaffold_14:510591..511774-

>mRNA_6098 ID=mRNA_6098|Name=jgi.p|Nanoce1779_2|593739|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_14:510591..511774- (Nannochloropsis oceanica)
TCTCTGATAATCACCCCCGAGTTTCAGCATATCTTGCGTATCCTCAACAC
CAATGTGGACGGGACCCGCTCGGTACAGTATGCCCTAACCTCCATCAAGG
GTGTGGGCCGACGGTTCGCCAACGTGGTATGCAAGAAGGCGGAAATCGAC
TTGAACCAGCGAGCGGGGGAATTGACACAGGAGAAGTTGGAGGAGGTCAT
TGCCATCGTCAGCAACCCTAAAGCATTCAAGATTCCCGACTGGTTCCTGA
ACAGGCAACGTGACTGGAAGACGAACAAGCCTTCCCAGGCGACATCCAAC
GTGGTCGACACCAAGCTCCGCGAGGACTTGGAGCGCCTTAAGAAGATCCG
CTCCCACCGTGGTATTCGCCACTACTGGGGCGTGCGCGTGCGTGGGCAAC
ACACCAAGACCACGGGTCGCCGCGGCAAGACCGTCGGCCCCGCGGGGAAG
AAGTAAATGTCTCTGATAATCACCCCCGAGTTTCAGCATATCTTGCGTAT
CCTCAACACCAATGTGGACGGGACCCGCTCGGTACAGTATGCCCTAACCT
CCATCAAGGGTGTGGGCCGACGGTTCGCCAACGTGGTATGCAAGAAGGCG
GAAATCGACTTGAACCAGCGAGCGGGGGAATTGACACAGGAGAAGTTGGA
GGAGGTCATTGCCATCGTCAGCAACCCTAAAGCATTCAAGATTCCCGACT
GGTTCCTGAACAGGCAACGTGACTGGAAGACGAACAAGCCTTCCCAGGCG
ACATCCAACGTGGTCGACACCAAGCTCCGCGAGGACTTGGAGCGCCTTAA
GAAGATCCGCTCCCACCGTGGTATTCGCCACTACTGGGGCGTGCGCGTGC
GTGGGCAACACACCAAGACCACGGGTCGCCGCGGCAAGACCGTCGGCCCC
GCGGGGAAGAAGTAAATG
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Synonyms
Publications