jgi.p|Nanoce1779_2|593823, mRNA_6123 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593823
Unique NamemRNA_6123
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length330
Alignment locationscaffold_14:570815..571144 -

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Properties
Property NameValue
TranscriptId593909
TrackFilteredModels2
ProteinId593823
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:570815..571144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593823gene_6123Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593823mRNA_6123-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6123CDS_6123Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6123 ID=mRNA_6123|Name=jgi.p|Nanoce1779_2|593823|organism=Nannochloropsis oceanica|type=mRNA|length=330bp
ACTGTGGGAAGGCATAGGAGGCTGGAAAGGAGTTGGCAATATGAACGAAT
GATGCTGAAATGATCTCAATTAAATGAAAATGATATTCGCACTTGCGATT
TTGTACTTGGTTATATTGTTGCCGGTCAAATTTGTTCACACTTTGCTGTT
TGGTAGGAATCGAATCTCCACTCCAGTTGGCTGTAGTAACGCCAACAGCA
AACTGCTACGCCGTGTACGTGCCCCTTGTCATCCCCGGTTTGGGGATCCC
AAACTCACTCACGAAATAATTAATGTCATATCAAGATGAATATTGTCCTG
CGAAGGAATTTTACTTCATTTGGCTGTGGG
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protein sequence of jgi.p|Nanoce1779_2|593823

>mRNA_6123-protein ID=mRNA_6123-protein|Name=jgi.p|Nanoce1779_2|593823|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MKMIFALAILYLVILLPVKFVHTLLFGRNRISTPVGCSNANSKLLRRVRA
PCHPRFGDPKLTHEIINVISR*
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mRNA from alignment at scaffold_14:570815..571144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6123 ID=mRNA_6123|Name=jgi.p|Nanoce1779_2|593823|organism=Nannochloropsis oceanica|type=mRNA|length=330bp|location=Sequence derived from alignment at scaffold_14:570815..571144- (Nannochloropsis oceanica)
ACTGTGGGAAGGCATAGGAGGCTGGAAAGGAGTTGGCAATATGAACGAAT
GATGCTGAAATGATCTCAATTAAATGAAAATGATATTCGCACTTGCGATT
TTGTACTTGGTTATATTGTTGCCGGTCAAATTTGTTCACACTTTGCTGTT
TGGTAGGAATCGAATCTCCACTCCAGTTGGCTGTAGTAACGCCAACAGCA
AACTGCTACGCCGTGTACGTGCCCCTTGTCATCCCCGGTTTGGGGATCCC
AAACTCACTCACGAAATAATTAATGTCATATCAAGATGAATATTGTCCTG
CGAAGGAATTTTACTTCATTTGGCTGTGGG
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Coding sequence (CDS) from alignment at scaffold_14:570815..571144-

>mRNA_6123 ID=mRNA_6123|Name=jgi.p|Nanoce1779_2|593823|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_14:570815..571144- (Nannochloropsis oceanica)
ATGAAAATGATATTCGCACTTGCGATTTTGTACTTGGTTATATTGTTGCC
GGTCAAATTTGTTCACACTTTGCTGTTTGGTAGGAATCGAATCTCCACTC
CAGTTGGCTGTAGTAACGCCAACAGCAAACTGCTACGCCGTGTACGTGCC
CCTTGTCATCCCCGGTTTGGGGATCCCAAACTCACTCACGAAATAATTAA
TGTCATATCAAGATGA
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Synonyms
Publications