jgi.p|Nanoce1779_2|593993, mRNA_6166 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593993
Unique NamemRNA_6166
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length818
Alignment locationscaffold_14:680519..681802 -

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Properties
Property NameValue
TranscriptId594079
TrackFilteredModels2
ProteinId593993
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:680519..681802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593993gene_6166Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593993mRNA_6166-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6166CDS_6166Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6166 ID=mRNA_6166|Name=jgi.p|Nanoce1779_2|593993|organism=Nannochloropsis oceanica|type=mRNA|length=818bp
ACAGGGACACTCCGGGAAGGATGCCTCCCCAGAACGACGCTGCTCTTGGA
GGCGGTTTTTTTCGCAACCGCTTCACCCGAAAGAACTCCACTTCCTCCCT
CATCATCGATGACACGCCGGCCACCAGCACTGAGTCCGTGGCGGCAGCAG
AAGCAACAGTAGCAGCGACAGCAGCCGCCGCCGCCGGCGGTAAGACCTAC
ACATGGGAGGAAGTGGCGGAGCACAACACTGAGAAGAGCCTGTGGGTGAC
CGTGCGAGGAAAGGTGTATGACATCAGCAGCTGGGTGAACAACCACCCGG
GAGGGAAGGAGATTCTGTTGTTGGCGGCGGGCAGGGATATCACCTATGCC
TTCGACTCTTACCACCCTTTCACGGAGAAGCCGACGCAGGTAGGGAGGGC
GGGAGAGAGAGAGGGAAAGCGGATGGGATAGATAGTGTGTACGTATGTGG
AAAGATTCGGTCCAGATAGTTTGTTCACCTGAGATAGAATGAGTGAAGTT
GTCACGAGGGAGGAAGGGCAATGGCATTCATCTTGTCCTACCCTCCCTTG
CTCCCTCCCTCTCTCCCTCCCTCCTCCCTCCCTGTCGACAGGTCCTGGGC
AAGTTTGAGATCGGCACTGTGTCCTCCCACGAATTCCCGCAGTACAAACC
CGACACCCGGGGCTTCTACAAGACGCTGTGCACGCGCGTAGGTGACTACT
TTAAGCAGGAGAAGTTGAACCCTAAGGACCCTTTCCCAGGGATATGGCGG
ATGCTCCTGGTGGCGATGGTGGCCGTAGCCTCCTTTATGGTGTGCAACGG
GTGGGTGGGGCTGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|593993

>mRNA_6166-protein ID=mRNA_6166-protein|Name=jgi.p|Nanoce1779_2|593993|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MPPQNDAALGGGFFRNRFTRKNSTSSLIIDDTPATSTESVAAAEATVAAT
AAAAAGGKTYTWEEVAEHNTEKSLWVTVRGKVYDISSWVNNHPGGKEILL
LAAGRDITYAFDSYHPFTEKPTQVGRAGEREGKRMG*
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mRNA from alignment at scaffold_14:680519..681802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6166 ID=mRNA_6166|Name=jgi.p|Nanoce1779_2|593993|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp|location=Sequence derived from alignment at scaffold_14:680519..681802- (Nannochloropsis oceanica)
ACAGGGACACTCCGGGAAGGATGCCTCCCCAGAACGACGCTGCTCTTGGA
GGCGGTGAGTGAAGGAGGGAGGGAGTGAGGGAGGGAACATGAATGAATGA
GTCACCAGGTCGTGGCATGCAGGAAAATAGGACGTTCAGGACGTTCTCTG
CCGCCTTTCAGGACAAACCATGATCATCAGCATCACCATGCACACACATG
CTTGGTGTTTTTTTGTCTTTTCCCATTTCCCTCCATTCTCGTTATCGTGA
AGACTGCCGCCATAGTGGGCGCACGGCATGCAGGCGCGGCGGCGTTCGTT
CTTGACTCTTGTTTCTTTTTCGGTCACCAATCCTGATCATCCCGACTCGA
CGCCTGCTAAATGCCGTCGTACACCAATCATAAGGCCCGTCACTTCTTAT
TCCTGCGTCCCTCTCCCCCTCTTCTTCCCAAAGCACGTCTCTGCCTGTCT
GGCTTCGAGCTTCCCGGCTACTAACTCATCAACGTGTCGACCTCCCCTCC
CTCCCTATCCTCCTTCCCAGGTTTTTTTCGCAACCGCTTCACCCGAAAGA
ACTCCACTTCCTCCCTCATCATCGATGACACGCCGGCCACCAGCACTGAG
TCCGTGGCGGCAGCAGAAGCAACAGTAGCAGCGACAGCAGCCGCCGCCGC
CGGCGGTAAGACCTACACATGGGAGGAAGTGGCGGAGCACAACACTGAGA
AGAGCCTGTGGGTGACCGTGCGAGGAAAGGTGTATGACATCAGCAGCTGG
GTGAACAACCACCCGGGAGGGAAGGAGATTCTGTTGTTGGCGGCGGGCAG
GGATATCACCTATGCCTTCGACTCTTACCACCCTTTCACGGAGAAGCCGA
CGCAGGTAGGGAGGGCGGGAGAGAGAGAGGGAAAGCGGATGGGATAGATA
GTGTGTACGTATGTGGAAAGATTCGGTCCAGATAGTTTGTTCACCTGAGA
TAGAATGAGTGAAGTTGTCACGAGGGAGGAAGGGCAATGGCATTCATCTT
GTCCTACCCTCCCTTGCTCCCTCCCTCTCTCCCTCCCTCCTCCCTCCCTG
TCGACAGGTCCTGGGCAAGTTTGAGATCGGCACTGTGTCCTCCCACGAAT
TCCCGCAGTACAAACCCGACACCCGGGGCTTCTACAAGACGCTGTGCACG
CGCGTAGGTGACTACTTTAAGCAGGAGAAGTTGAACCCTAAGGACCCTTT
CCCAGGGATATGGCGGATGCTCCTGGTGGCGATGGTGGCCGTAGCCTCCT
TTATGGTGTGCAACGGGTGGGTGGGGCTGGAAGG
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Coding sequence (CDS) from alignment at scaffold_14:680519..681802-

>mRNA_6166 ID=mRNA_6166|Name=jgi.p|Nanoce1779_2|593993|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_14:680519..681802- (Nannochloropsis oceanica)
GTTTTTTTCGCAACCGCTTCACCCGAAAGAACTCCACTTCCTCCCTCATC
ATCGATGACACGCCGGCCACCAGCACTGAGTCCGTGGCGGCAGCAGAAGC
AACAGTAGCAGCGACAGCAGCCGCCGCCGCCGGCGGTAAGACCTACACAT
GGGAGGAAGTGGCGGAGCACAACACTGAGAAGAGCCTGTGGGTGACCGTG
CGAGGAAAGGTGTATGACATCAGCAGCTGGGTGAACAACCACCCGGGAGG
GAAGGAGATTCTGTTGTTGGCGGCGGGCAGGGATATCACCTATGCCTTCG
ACTCTTACCACCCTTTCACGGAGAAGCCGACGCAGGTAGGGAGGGCGGGA
GAGAGAGAGGGAAAGCGGATGGGATAGATGCCTCCCCAGAACGACGCTGC
TCTTGGAGGCGGTTTTTTTCGCAACCGCTTCACCCGAAAGAACTCCACTT
CCTCCCTCATCATCGATGACACGCCGGCCACCAGCACTGAGTCCGTGGCG
GCAGCAGAAGCAACAGTAGCAGCGACAGCAGCCGCCGCCGCCGGCGGTAA
GACCTACACATGGGAGGAAGTGGCGGAGCACAACACTGAGAAGAGCCTGT
GGGTGACCGTGCGAGGAAAGGTGTATGACATCAGCAGCTGGGTGAACAAC
CACCCGGGAGGGAAGGAGATTCTGTTGTTGGCGGCGGGCAGGGATATCAC
CTATGCCTTCGACTCTTACCACCCTTTCACGGAGAAGCCGACGCAGGTAG
GGAGGGCGGGAGAGAGAGAGGGAAAGCGGATGGGATAGATGCCTCCCCAG
AACGACGCTGCTCTTGGAGGCG
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Synonyms
Publications