jgi.p|Nanoce1779_2|651027, mRNA_6848 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|651027
Unique Name	mRNA_6848
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2149
Alignment location	scaffold_17:255108..257256 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	651113
Track	FilteredModels2
ProteinId	651027

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:255108..257256 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651027	gene_6848	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651027	mRNA_6848-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6848	CDS_6848	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:255108..257256+
coding sequence from alignment at scaffold_17:255108..257256+

mRNA sequence

>mRNA_6848 ID=mRNA_6848|Name=jgi.p|Nanoce1779_2|651027|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp
ATGTGGAAGAAAAGCGATGAGCTTGTGTGACGATAGGATAACGGTCAAGA
AGGAGGCATTACCAAGTGCGAGCCCTCTCAGGCTTGATTTCTCGCCGGGG
CCCGGGTGCGTCTCTCGCGGAAGAAAGAAGAAGGAAGAACGGTCGCTGGC
TTTGTCACTGCATGCTGCATCCACGTCCTTTTCCACCGTGCCCCCCAGCA
GCATCACCACTTGTAGAGGCGAAAGCGTTCTCTGCTGGCAGTAGGCGGAA
GGGTTGGATCGTTGGGCTGCAAGTGTTGCCCAAACCTCGCCCTTCGCAGG
CCCTCCTTCTCTGCATGACCCCTGCCTCTGATTCCCCACATCCACACACA
CCACAGCCACACAGGCAAGGCATCACGAGCAACGCGCCCAGGCATCAAAG
CAGGCGCGCACTTTACCTAACGGCAGCAACAGCAGCAGCAGAATGGCGGA
CGCGTACGGCAGTGAACAGCAATCTTCAGGCTACGGGGAGACAGGGAATG
GAAGCTCGGCGACCCCCCCTCAACGCGAAGGCGCCGGCACCGGCAACGCC
GGTGGTGCTCAGGGGGAGTTCAACAACCCAAACAAGATATTTGTAGGGGG
GGTGGCTTGGCATACGACCGAGGAGGGCCTGTCGAACTACTTTGGCAAGT
ACGGGGAGCTGGTGGACGTGGTGTTGATGCGGGACAGGAACACGGGCGGG
CCCCGCGGGTTTGGCTTCGTTTCGTTCGCCACGCCAGAGGCCTTGGAGGC
TGCCGTGGCTGAAGCGCATATCTTGGATGGGCGCAATCTAGACGTGAAGA
AGGCGGTGCCTCGGGAGCAGGCCCCCGCGCCAGTTCGTGCCATATGGGGG
GGCACAGGCGCCGGTCCCCAGAAGCAGTTTCAGGATATCAAGAAGGTTTT
TGTGGGTGGGCTATCACCTGAGGTGACTGAGGAGGCTTTCAGGGCATACT
TTGACACATTTGGAGAGATTACTGATGCCGTGGTGATGATGGATAGGACC
ACGGGGCGGAGTCGTGGATTCGGCTTTGTGACCTATGCGGAGGAAGCAGC
GATGAAGAAGGTATTGGCGCAACCACATGAGATGGACGGTAGGCCGATGG
ATGTAAAGAGGGCGGAGCCCAAGATTCCAGATGGGGGTAGGGAAGGTGGG
TATAGAGGAGGGGGAGGAGGAGGGTATGGGGGAGGAAGGGGGGGGGGAGG
GGGCTATGGCGGGTATGGAGGTGGAGGGGGCTATTCTGGAGGGGGATACG
GGGAGGATAGGGGAGGATACATGCCGTACAGTAGAGGAGGGGGGGGATAC
GGAGGAGGAGGAGGGTACCCATCGTATCGAGGAGGGGGGGGGTATTCAGA
TCGGGGAGGACCAGTAGGGTACTCAGGTGGCGGCGGTTACAGCAGCGCGT
CGCGAGGCGGAGGGCGAGGAGGGTACGGTGAATATGCTGGATACGCCGGG
GGAGGTGGGGGAGGGGTGGGGGGTGGATATAGCTCTTATCCTTCGCAGGG
TTACGGTGGCTATCCGTCGTCGGCGCACGCTCCAGGGTACGGTGGCTACC
CCTCGTCCTCCTCTTCCTCCACTGCTCCCTATGCTCATGGCGGGTACAGT
GCGGGCCCTGTTGCTGTTGGTGCTCCGGCGTCGGGGTCGTACAACGGGCA
TGGAGCGCAGGGTTACCACGCTGGAGGAGGAGGAGGAGGAGGAGGAGGGG
GAGAAGGTGGGGCGAGCGGGTACGCGCCGCATCGTGGGCAGCACGCGCAC
CAGGGACGGGTGGAGAGGAGTCACCGCCCTTATTGAGTGGAGAAATAGAG
CCATGGAGGGAGGAGTGGCACGTGTTGGAGGAATCCCTGAGACAGGAGGA
AAAGTAGTAGGGAGGAGTTTGAAACGTGGGAGGGAGGGAGGAGACATAAG
CGAAGGGAGGGCTTTAAGTAAAGAATATATTTTGAGCACTGCTGTCATTG
CTGCTGCATTCAGAGGTAGGGAAGAATGATAAGGAGTAATCAATGGCGGA
AGTCGACGAAGGTTACGATGCATGCATTTTGAACTCACAGAAACGGCGGC
AGCAGCAGCAGCAGCAGCAGAAAGAGGGAAGAGCATGAAGAAGGGAAAGA
AATAATGAGAGGAGGAGGATGAAAGAAGAAAGCTACAAAAAACAAAAAA

protein sequence of jgi.p|Nanoce1779_2|651027

>mRNA_6848-protein ID=mRNA_6848-protein|Name=jgi.p|Nanoce1779_2|651027|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MADAYGSEQQSSGYGETGNGSSATPPQREGAGTGNAGGAQGEFNNPNKIF
VGGVAWHTTEEGLSNYFGKYGELVDVVLMRDRNTGGPRGFGFVSFATPEA
LEAAVAEAHILDGRNLDVKKAVPREQAPAPVRAIWGGTGAGPQKQFQDIK
KVFVGGLSPEVTEEAFRAYFDTFGEITDAVVMMDRTTGRSRGFGFVTYAE
EAAMKKVLAQPHEMDGRPMDVKRAEPKIPDGGREGGYRGGGGGGYGGGRG
GGGGYGGYGGGGGYSGGGYGEDRGGYMPYSRGGGGYGGGGGYPSYRGGGG
YSDRGGPVGYSGGGGYSSASRGGGRGGYGEYAGYAGGGGGGVGGGYSSYP
SQGYGGYPSSAHAPGYGGYPSSSSSSTAPYAHGGYSAGPVAVGAPASGSY
NGHGAQGYHAGGGGGGGGGGEGGASGYAPHRGQHAHQGRVERSHRPY*

mRNA from alignment at scaffold_17:255108..257256+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6848 ID=mRNA_6848|Name=jgi.p|Nanoce1779_2|651027|organism=Nannochloropsis oceanica|type=mRNA|length=2149bp|location=Sequence derived from alignment at scaffold_17:255108..257256+ (Nannochloropsis oceanica)
ATGTGGAAGAAAAGCGATGAGCTTGTGTGACGATAGGATAACGGTCAAGA
AGGAGGCATTACCAAGTGCGAGCCCTCTCAGGCTTGATTTCTCGCCGGGG
CCCGGGTGCGTCTCTCGCGGAAGAAAGAAGAAGGAAGAACGGTCGCTGGC
TTTGTCACTGCATGCTGCATCCACGTCCTTTTCCACCGTGCCCCCCAGCA
GCATCACCACTTGTAGAGGCGAAAGCGTTCTCTGCTGGCAGTAGGCGGAA
GGGTTGGATCGTTGGGCTGCAAGTGTTGCCCAAACCTCGCCCTTCGCAGG
CCCTCCTTCTCTGCATGACCCCTGCCTCTGATTCCCCACATCCACACACA
CCACAGCCACACAGGCAAGGCATCACGAGCAACGCGCCCAGGCATCAAAG
CAGGCGCGCACTTTACCTAACGGCAGCAACAGCAGCAGCAGAATGGCGGA
CGCGTACGGCAGTGAACAGCAATCTTCAGGCTACGGGGAGACAGGGAATG
GAAGCTCGGCGACCCCCCCTCAACGCGAAGGCGCCGGCACCGGCAACGCC
GGTGGTGCTCAGGGGGAGTTCAACAACCCAAACAAGATATTTGTAGGGGG
GGTGGCTTGGCATACGACCGAGGAGGGCCTGTCGAACTACTTTGGCAAGT
ACGGGGAGCTGGTGGACGTGGTGTTGATGCGGGACAGGAACACGGGCGGG
CCCCGCGGGTTTGGCTTCGTTTCGTTCGCCACGCCAGAGGCCTTGGAGGC
TGCCGTGGCTGAAGCGCATATCTTGGATGGGCGCAATCTAGACGTGAAGA
AGGCGGTGCCTCGGGAGCAGGCCCCCGCGCCAGTTCGTGCCATATGGGGG
GGCACAGGCGCCGGTCCCCAGAAGCAGTTTCAGGATATCAAGAAGGTTTT
TGTGGGTGGGCTATCACCTGAGGTGACTGAGGAGGCTTTCAGGGCATACT
TTGACACATTTGGAGAGATTACTGATGCCGTGGTGATGATGGATAGGACC
ACGGGGCGGAGTCGTGGATTCGGCTTTGTGACCTATGCGGAGGAAGCAGC
GATGAAGAAGGTATTGGCGCAACCACATGAGATGGACGGTAGGCCGATGG
ATGTAAAGAGGGCGGAGCCCAAGATTCCAGATGGGGGTAGGGAAGGTGGG
TATAGAGGAGGGGGAGGAGGAGGGTATGGGGGAGGAAGGGGGGGGGGAGG
GGGCTATGGCGGGTATGGAGGTGGAGGGGGCTATTCTGGAGGGGGATACG
GGGAGGATAGGGGAGGATACATGCCGTACAGTAGAGGAGGGGGGGGATAC
GGAGGAGGAGGAGGGTACCCATCGTATCGAGGAGGGGGGGGGTATTCAGA
TCGGGGAGGACCAGTAGGGTACTCAGGTGGCGGCGGTTACAGCAGCGCGT
CGCGAGGCGGAGGGCGAGGAGGGTACGGTGAATATGCTGGATACGCCGGG
GGAGGTGGGGGAGGGGTGGGGGGTGGATATAGCTCTTATCCTTCGCAGGG
TTACGGTGGCTATCCGTCGTCGGCGCACGCTCCAGGGTACGGTGGCTACC
CCTCGTCCTCCTCTTCCTCCACTGCTCCCTATGCTCATGGCGGGTACAGT
GCGGGCCCTGTTGCTGTTGGTGCTCCGGCGTCGGGGTCGTACAACGGGCA
TGGAGCGCAGGGTTACCACGCTGGAGGAGGAGGAGGAGGAGGAGGAGGGG
GAGAAGGTGGGGCGAGCGGGTACGCGCCGCATCGTGGGCAGCACGCGCAC
CAGGGACGGGTGGAGAGGAGTCACCGCCCTTATTGAGTGGAGAAATAGAG
CCATGGAGGGAGGAGTGGCACGTGTTGGAGGAATCCCTGAGACAGGAGGA
AAAGTAGTAGGGAGGAGTTTGAAACGTGGGAGGGAGGGAGGAGACATAAG
CGAAGGGAGGGCTTTAAGTAAAGAATATATTTTGAGCACTGCTGTCATTG
CTGCTGCATTCAGAGGTAGGGAAGAATGATAAGGAGTAATCAATGGCGGA
AGTCGACGAAGGTTACGATGCATGCATTTTGAACTCACAGAAACGGCGGC
AGCAGCAGCAGCAGCAGCAGAAAGAGGGAAGAGCATGAAGAAGGGAAAGA
AATAATGAGAGGAGGAGGATGAAAGAAGAAAGCTACAAAAAACAAAAAA

Coding sequence (CDS) from alignment at scaffold_17:255108..257256+

>mRNA_6848 ID=mRNA_6848|Name=jgi.p|Nanoce1779_2|651027|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_17:255108..257256+ (Nannochloropsis oceanica)
ATGGCGGACGCGTACGGCAGTGAACAGCAATCTTCAGGCTACGGGGAGAC
AGGGAATGGAAGCTCGGCGACCCCCCCTCAACGCGAAGGCGCCGGCACCG
GCAACGCCGGTGGTGCTCAGGGGGAGTTCAACAACCCAAACAAGATATTT
GTAGGGGGGGTGGCTTGGCATACGACCGAGGAGGGCCTGTCGAACTACTT
TGGCAAGTACGGGGAGCTGGTGGACGTGGTGTTGATGCGGGACAGGAACA
CGGGCGGGCCCCGCGGGTTTGGCTTCGTTTCGTTCGCCACGCCAGAGGCC
TTGGAGGCTGCCGTGGCTGAAGCGCATATCTTGGATGGGCGCAATCTAGA
CGTGAAGAAGGCGGTGCCTCGGGAGCAGGCCCCCGCGCCAGTTCGTGCCA
TATGGGGGGGCACAGGCGCCGGTCCCCAGAAGCAGTTTCAGGATATCAAG
AAGGTTTTTGTGGGTGGGCTATCACCTGAGGTGACTGAGGAGGCTTTCAG
GGCATACTTTGACACATTTGGAGAGATTACTGATGCCGTGGTGATGATGG
ATAGGACCACGGGGCGGAGTCGTGGATTCGGCTTTGTGACCTATGCGGAG
GAAGCAGCGATGAAGAAGGTATTGGCGCAACCACATGAGATGGACGGTAG
GCCGATGGATGTAAAGAGGGCGGAGCCCAAGATTCCAGATGGGGGTAGGG
AAGGTGGGTATAGAGGAGGGGGAGGAGGAGGGTATGGGGGAGGAAGGGGG
GGGGGAGGGGGCTATGGCGGGTATGGAGGTGGAGGGGGCTATTCTGGAGG
GGGATACGGGGAGGATAGGGGAGGATACATGCCGTACAGTAGAGGAGGGG
GGGGATACGGAGGAGGAGGAGGGTACCCATCGTATCGAGGAGGGGGGGGG
TATTCAGATCGGGGAGGACCAGTAGGGTACTCAGGTGGCGGCGGTTACAG
CAGCGCGTCGCGAGGCGGAGGGCGAGGAGGGTACGGTGAATATGCTGGAT
ACGCCGGGGGAGGTGGGGGAGGGGTGGGGGGTGGATATAGCTCTTATCCT
TCGCAGGGTTACGGTGGCTATCCGTCGTCGGCGCACGCTCCAGGGTACGG
TGGCTACCCCTCGTCCTCCTCTTCCTCCACTGCTCCCTATGCTCATGGCG
GGTACAGTGCGGGCCCTGTTGCTGTTGGTGCTCCGGCGTCGGGGTCGTAC
AACGGGCATGGAGCGCAGGGTTACCACGCTGGAGGAGGAGGAGGAGGAGG
AGGAGGGGGAGAAGGTGGGGCGAGCGGGTACGCGCCGCATCGTGGGCAGC
ACGCGCACCAGGGACGGGTGGAGAGGAGTCACCGCCCTTATTGA

Synonyms

Publications