jgi.p|Nanoce1779_2|597521, mRNA_6625 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597521
Unique Name	mRNA_6625
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1011
Alignment location	scaffold_18:308594..309604 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597607
Track	FilteredModels2
ProteinId	597521

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_18	supercontig	scaffold_18:308594..309604 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597521	gene_6625	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597521	mRNA_6625-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6625	CDS_6625	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_18:308594..309604+
coding sequence from alignment at scaffold_18:308594..309604+

mRNA sequence

>mRNA_6625 ID=mRNA_6625|Name=jgi.p|Nanoce1779_2|597521|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp
CAGCAGCAGCAGCCCTGGAAGGACAAGCAGCCGCTCCGGATTGGCCAGGC
TCTTATGCCCGTCATCAAGCCGCAGCAGAGGAAGAAGAAGCAGCAGCAGC
AGCAACAGCAGCAACAGCAACAGCAGCAGCAACAACAGCAGCCGCTTTCT
CTTTTCCCTGCGGCCTCTTTGGCTTCCCCGGCTTCGCAGTCCAGCCATGA
CACCAAGACCACCACCTGCTCTGGTGCCTCCTTCTCCTCCTCCAACACAT
TATCCCTCCCCTCCTCCGCCGCCTCCTCTTTCAAACCACTCTTCGCTACC
ACCATAAATAGCAGTAGCAGCAGCAGCAAAATTGCCGCGGCTGTTGCTAC
TGCTGCGGCTCCTGATACCACAACAGCGACTATGGCAGAAGGAAGAAAGG
GAGTAAAAGAAGGGAGGAATTGGGGTGGGACTGGAAGTCAGCGTTATACG
CGGAAGTGTCGATTTTTCGGGAAAGGCGATGGATGTAAGGATGGCGTGGC
GTGTTTATTTAGGCATGATTTTGGATCAGCAGGAGGGAAGATCGTTTAAA
TAGATCGACTAAAATAGAATAAAAGAAAAAAAAGTGGGAAGATGACGGAA
GGAAAAGGATAGATGAGAAAGCACCGGAGGGAGTTGAAAAGGAAATTAGT
GGGGCATCAAAATACTTTGTGTCATAGTATTAAGTAGATATCAGGGCCAT
TCATGCAGTTTATATTCTTTATTTCACATTGGGGTCCATGCCTAGGGGCT
GAAGGGCGCTGTCTAGCATTTCGACAAAAAATACAGTATATGTGCGGGAA
AGAGAGAGAGAGAGTGCTTTTGAGTAAAATTGTTTGGGAGCTTAGACCGT
AAAAGCAATCGACTAATCCACTAGAACATTCCACGGGTTCATTGAACAGA
GGTATGGAAAGTGAAAGATAAGACTTGTAACAGAGAAATTAGAATTATTG
TCCCCAAAAAAGAAACTCACAGTACGAAAGCAAAGCAAACAACGTCACAA
GAGAGGTCAAA

protein sequence of jgi.p|Nanoce1779_2|597521

>mRNA_6625-protein ID=mRNA_6625-protein|Name=jgi.p|Nanoce1779_2|597521|organism=Nannochloropsis oceanica|type=polypeptide|length=165bp
MPVIKPQQRKKKQQQQQQQQQQQQQQQQQPLSLFPAASLASPASQSSHDT
KTTTCSGASFSSSNTLSLPSSAASSFKPLFATTINSSSSSSKIAAAVATA
AAPDTTTATMAEGRKGVKEGRNWGGTGSQRYTRKCRFFGKGDGCKDGVAC
LFRHDFGSAGGKIV*

mRNA from alignment at scaffold_18:308594..309604+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6625 ID=mRNA_6625|Name=jgi.p|Nanoce1779_2|597521|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_18:308594..309604+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCCCTGGAAGGACAAGCAGCCGCTCCGGATTGGCCAGGC
TCTTATGCCCGTCATCAAGCCGCAGCAGAGGAAGAAGAAGCAGCAGCAGC
AGCAACAGCAGCAACAGCAACAGCAGCAGCAACAACAGCAGCCGCTTTCT
CTTTTCCCTGCGGCCTCTTTGGCTTCCCCGGCTTCGCAGTCCAGCCATGA
CACCAAGACCACCACCTGCTCTGGTGCCTCCTTCTCCTCCTCCAACACAT
TATCCCTCCCCTCCTCCGCCGCCTCCTCTTTCAAACCACTCTTCGCTACC
ACCATAAATAGCAGTAGCAGCAGCAGCAAAATTGCCGCGGCTGTTGCTAC
TGCTGCGGCTCCTGATACCACAACAGCGACTATGGCAGAAGGAAGAAAGG
GAGTAAAAGAAGGGAGGAATTGGGGTGGGACTGGAAGTCAGCGTTATACG
CGGAAGTGTCGATTTTTCGGGAAAGGCGATGGATGTAAGGATGGCGTGGC
GTGTTTATTTAGGCATGATTTTGGATCAGCAGGAGGGAAGATCGTTTAAA
TAGATCGACTAAAATAGAATAAAAGAAAAAAAAGTGGGAAGATGACGGAA
GGAAAAGGATAGATGAGAAAGCACCGGAGGGAGTTGAAAAGGAAATTAGT
GGGGCATCAAAATACTTTGTGTCATAGTATTAAGTAGATATCAGGGCCAT
TCATGCAGTTTATATTCTTTATTTCACATTGGGGTCCATGCCTAGGGGCT
GAAGGGCGCTGTCTAGCATTTCGACAAAAAATACAGTATATGTGCGGGAA
AGAGAGAGAGAGAGTGCTTTTGAGTAAAATTGTTTGGGAGCTTAGACCGT
AAAAGCAATCGACTAATCCACTAGAACATTCCACGGGTTCATTGAACAGA
GGTATGGAAAGTGAAAGATAAGACTTGTAACAGAGAAATTAGAATTATTG
TCCCCAAAAAAGAAACTCACAGTACGAAAGCAAAGCAAACAACGTCACAA
GAGAGGTCAAA

Coding sequence (CDS) from alignment at scaffold_18:308594..309604+

>mRNA_6625 ID=mRNA_6625|Name=jgi.p|Nanoce1779_2|597521|organism=Nannochloropsis oceanica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_18:308594..309604+ (Nannochloropsis oceanica)
ATGCCCGTCATCAAGCCGCAGCAGAGGAAGAAGAAGCAGCAGCAGCAGCA
ACAGCAGCAACAGCAACAGCAGCAGCAACAACAGCAGCCGCTTTCTCTTT
TCCCTGCGGCCTCTTTGGCTTCCCCGGCTTCGCAGTCCAGCCATGACACC
AAGACCACCACCTGCTCTGGTGCCTCCTTCTCCTCCTCCAACACATTATC
CCTCCCCTCCTCCGCCGCCTCCTCTTTCAAACCACTCTTCGCTACCACCA
TAAATAGCAGTAGCAGCAGCAGCAAAATTGCCGCGGCTGTTGCTACTGCT
GCGGCTCCTGATACCACAACAGCGACTATGGCAGAAGGAAGAAAGGGAGT
AAAAGAAGGGAGGAATTGGGGTGGGACTGGAAGTCAGCGTTATACGCGGA
AGTGTCGATTTTTCGGGAAAGGCGATGGATGTAAGGATGGCGTGGCGTGT
TTATTTAGGCATGATTTTGGATCAGCAGGAGGGAAGATCGTTTAA

Synonyms

Publications