jgi.p|Nanoce1779_2|550017, mRNA_818 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550017
Unique NamemRNA_818
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length886
Alignment locationscaffold_2:505512..506397 -

Link to JBrowse

Properties
Property NameValue
TranscriptId550103
TrackFilteredModels2
ProteinId550017
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:505512..506397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550017gene_818Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550017mRNA_818-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_818CDS_818Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_818 ID=mRNA_818|Name=jgi.p|Nanoce1779_2|550017|organism=Nannochloropsis oceanica|type=mRNA|length=886bp
AACAGTCTTTAACAGGACAAATACGGAGACTATGTCCCTCCTCGTTGTCT
CGGCCGCCTGTCGCCTAGTCCTATCACACTGTCGCAAGCGATCAAGGCCA
CCATTGTCCTGCCCCGTCATTTGTCACCTCAGCACCTCCTCAGCTGTCGC
CTCCGTCGAGACCTCGCACTCCCTTCTCGACTTCTCCAACATCGGCCCTC
CGGGTTTTGACACGTCCTCCGTGCAGGTCTTGCCCGATGTCATCACGCCT
GAAGAAGAGGCCCGACTTGTGGCCGAGTTGGAGGAGAATGTGCGGCGGCG
TCGATATGTCGCTAACCATTGGGACTCTGTTATTGAAAATTATCGGGAGG
TAGAAAAACGAGGATGGCTTGACCCCGGGAACAAAGCGCTGGCCGACCGG
ATCAAGAACCTCATTCTCCACACACTGCAGCGCCCTATGACATTGCCTTT
CCTCCCGGTGCATGTGATTGATTTAGCCAACGATGGATTTATCAAGCCTC
ATGTTGATAGTGTAAAATTTAGTGGCGACATTGTGAGTGGCCTCTCCCTG
TGCTCGCCCGCCATCATGCAACTCAAAGGCGACAAAGACCAAGGCATGGA
CCCCTTATCTATCGTTCGCTTGTTGCTACGGCCTCGTTCGTTGTATATTT
TAAGTGGGGAAGCAAGATATAAATACGCACACGAGATCTTGGCGCCTTCG
CCCGGGGGGGAAAGGTGGGTGGATGGGGTGGTGGTGGCACGTGGGCGACG
ATTATCTTTGATATTTAGGGATGAAAAGGTGCAGCAGCAAGAGGAGATTT
GAGGAAATCGAGGAGATGATAGAGGTGTACTTGGTAGTAAAATAGGAAAC
AAGAGTGAAAACAAAAACAATGTGCACCCGCCATGA
back to top

protein sequence of jgi.p|Nanoce1779_2|550017

>mRNA_818-protein ID=mRNA_818-protein|Name=jgi.p|Nanoce1779_2|550017|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MSLLVVSAACRLVLSHCRKRSRPPLSCPVICHLSTSSAVASVETSHSLLD
FSNIGPPGFDTSSVQVLPDVITPEEEARLVAELEENVRRRRYVANHWDSV
IENYREVEKRGWLDPGNKALADRIKNLILHTLQRPMTLPFLPVHVIDLAN
DGFIKPHVDSVKFSGDIVSGLSLCSPAIMQLKGDKDQGMDPLSIVRLLLR
PRSLYILSGEARYKYAHEILAPSPGGERWVDGVVVARGRRLSLIFRDEKV
QQQEEI*
back to top

mRNA from alignment at scaffold_2:505512..506397-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_818 ID=mRNA_818|Name=jgi.p|Nanoce1779_2|550017|organism=Nannochloropsis oceanica|type=mRNA|length=886bp|location=Sequence derived from alignment at scaffold_2:505512..506397- (Nannochloropsis oceanica)
AACAGTCTTTAACAGGACAAATACGGAGACTATGTCCCTCCTCGTTGTCT
CGGCCGCCTGTCGCCTAGTCCTATCACACTGTCGCAAGCGATCAAGGCCA
CCATTGTCCTGCCCCGTCATTTGTCACCTCAGCACCTCCTCAGCTGTCGC
CTCCGTCGAGACCTCGCACTCCCTTCTCGACTTCTCCAACATCGGCCCTC
CGGGTTTTGACACGTCCTCCGTGCAGGTCTTGCCCGATGTCATCACGCCT
GAAGAAGAGGCCCGACTTGTGGCCGAGTTGGAGGAGAATGTGCGGCGGCG
TCGATATGTCGCTAACCATTGGGACTCTGTTATTGAAAATTATCGGGAGG
TAGAAAAACGAGGATGGCTTGACCCCGGGAACAAAGCGCTGGCCGACCGG
ATCAAGAACCTCATTCTCCACACACTGCAGCGCCCTATGACATTGCCTTT
CCTCCCGGTGCATGTGATTGATTTAGCCAACGATGGATTTATCAAGCCTC
ATGTTGATAGTGTAAAATTTAGTGGCGACATTGTGAGTGGCCTCTCCCTG
TGCTCGCCCGCCATCATGCAACTCAAAGGCGACAAAGACCAAGGCATGGA
CCCCTTATCTATCGTTCGCTTGTTGCTACGGCCTCGTTCGTTGTATATTT
TAAGTGGGGAAGCAAGATATAAATACGCACACGAGATCTTGGCGCCTTCG
CCCGGGGGGGAAAGGTGGGTGGATGGGGTGGTGGTGGCACGTGGGCGACG
ATTATCTTTGATATTTAGGGATGAAAAGGTGCAGCAGCAAGAGGAGATTT
GAGGAAATCGAGGAGATGATAGAGGTGTACTTGGTAGTAAAATAGGAAAC
AAGAGTGAAAACAAAAACAATGTGCACCCGCCATGA
back to top

Coding sequence (CDS) from alignment at scaffold_2:505512..506397-

>mRNA_818 ID=mRNA_818|Name=jgi.p|Nanoce1779_2|550017|organism=Nannochloropsis oceanica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_2:505512..506397- (Nannochloropsis oceanica)
ATGTCCCTCCTCGTTGTCTCGGCCGCCTGTCGCCTAGTCCTATCACACTG
TCGCAAGCGATCAAGGCCACCATTGTCCTGCCCCGTCATTTGTCACCTCA
GCACCTCCTCAGCTGTCGCCTCCGTCGAGACCTCGCACTCCCTTCTCGAC
TTCTCCAACATCGGCCCTCCGGGTTTTGACACGTCCTCCGTGCAGGTCTT
GCCCGATGTCATCACGCCTGAAGAAGAGGCCCGACTTGTGGCCGAGTTGG
AGGAGAATGTGCGGCGGCGTCGATATGTCGCTAACCATTGGGACTCTGTT
ATTGAAAATTATCGGGAGGTAGAAAAACGAGGATGGCTTGACCCCGGGAA
CAAAGCGCTGGCCGACCGGATCAAGAACCTCATTCTCCACACACTGCAGC
GCCCTATGACATTGCCTTTCCTCCCGGTGCATGTGATTGATTTAGCCAAC
GATGGATTTATCAAGCCTCATGTTGATAGTGTAAAATTTAGTGGCGACAT
TGTGAGTGGCCTCTCCCTGTGCTCGCCCGCCATCATGCAACTCAAAGGCG
ACAAAGACCAAGGCATGGACCCCTTATCTATCGTTCGCTTGTTGCTACGG
CCTCGTTCGTTGTATATTTTAAGTGGGGAAGCAAGATATAAATACGCACA
CGAGATCTTGGCGCCTTCGCCCGGGGGGGAAAGGTGGGTGGATGGGGTGG
TGGTGGCACGTGGGCGACGATTATCTTTGATATTTAGGGATGAAAAGGTG
CAGCAGCAAGAGGAGATTTGA
back to top
Synonyms
Publications