jgi.p|Nanoce1779_2|573728, mRNA_668 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573728
Unique NamemRNA_668
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1324
Alignment locationscaffold_2:148953..150276 +

Link to JBrowse

Properties
Property NameValue
TranscriptId573814
TrackFilteredModels2
ProteinId573728
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:148953..150276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573728gene_668Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573728mRNA_668-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_668CDS_668Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_668 ID=mRNA_668|Name=jgi.p|Nanoce1779_2|573728|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp
ACAACAGGCCCATAGGCATTCAAACCTCACACCAACATGCCTCGTGGCAC
CGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCTCCCCTACCTCACTC
ATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGCGTCCCGTGAACTTC
TACTGGATGGACGTGGTCAACTGGGGTAACTATATCTCCCAGACGAAAGT
CCCCTTGCCGCACGCCACCTCTACCCCACTCAAGACCTATGAGACGCACC
GCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGGTTCCGTCTTGGGAC
CCGGATAGCATCCCGTTGAACGCACAGTTTGTGCATAGAGGGTTCGATCA
AGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCTTTACCTCGATGATT
GGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGCGGGCTGTCAGTAAA
TGCAACGAGACAGCTACTGCAGATTATGAAGACTCTCATGCGGCCTGTGT
CCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGAACGCGAACGAGATA
ACATCGAGGCATTGGTCACCCGGATGGAAACTCGCCTCGCGGGGGCTTTC
TGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAACATAGTTTTCTATG
GCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAACAACCTCACTGTCT
TTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTGAGACGCTGCTTCTT
AGTGCGCCTGCGAACGGCACCCGGCACGTGGACATCCACACCAACCCCAA
GCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGAATGGGCACAGGGCT
TTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGGAGGATGGTAACAAG
GAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAAAAGCAAGTCCATGC
CCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATTGCATCCTAGCCAAT
ATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCGATCAGGAAACTAAA
GAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAGGGGACACAGATTGG
ATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCTGTACAAAAATCCGG
AGGTGGGATACATGCCTGCTCTCCTCCCACAATTAATCCCATGCCCGGGG
ATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATTCGGCGGGTTGGGGG
ACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCTGTGAAGAGGGAGAG
AGGTGGATTGCACAAAGAAATAAA
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protein sequence of jgi.p|Nanoce1779_2|573728

>mRNA_668-protein ID=mRNA_668-protein|Name=jgi.p|Nanoce1779_2|573728|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MPRGTELLALPLVFLLLPYLTHGRACQVRNYAGRPVNFYWMDVVNWGNYI
SQTKVPLPHATSTPLKTYETHRFFAAFADEASEVPSWDPDSIPLNAQFVH
RGFDQVVTALVNEDGQLYLDDWDIHEGEMARLARAVSKCNETATADYEDS
HAACVLAEAGVLLQSLERERDNIEALVTRMETRLAGAFCTGTGRFQTPSK
HSFLWQGRKVDVLAETNNLTVFHLPAFLDASATETLLLSAPANGTRHVDI
HTNPKLSFDVSLAARQEWAQGFVSAQLGGKGGMEDGNKEEEALHIFRYNQ
KQVHAPPCDGICQSLSLHPSQYAATLLLYPQHSDQETKEMAAWLFTTEEE
GTQIGFTSQGNDAVIFLYKNPEVGYMPALLPQLIPCPGMPKEMFVASQWI
RRVGGQGGERGSVGDEL*
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mRNA from alignment at scaffold_2:148953..150276+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_668 ID=mRNA_668|Name=jgi.p|Nanoce1779_2|573728|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at scaffold_2:148953..150276+ (Nannochloropsis oceanica)
ACAACAGGCCCATAGGCATTCAAACCTCACACCAACATGCCTCGTGGCAC
CGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCTCCCCTACCTCACTC
ATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGCGTCCCGTGAACTTC
TACTGGATGGACGTGGTCAACTGGGGTAACTATATCTCCCAGACGAAAGT
CCCCTTGCCGCACGCCACCTCTACCCCACTCAAGACCTATGAGACGCACC
GCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGGTTCCGTCTTGGGAC
CCGGATAGCATCCCGTTGAACGCACAGTTTGTGCATAGAGGGTTCGATCA
AGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCTTTACCTCGATGATT
GGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGCGGGCTGTCAGTAAA
TGCAACGAGACAGCTACTGCAGATTATGAAGACTCTCATGCGGCCTGTGT
CCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGAACGCGAACGAGATA
ACATCGAGGCATTGGTCACCCGGATGGAAACTCGCCTCGCGGGGGCTTTC
TGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAACATAGTTTTCTATG
GCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAACAACCTCACTGTCT
TTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTGAGACGCTGCTTCTT
AGTGCGCCTGCGAACGGCACCCGGCACGTGGACATCCACACCAACCCCAA
GCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGAATGGGCACAGGGCT
TTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGGAGGATGGTAACAAG
GAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAAAAGCAAGTCCATGC
CCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATTGCATCCTAGCCAAT
ATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCGATCAGGAAACTAAA
GAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAGGGGACACAGATTGG
ATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCTGTACAAAAATCCGG
AGGTGGGATACATGCCTGCTCTCCTCCCACAATTAATCCCATGCCCGGGG
ATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATTCGGCGGGTTGGGGG
ACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCTGTGAAGAGGGAGAG
AGGTGGATTGCACAAAGAAATAAA
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Coding sequence (CDS) from alignment at scaffold_2:148953..150276+

>mRNA_668 ID=mRNA_668|Name=jgi.p|Nanoce1779_2|573728|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_2:148953..150276+ (Nannochloropsis oceanica)
ATGCCTCGTGGCACCGAGCTCCTGGCCTTGCCCCTTGTCTTCCTTCTCCT
CCCCTACCTCACTCATGGTCGTGCATGCCAAGTCCGCAATTATGCCGGGC
GTCCCGTGAACTTCTACTGGATGGACGTGGTCAACTGGGGTAACTATATC
TCCCAGACGAAAGTCCCCTTGCCGCACGCCACCTCTACCCCACTCAAGAC
CTATGAGACGCACCGCTTCTTCGCTGCATTTGCAGACGAAGCCAGTGAGG
TTCCGTCTTGGGACCCGGATAGCATCCCGTTGAACGCACAGTTTGTGCAT
AGAGGGTTCGATCAAGTGGTGACGGCCTTGGTGAACGAGGATGGACAGCT
TTACCTCGATGATTGGGACATCCACGAAGGGGAGATGGCGCGGTTGGCGC
GGGCTGTCAGTAAATGCAACGAGACAGCTACTGCAGATTATGAAGACTCT
CATGCGGCCTGTGTCCTTGCCGAGGCCGGTGTGCTTCTTCAAAGCTTGGA
ACGCGAACGAGATAACATCGAGGCATTGGTCACCCGGATGGAAACTCGCC
TCGCGGGGGCTTTCTGCACAGGAACGGGACGTTTTCAGACCCCAAGTAAA
CATAGTTTTCTATGGCAAGGGCGTAAAGTAGACGTACTAGCAGAGACAAA
CAACCTCACTGTCTTTCACCTCCCTGCCTTCCTTGACGCGTCCGCCACTG
AGACGCTGCTTCTTAGTGCGCCTGCGAACGGCACCCGGCACGTGGACATC
CACACCAACCCCAAGCTAAGTTTCGATGTCTCCTTAGCTGCCCGCCAGGA
ATGGGCACAGGGCTTTGTCAGTGCTCAGCTAGGCGGGAAAGGAGGGATGG
AGGATGGTAACAAGGAGGAAGAGGCTCTCCACATCTTCAGGTACAACCAA
AAGCAAGTCCATGCCCCTCCTTGTGATGGTATCTGCCAAAGCCTGTCATT
GCATCCTAGCCAATATGCAGCCACCCTCCTCCTGTACCCTCAGCACTCCG
ATCAGGAAACTAAAGAGATGGCGGCGTGGTTGTTCACAACGGAGGAGGAG
GGGACACAGATTGGATTCACCTCTCAAGGGAACGACGCCGTTATCTTCCT
GTACAAAAATCCGGAGGTGGGATACATGCCTGCTCTCCTCCCACAATTAA
TCCCATGCCCGGGGATGCCAAAGGAGATGTTTGTGGCTTCGCAATGGATT
CGGCGGGTTGGGGGACAGGGGGGGGAGAGAGGGTCTGTAGGGGATGAGCT
GTGA
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Synonyms
Publications