jgi.p|Nanoce1779_2|599050, mRNA_7521 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|599050
Unique Name	mRNA_7521
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1153
Alignment location	scaffold_20:170256..172096 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	599136
Track	FilteredModels2
ProteinId	599050

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_20	supercontig	scaffold_20:170256..172096 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599050	gene_7521	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599050	mRNA_7521-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7521	CDS_7521	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_20:170256..172096+
coding sequence from alignment at scaffold_20:170256..172096+

mRNA sequence

>mRNA_7521 ID=mRNA_7521|Name=jgi.p|Nanoce1779_2|599050|organism=Nannochloropsis oceanica|type=mRNA|length=1153bp
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGTGACGG
CACCTTGACCCTGGTGACAGCACCCGTGATCTTACTCCGGAAACTGTCTC
CACTTCTTCTTGGTTTCCTTCCCATGCTTGCCCCATCATCGCCTTACGGG
CAGGCCTCGTCAGTAGCTAATGCGGCCACTTTTACCTCCACTTTTTTTGA
GCCATCAACAACGATGTCGGCTGTTGCCTTTGACGACGCGATGGAAAAGG
CGAAGGCAGGAGAGGAGGAGGTGATGGGCATGGTAGAAGTAGGAGAGGAG
AAAGACGGGCTCCGCCTGATGGGGAAGGTGGAACCAATTGATAAGCTGGG
AAAGGAGGCAGAGGGTATCTTCAAGCGTGCCCGTATTGCGGAATCGGATA
ACGAATTCGAGAAAGCTTTGAGGCTGTACGATCGAGTCACGCGCATCGCA
CCGGGTTATGCGTATGCGTGGAGCAACAAGGGCAATGCGTACATCGCCTT
GGGAGATCTCGAAAAGGGTCTAGACTCATATAACCGGGCCATCGAGCTCC
TACCGTCCAAGGCCGGGGACGCTTGGCTGGTGTACCTTAACAAAGCCACC
ACGGAACTCGCCCTCGACCGAATAGACGCCGCCATCACCGACTTGGACCT
TGCGAGAGTTCTGCACGGACAGCCGGATATGCTGCTTTTCGCCAACAAGG
GCCTGGCGTTGGAGAGGAAAGGGAAGTTTGGACCGGCCCTTGAGAACTAT
GAATTTGCTGTCATGAGCAAGCCCAAGGACGTGCAGCCGTGGTGGTTGAG
GTACTCCCTCGTCCTGTTCCAGGAGCAACAAGACATCAAGTCTATGGAGG
TCATGCGAAAAGTGTCGGGGAAATTTGGGCGTGTGGAAGAAATCAAGGTG
GCCCTCGCGACGATCGTCTACGCCTATGGAGACAAGAACGAAGCTGAACG
AATGTGGAGCGAACTGAACGGCCAGGCCCAGTATAAGTACAGGGACGAGG
ATTTTCTTAGAAACAAATTAAGGTGGCCCCAGAGGATGATTGACACACTC
AGAGAGTTCAAGGGGCTTTATACATCGAGGGTCTAGGAAGGGAGGGAGGG
GGGGAAGGAGGGAGGGTAGGAGGGGATAGGGAAGAAGAAGCAGGCAATCA
TCG

protein sequence of jgi.p|Nanoce1779_2|599050

>mRNA_7521-protein ID=mRNA_7521-protein|Name=jgi.p|Nanoce1779_2|599050|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MLAPSSPYGQASSVANAATFTSTFFEPSTTMSAVAFDDAMEKAKAGEEEV
MGMVEVGEEKDGLRLMGKVEPIDKLGKEAEGIFKRARIAESDNEFEKALR
LYDRVTRIAPGYAYAWSNKGNAYIALGDLEKGLDSYNRAIELLPSKAGDA
WLVYLNKATTELALDRIDAAITDLDLARVLHGQPDMLLFANKGLALERKG
KFGPALENYEFAVMSKPKDVQPWWLRYSLVLFQEQQDIKSMEVMRKVSGK
FGRVEEIKVALATIVYAYGDKNEAERMWSELNGQAQYKYRDEDFLRNKLR
WPQRMIDTLREFKGLYTSRV*

mRNA from alignment at scaffold_20:170256..172096+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7521 ID=mRNA_7521|Name=jgi.p|Nanoce1779_2|599050|organism=Nannochloropsis oceanica|type=mRNA|length=1841bp|location=Sequence derived from alignment at scaffold_20:170256..172096+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGTGACGG
CACCTTGACCCTGGTGACAGCACCCGTGATCTTACTCCGGAAACTGTCTC
CACTTCTTCTTGGTTTCCTTCCCATGCTTGCCCCATCATCGCCTTACGGG
CAGGCCTCGTCAGTAGCTAATGCGGCCACTTTTACCTCCACTTTTTTTGA
GCCATCAACAACGATGTCGGCTGTTGCCTTTGACGACGCGATGGAAAAGG
CGAAGGCAGGAGAGGAGGAGGTGATGGGCATGGTAGAAGTAGGAGAGGAG
AAAGACGGGCTCCGCCTGATGGGGAAGGTGGAACCAATTGATAAGCTGGG
AAAGGAGGCAGAGGGTATCTTCAAGGTGCGTAGGTTGGAAGAGAAAGGGA
GGGACGAAAATATTTGAGAGTACAAGGTGGATATGCTGCCTTTTTAAACC
TCTTTTTCCATCCTCTCCTCCACCCACAACATGCACACTCACACACTCAG
CGTGCCCGTATTGCGGAATCGGATAACGAATTCGAGAAAGCTTTGAGGCT
GTACGATCGAGTCACGCGCATCGCACCGGGTTATGCGTATGCGTGGAGCA
ACAAGGGCAATGCGTACATCGCCTTGGGAGATCTCGAAAAGGTAAGAGAG
GAGGGAAGGAGGGAAAGGAGGGAAGGAGGACAGGTGCACGAGCTCCCAAT
ATGTTTTACTGCGACATCAGGCGCAATCAATCAATATCTTTTCCTTTCCT
TTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCACAGGGTCTAGACTC
ATATAACCGGGCCATCGAGCTCCTACCGTCCAAGGCCGGGGACGCTTGGC
TGGTGTACCTTAACAAAGCCACCACGGAACTCGCCCTCGACCGAATAGAC
GCCGCCATCACCGACTTGGACCTTGCGAGAGTTCTGCACGGACAGCCGGA
TATGCTGCTTTTCGCCAACAAGGGCCTGGCGTTGGAGAGGAAAGGGAAGT
TTGGACCGGCCCTTGAGAACTATGAATTTGCTGTCATGAGCAAGCCCAAG
GACGTGCAGCCGTGGTGGTTGAGGTGCGTACATACGCCCCACCCTTCCCT
CTCTCCCTCTTTGCCTCCCCCCCTCCTTCAGGTACTCCCTCGTCCTTTTT
CAGGAGCAACAAAACATCAAGTCTATGGAGGGTGATGCGAAAACTGACGT
CTCCTTCCCTCCCTCCTTCCCTCCTCCCTCCCTCCTTCAGGTACTCCCTC
GTCCTGTTCCAGGAGCAACAAGACATCAAGTCTATGGAGGTCATGCGAAA
AGTGTCGGGGAAATTTGGGCGTGTGGAAGAAATCAAGGTGGCCCTCGCGA
GTAAGTAGGTGGAGACGAGGGAGGGAGGGAGGAAGGGAGGGAGGAAGGGA
CAGGTGTGACTGAGGAAGGTATGAGTCATCCCACGGGGGAGATAGAAAAA
TATAAAAAGGCAGAGGGCATTTGGAAGGAGGGCAGGGGGGAAGGTAGGGA
GGGAGGAAGGGCGAGATATCTCCCCACATGTTCACACTCTTATTGCCTTC
CTCTTACTATCCTCTCCTCCCTCCTTCTCTCGCTCCCTCCCTCCTTAGCG
ATCGTCTACGCCTATGGAGACAAGAACGAAGCTGAACGAATGTGGAGCGA
ACTGAACGGCCAGGCCCAGTATAAGTACAGGGACGAGGATTTTCTTAGAA
ACAAATTAAGGTGGCCCCAGAGGATGATTGACACACTCAGAGAGTTCAAG
GGGCTTTATACATCGAGGGTCTAGGAAGGGAGGGAGGGGGGGAAGGAGGG
AGGGTAGGAGGGGATAGGGAAGAAGAAGCAGGCAATCATCG

Coding sequence (CDS) from alignment at scaffold_20:170256..172096+

>mRNA_7521 ID=mRNA_7521|Name=jgi.p|Nanoce1779_2|599050|organism=Nannochloropsis oceanica|type=CDS|length=4815bp|location=Sequence derived from alignment at scaffold_20:170256..172096+ (Nannochloropsis oceanica)
ATGCTTGCCCCATCATCGCCTTACGGGCAGGCCTCGTCAGTAGCTAATGC
GGCCACTTTTACCTCCACTTTTTTTGAGCCATCAACAACGATGTCGGCTG
TTGCCTTTGACGACGCGATGGAAAAGGCGAAGGCAGGAGAGGAGGAGGTG
ATGGGCATGGTAGAAGTAGGAGAGGAGAAAGACGGGCTCCGCCTGATGGG
GAAGGTGGAACCAATTGATAAGCTGGGAAAGGAGGCAGAGGGTATCTTCA
AGCGTGCCCGTATTGCGGAATCGGATAACGAATTCGAGAAAGCTTTGAGG
CTGTACGATCGAGTCACGCGCATCGCACCGGGTTATGCGTATGCGTGGAG
CAACAAGGGCAATGCGTACATCGCCTTGGGAGATCTCGAAAAGGGTCTAG
ACTCATATAACCGGGCCATCGAGCTCCTACCGTCCAAGGCCGGGGACGCT
TGGCTGGTGTACCTTAACAAAGCCACCACGGAACTCGCCCTCGACCGAAT
AGACGCCGCCATCACCGACTTGGACCTTGCGAGAGTTCTGCACGGACAGC
CGGATATGCTGCTTTTCGCCAACAAGGGCCTGGCGTTGGAGAGGAAAGGG
AAGTTTGGACCGGCCCTTGAGAACTATGAATTTGCTGTCATGAGCAAGCC
CAAGGACGTGCAGCCGTGGTGGTTGAGGTACTCCCTCGTCCTGTTCCAGG
AGCAACAAGACATCAAGTCTATGGAGGTCATGCGAAAAGTGTCGGGGAAA
TTTGGGCGTGTGGAAGAAATCAAGGTGGCCCTCGCGACGATCGTCTACGC
CTATGGAGACAAGAACGAAGCTGAACGAATGTGGAGCGAACTGAACGGCC
AGGCCCAGTATAAGTACAGGGACGAGGATTTTCTTAGAAACAAATTAAGG
TGGCCCCAGAGGATGATTGACACACTCAGAGAGTTCAAGGGGCTTTATAC
ATCGAGGGTCTAGATGCTTGCCCCATCATCGCCTTACGGGCAGGCCTCGT
CAGTAGCTAATGCGGCCACTTTTACCTCCACTTTTTTTGAGCCATCAACA
ACGATGTCGGCTGTTGCCTTTGACGACGCGATGGAAAAGGCGAAGGCAGG
AGAGGAGGAGGTGATGGGCATGGTAGAAGTAGGAGAGGAGAAAGACGGGC
TCCGCCTGATGGGGAAGGTGGAACCAATTGATAAGCTGGGAAAGGAGGCA
GAGGGTATCTTCAAGCGTGCCCGTATTGCGGAATCGGATAACGAATTCGA
GAAAGCTTTGAGGCTGTACGATCGAGTCACGCGCATCGCACCGGGTTATG
CGTATGCGTGGAGCAACAAGGGCAATGCGTACATCGCCTTGGGAGATCTC
GAAAAGGGTCTAGACTCATATAACCGGGCCATCGAGCTCCTACCGTCCAA
GGCCGGGGACGCTTGGCTGGTGTACCTTAACAAAGCCACCACGGAACTCG
CCCTCGACCGAATAGACGCCGCCATCACCGACTTGGACCTTGCGAGAGTT
CTGCACGGACAGCCGGATATGCTGCTTTTCGCCAACAAGGGCCTGGCGTT
GGAGAGGAAAGGGAAGTTTGGACCGGCCCTTGAGAACTATGAATTTGCTG
TCATGAGCAAGCCCAAGGACGTGCAGCCGTGGTGGTTGAGGTACTCCCTC
GTCCTGTTCCAGGAGCAACAAGACATCAAGTCTATGGAGGTCATGCGAAA
AGTGTCGGGGAAATTTGGGCGTGTGGAAGAAATCAAGGTGGCCCTCGCGA
CGATCGTCTACGCCTATGGAGACAAGAACGAAGCTGAACGAATGTGGAGC
GAACTGAACGGCCAGGCCCAGTATAAGTACAGGGACGAGGATTTTCTTAG
AAACAAATTAAGGTGGCCCCAGAGGATGATTGACACACTCAGAGAGTTCA
AGGGGCTTTATACATCGAGGGTCTAGATGCTTGCCCCATCATCGCCTTAC
GGGCAGGCCTCGTCAGTAGCTAATGCGGCCACTTTTACCTCCACTTTTTT
TGAGCCATCAACAACGATGTCGGCTGTTGCCTTTGACGACGCGATGGAAA
AGGCGAAGGCAGGAGAGGAGGAGGTGATGGGCATGGTAGAAGTAGGAGAG
GAGAAAGACGGGCTCCGCCTGATGGGGAAGGTGGAACCAATTGATAAGCT
GGGAAAGGAGGCAGAGGGTATCTTCAAGCGTGCCCGTATTGCGGAATCGG
ATAACGAATTCGAGAAAGCTTTGAGGCTGTACGATCGAGTCACGCGCATC
GCACCGGGTTATGCGTATGCGTGGAGCAACAAGGGCAATGCGTACATCGC
CTTGGGAGATCTCGAAAAGGGTCTAGACTCATATAACCGGGCCATCGAGC
TCCTACCGTCCAAGGCCGGGGACGCTTGGCTGGTGTACCTTAACAAAGCC
ACCACGGAACTCGCCCTCGACCGAATAGACGCCGCCATCACCGACTTGGA
CCTTGCGAGAGTTCTGCACGGACAGCCGGATATGCTGCTTTTCGCCAACA
AGGGCCTGGCGTTGGAGAGGAAAGGGAAGTTTGGACCGGCCCTTGAGAAC
TATGAATTTGCTGTCATGAGCAAGCCCAAGGACGTGCAGCCGTGGTGGTT
GAGGTACTCCCTCGTCCTGTTCCAGGAGCAACAAGACATCAAGTCTATGG
AGGTCATGCGAAAAGTGTCGGGGAAATTTGGGCGTGTGGAAGAAATCAAG
GTGGCCCTCGCGACGATCGTCTACGCCTATGGAGACAAGAACGAAGCTGA
ACGAATGTGGAGCGAACTGAACGGCCAGGCCCAGTATAAGTACAGGGACG
AGGATTTTCTTAGAAACAAATTAAGGTGGCCCCAGAGGATGATTGACACA
CTCAGAGAGTTCAAGGGGCTTTATACATCGAGGGTCTAGATGCTTGCCCC
ATCATCGCCTTACGGGCAGGCCTCGTCAGTAGCTAATGCGGCCACTTTTA
CCTCCACTTTTTTTGAGCCATCAACAACGATGTCGGCTGTTGCCTTTGAC
GACGCGATGGAAAAGGCGAAGGCAGGAGAGGAGGAGGTGATGGGCATGGT
AGAAGTAGGAGAGGAGAAAGACGGGCTCCGCCTGATGGGGAAGGTGGAAC
CAATTGATAAGCTGGGAAAGGAGGCAGAGGGTATCTTCAAGCGTGCCCGT
ATTGCGGAATCGGATAACGAATTCGAGAAAGCTTTGAGGCTGTACGATCG
AGTCACGCGCATCGCACCGGGTTATGCGTATGCGTGGAGCAACAAGGGCA
ATGCGTACATCGCCTTGGGAGATCTCGAAAAGGGTCTAGACTCATATAAC
CGGGCCATCGAGCTCCTACCGTCCAAGGCCGGGGACGCTTGGCTGGTGTA
CCTTAACAAAGCCACCACGGAACTCGCCCTCGACCGAATAGACGCCGCCA
TCACCGACTTGGACCTTGCGAGAGTTCTGCACGGACAGCCGGATATGCTG
CTTTTCGCCAACAAGGGCCTGGCGTTGGAGAGGAAAGGGAAGTTTGGACC
GGCCCTTGAGAACTATGAATTTGCTGTCATGAGCAAGCCCAAGGACGTGC
AGCCGTGGTGGTTGAGGTACTCCCTCGTCCTGTTCCAGGAGCAACAAGAC
ATCAAGTCTATGGAGGTCATGCGAAAAGTGTCGGGGAAATTTGGGCGTGT
GGAAGAAATCAAGGTGGCCCTCGCGACGATCGTCTACGCCTATGGAGACA
AGAACGAAGCTGAACGAATGTGGAGCGAACTGAACGGCCAGGCCCAGTAT
AAGTACAGGGACGAGGATTTTCTTAGAAACAAATTAAGGTGGCCCCAGAG
GATGATTGACACACTCAGAGAGTTCAAGGGGCTTTATACATCGAGGGTCT
AGATGCTTGCCCCATCATCGCCTTACGGGCAGGCCTCGTCAGTAGCTAAT
GCGGCCACTTTTACCTCCACTTTTTTTGAGCCATCAACAACGATGTCGGC
TGTTGCCTTTGACGACGCGATGGAAAAGGCGAAGGCAGGAGAGGAGGAGG
TGATGGGCATGGTAGAAGTAGGAGAGGAGAAAGACGGGCTCCGCCTGATG
GGGAAGGTGGAACCAATTGATAAGCTGGGAAAGGAGGCAGAGGGTATCTT
CAAGCGTGCCCGTATTGCGGAATCGGATAACGAATTCGAGAAAGCTTTGA
GGCTGTACGATCGAGTCACGCGCATCGCACCGGGTTATGCGTATGCGTGG
AGCAACAAGGGCAATGCGTACATCGCCTTGGGAGATCTCGAAAAGGGTCT
AGACTCATATAACCGGGCCATCGAGCTCCTACCGTCCAAGGCCGGGGACG
CTTGGCTGGTGTACCTTAACAAAGCCACCACGGAACTCGCCCTCGACCGA
ATAGACGCCGCCATCACCGACTTGGACCTTGCGAGAGTTCTGCACGGACA
GCCGGATATGCTGCTTTTCGCCAACAAGGGCCTGGCGTTGGAGAGGAAAG
GGAAGTTTGGACCGGCCCTTGAGAACTATGAATTTGCTGTCATGAGCAAG
CCCAAGGACGTGCAGCCGTGGTGGTTGAGGTACTCCCTCGTCCTGTTCCA
GGAGCAACAAGACATCAAGTCTATGGAGGTCATGCGAAAAGTGTCGGGGA
AATTTGGGCGTGTGGAAGAAATCAAGGTGGCCCTCGCGACGATCGTCTAC
GCCTATGGAGACAAGAACGAAGCTGAACGAATGTGGAGCGAACTGAACGG
CCAGGCCCAGTATAAGTACAGGGACGAGGATTTTCTTAGAAACAAATTAA
GGTGGCCCCAGAGGATGATTGACACACTCAGAGAGTTCAAGGGGCTTTAT
ACATCGAGGGTCTAG

Synonyms

Publications