jgi.p|Nanoce1779_2|599565, mRNA_7660 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|599565
Unique NamemRNA_7660
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1098
Alignment locationscaffold_21:2735..4045 +

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Properties
Property NameValue
TranscriptId599651
TrackFilteredModels2
ProteinId599565
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:2735..4045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599565gene_7660Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599565mRNA_7660-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7660CDS_7660Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7660 ID=mRNA_7660|Name=jgi.p|Nanoce1779_2|599565|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
TAAGCCGGCCAATACAGAGCTTGGTCCACGCAGCCAAGCCGCTTGTCTTT
CTCCCCCCTCGCCCGTTGTTGTTTTGGCGATAAGCTACTAACGCAACGCA
CACAAGCACTCAAGCACTAGTGCTTAGCACTCAAGCAGCACAAACTCCCA
CCACCCACGATCAGGGCCCCCAGTCCAGCCGTGGTCATGGACCGCACTCG
CGAGTTTCAGGGCCTCCTCAAACTATTTGGCATGACAGATTTGCCCGTCG
AGGACGAGCCCGACGACTTCCACCACAACGGCTCCTCCTCCACTGACCCC
TCCTCCTCCACTTCCTCCTTCCCTCCGCATGGCACTTCTGACTTCGGGGC
TGCGGCCGCTACAGTTGCCAAGGAGTTCACGAGTATTCGGAGACTTGTCC
ATCGGTTACAGCGTTTGGTGACACGAAAAGGCATGCACAATGACCCCACC
GCGGAGATAGAAGACGTGACGGCGGTCTTTAAGAAGGACCTGGGGAGATT
GCAAGGGGACATTGAGAGCTTACTGCGGTTCGCGGAAAAACACTATCGGT
AGGGAAGGAGGGAAGGAGGAAGGGAGGGAGCCAGGACGGGCTGGAGAGCA
CACATGAGATTGCTTGCCTTGTTTCTATTCAATCAGATGCACATAATACA
GGCAAGGCCAACAACGCCACCGACACTGCACCTGTGTCGTTGAAGGCCTC
AAAATACGCGCCACCGAACACACCAAGCTTTTCCAAGCCGCCCTCCAGGT
CCGGCAAGGCGTCCTAAAGGACCAGGCCGACCGAAGAAAGCTCTTTACCC
ACTCAGCCCGCGGCCCAGCACTAGCCTATGATTCTCCCTTGTTTGTCGGA
CCCGCTCCTCCACCTCGGGTTCATCCTCCCCCTCCTCCTCCCCCGCAACG
GTCGTCACCGCCACCTGTTCCGTTTGATGTTGGTGTGGAGGAAGGAAATC
GAAATGGGCAATATCAGCAGCAGCAGCATCCACGTCCTGAGCAGTACCAA
CGGTCTTGGCAGCAGCAGCAGCAGCAGCAGCTGGGGCAGCAGCAAAGTAG
ATTTCCTCCACCTCCACCTCCACATCGGTCTCCTCCTCCACCTCGACA
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protein sequence of jgi.p|Nanoce1779_2|599565

>mRNA_7660-protein ID=mRNA_7660-protein|Name=jgi.p|Nanoce1779_2|599565|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MDRTREFQGLLKLFGMTDLPVEDEPDDFHHNGSSSTDPSSSTSSFPPHGT
SDFGAAAATVAKEFTSIRRLVHRLQRLVTRKGMHNDPTAEIEDVTAVFKK
DLGRLQGDIESLLRFAEKHYR*
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mRNA from alignment at scaffold_21:2735..4045+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7660 ID=mRNA_7660|Name=jgi.p|Nanoce1779_2|599565|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp|location=Sequence derived from alignment at scaffold_21:2735..4045+ (Nannochloropsis oceanica)
TAAGCCGGCCAATACAGAGCTTGGTCCACGCAGCCAAGCCGCTTGTCTTT
CTCCCCCCTCGCCCGTTGTTGTTTTGGCGATAAGCTACTAACGCAACGCA
CACAAGCACTCAAGCACTAGTGCTTAGCACTCAAGCAGCACAAACTCCCA
CCACCCACGATCAGGGCCCCCAGTCCAGCCGTGGTCATGGACCGCACTCG
CGAGTTTCAGGGCCTCCTCAAACTATTTGGCATGACAGATTTGCCCGTCG
AGGTACGTTTGGGTATATAAGGGGGACAAGGTGGGGCATGAGTAGCTTGT
GTGTGATGGTTGTGCGGGGCTTCGCCGCTGTACTTCCCCCATTTTCACTT
TATCCCTGTGCAGTTTCAGTAATTCCGCCAGTCGTGCAGCCCGAATGGAA
ATTGTGCCCTCTTCTCCCATCTTCATTGTCTCGATCCAATTCCTCCCCTC
CCTCCCTCCCTTCAGGACGAGCCCGACGACTTCCACCACAACGGCTCCTC
CTCCACTGACCCCTCCTCCTCCACTTCCTCCTTCCCTCCGCATGGCACTT
CTGACTTCGGGGCTGCGGCCGCTACAGTTGCCAAGGAGTTCACGAGTATT
CGGAGACTTGTCCATCGGTTACAGCGTTTGGTGACACGAAAAGGCATGCA
CAATGACCCCACCGCGGAGATAGAAGACGTGACGGCGGTCTTTAAGAAGG
ACCTGGGGAGATTGCAAGGGGACATTGAGAGCTTACTGCGGTTCGCGGAA
AAACACTATCGGTAGGGAAGGAGGGAAGGAGGAAGGGAGGGAGCCAGGAC
GGGCTGGAGAGCACACATGAGATTGCTTGCCTTGTTTCTATTCAATCAGA
TGCACATAATACAGGCAAGGCCAACAACGCCACCGACACTGCACCTGTGT
CGTTGAAGGCCTCAAAATACGCGCCACCGAACACACCAAGCTTTTCCAAG
CCGCCCTCCAGGTCCGGCAAGGCGTCCTAAAGGACCAGGCCGACCGAAGA
AAGCTCTTTACCCACTCAGCCCGCGGCCCAGCACTAGCCTATGATTCTCC
CTTGTTTGTCGGACCCGCTCCTCCACCTCGGGTTCATCCTCCCCCTCCTC
CTCCCCCGCAACGGTCGTCACCGCCACCTGTTCCGTTTGATGTTGGTGTG
GAGGAAGGAAATCGAAATGGGCAATATCAGCAGCAGCAGCATCCACGTCC
TGAGCAGTACCAACGGTCTTGGCAGCAGCAGCAGCAGCAGCAGCTGGGGC
AGCAGCAAAGTAGATTTCCTCCACCTCCACCTCCACATCGGTCTCCTCCT
CCACCTCGACA
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Coding sequence (CDS) from alignment at scaffold_21:2735..4045+

>mRNA_7660 ID=mRNA_7660|Name=jgi.p|Nanoce1779_2|599565|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_21:2735..4045+ (Nannochloropsis oceanica)
ATGGACCGCACTCGCGAGTTTCAGGGCCTCCTCAAACTATTTGGCATGAC
AGATTTGCCCGTCGAGGACGAGCCCGACGACTTCCACCACAACGGCTCCT
CCTCCACTGACCCCTCCTCCTCCACTTCCTCCTTCCCTCCGCATGGCACT
TCTGACTTCGGGGCTGCGGCCGCTACAGTTGCCAAGGAGTTCACGAGTAT
TCGGAGACTTGTCCATCGGTTACAGCGTTTGGTGACACGAAAAGGCATGC
ACAATGACCCCACCGCGGAGATAGAAGACGTGACGGCGGTCTTTAAGAAG
GACCTGGGGAGATTGCAAGGGGACATTGAGAGCTTACTGCGGTTCGCGGA
AAAACACTATCGGTAGATGGACCGCACTCGCGAGTTTCAGGGCCTCCTCA
AACTATTTGGCATGACAGATTTGCCCGTCGAGGACGAGCCCGACGACTTC
CACCACAACGGCTCCTCCTCCACTGACCCCTCCTCCTCCACTTCCTCCTT
CCCTCCGCATGGCACTTCTGACTTCGGGGCTGCGGCCGCTACAGTTGCCA
AGGAGTTCACGAGTATTCGGAGACTTGTCCATCGGTTACAGCGTTTGGTG
ACACGAAAAGGCATGCACAATGACCCCACCGCGGAGATAGAAGACGTGAC
GGCGGTCTTTAAGAAGGACCTGGGGAGATTGCAAGGGGACATTGAGAGCT
TACTGCGGTTCGCGGAAAAACACTATCGGTAG
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Synonyms
Publications