jgi.p|Nanoce1779_2|185784, mRNA_8194 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|185784
Unique Name	mRNA_8194
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1645
Alignment location	scaffold_23:7476..9369 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	185870
Track	FilteredModels2
ProteinId	185784

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:7476..9369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|185784	gene_8194	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|185784	mRNA_8194-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8194	CDS_8194	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:7476..9369+
coding sequence from alignment at scaffold_23:7476..9369+

mRNA sequence

>mRNA_8194 ID=mRNA_8194|Name=jgi.p|Nanoce1779_2|185784|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
CCACCTTTCCTCCCCCCTCCGCCCTCCACCCTGCCTGCCTCCTCCTCGGC
CGTTACCACCGTTCTCTCCAACGATCCCCTCCTCCAACACCTTCTCACCT
GCTACCTCTCCCTTTCCGACCAGCTCCTCCACATGGCCACCGTCTCCCCA
CGCTGGCGTCGACTCATGCAATCCCAACCCGCCCTCCACCTCTCCCTTCC
CTCCCCGTCTGCCATCCCTGCCTCAACCTTCCTCTCCTCCCCAAGAGGCA
TCAGTGCCTACCTCTCCTCTGTCCGTCGGGCTGGGTTTGCAGCATGTCCT
ATCCCTCTCCTTTCCTTCCTCGCTCATCAATGACCCTGATTTGGCGGCTA
CCATTACCACCTTCGCGTCTACCCTGACCGGCATCGATGTCTCTTATTGC
CCATGTCTCACCGACCGTGGCCTCCTGCCCTCCCTTCCTCGCTGCCACGC
CCTCCAACGACTCGTCCTCCGAGGGTGCCGGAGCATCACGGGAGACTGCC
TCCTGGCCCTCTCCCCAATATCTCTCTATCCCGCCCTCCAAACCATCGAC
GGTCGCCTACACCTCTTCCACCCTCACCACACTTGAGCACCTCCTTCTTC
CCTCCCTTCCTCCCTCCCTCCTCCCCCCCCCTCGGGGCACCCCCGCGACT
TCCCAGTTGGCGCTTGCACTCCAAGACGAGGAGGGAAGGAGGGAGGGAAG
GGTGGAAGGGTTAAAAGTACGGGTGCAATCATTAATCAAAGCCAATGATG
TGGGAGGCCTTGAGGCTTGTCTGGAGGAAGCGAGGCGTATGCCGCCAGTT
CAGTTCCGATCTGTAGTACGAGGATGGACGGGAGGGAGAGAGAACGGGAC
TGAAGCAGAGGCGAGCGCAGACGTGGGAGCTCGGCGTGGAGTGGAAACGG
AAGGGGACGTGAAGGAAACGAAGGAGGGAGGGAGGGAGGGAGGGATGGAG
GTATCCGTGGTGCAGCTGTTGCTGGACGGGCCTTACACCGACCACAAGGT
ACCTGCCTGCATATTGCGTGCCGTGTGGGTCATCTCGGCATTGCGCGGCG
CCTCGTTGCTGCTGGTGCTGCACGTGATGCTCGCACCCAAAACGGCTCTA
CTCCCCTCCATACTCTTGCCGCACACCAGCACCGGCACCATCGGGAGGAG
GAGGAGGAGGGAGGGAGGGAAGGAGGGAGGGGAGGGCCTTCGTTGGCGCG
ACTGCTGTTGTTTGGATTGGAAGAAGAGGGGGAAGAGGAGGAGAAGGAAG
AGGAAGGATGGAAGGAGGTGGTGGAGGTGGAGACAACGTTCAAGCGAATG
CAGCTGAAGGGAGGGGAAGGAGAAGGAGGAGAAGGGCCCGAAAAGAAAGA
AGGAGAAGGACGAGGGGAAGGGGAGGAGGTGGGACGATCCCGAGCGCAGA
AAGAAATTCGGGAGAAGGGGGAGGCAGCCTGTGTGCCAGCAGTAGCAGCA
GCAACCGCAGCAACCGCAGCAGTCGCAGCAGCAGCAGCAGCAGCAGTAGC
AGGAGCATCAGCAACATCAGCAGCCACTGCAGCTGCAGCTGCGGCAACAG
CAGCATCAGCATCAGCAGCGGCAGCCACAGCAAGAGTAGCATCAGCAGCA
GCAGCGACAGCAGCAGACACCTGCATCACAGCTGATTCCTTCCAC

protein sequence of jgi.p|Nanoce1779_2|185784

>mRNA_8194-protein ID=mRNA_8194-protein|Name=jgi.p|Nanoce1779_2|185784|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MSLIAHVSPTVASCPPFLAATPSNDSSSEGAGASRETASWPSPQYLSIPP
SKPSTVAYTSSTLTTLEHLLLPSLPPSLLPPPRGTPATSQLALALQDEEG
RREGRVEGLKVRVQSLIKANDVGGLEACLEEARRMPPVQFRSVVRGWTGG
RENGTEAEASADVGARRGVETEGDVKETKEGGREGGMEVSVVQLLLDGPY
TDHKVPACILRAVWVISALRGASLLLVLHVMLAPKTALLPSILLPHTSTG
TIGRRRRREGGKEGGEGLRWRDCCCLDWKKRGKRRRRKRKDGRRWWRWRQ
RSSECS*

mRNA from alignment at scaffold_23:7476..9369+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8194 ID=mRNA_8194|Name=jgi.p|Nanoce1779_2|185784|organism=Nannochloropsis oceanica|type=mRNA|length=1894bp|location=Sequence derived from alignment at scaffold_23:7476..9369+ (Nannochloropsis oceanica)
CCACCTTTCCTCCCCCCTCCGCCCTCCACCCTGCCTGCCTCCTCCTCGGC
CGTTACCACCGTTCTCTCCAACGATCCCCTCCTCCAACACCTTCTCACCT
GCTACCTCTCCCTTTCCGACCAGCTCCTCCACATGGCCACCGTCTCCCCA
CGCTGGCGTCGACTCATGCAATCCCAACCCGCCCTCCACCTCTCCCTTCC
CTCCCCGTCTGCCATCCCTGCCTCAACCTTCCTCTCCTCCCCAAGAGGCA
TCAGTGCCTACCTCTCCTCTGTCCGTCGGGCTGGGTTTGCAGCATGTCCT
ATCCCTCTCCTTTCCTTCCTCGCTCATCAATGACCCTGATTTGGCGGCTA
CCATTACCACCTTCGCGTCTACCCTGACCGGCATCGATGTCTCTTATTGC
CCATGTCTCACCGACCGTGGCCTCCTGCCCTCCCTTCCTCGCTGCCACGC
CCTCCAACGACTCGTCCTCCGAGGGTGCCGGAGCATCACGGGAGACTGCC
TCCTGGCCCTCTCCCCAATATCTCTCTATCCCGCCCTCCAAACCATCGAC
GGTCGCCTACACCTCTTCCACCCTCACCACACTTGAGCACCTCCTTCTTC
CCTCCCTTCCTCCCTCCCTCCTCCCCCCCCCTCGGGGCACCCCCGCGACT
TCCCAGTTGGCGCTTGCACTCCAAGACGAGGAGGGAAGGAGGGAGGGAAG
GGTGGAAGGGTTAAAAGTACGGGTGCAATCATTAATCAAAGCCAATGATG
TGGGAGGCCTTGAGGCTTGTCTGGAGGAAGCGAGGCGTATGCCGCCAGTT
CAGTTCCGATCTGTAGTACGAGGATGGACGGGAGGGAGAGAGAACGGGAC
TGAAGCAGAGGCGAGCGCAGACGTGGGAGCTCGGCGTGGAGTGGAAACGG
AAGGGGACGTGAAGGAAACGAAGGAGGGAGGGAGGGAGGGAGGGATGGAG
GTATCCGTGGTGCAGCTGTTGCTGGACGGGCCTTACACCGACCACAAGGT
GACGTTGTTAATGTTGGCTACATACCTGGCCAGAGAGGAGGTAGTAGACG
TCCTCCTCAAGGAAGGAGCAGAGGTGCAGGCCCGCGCATCCGGTGGTAGT
ACGTTTGTCCCCGCCCTCCTTCCCTCCCTCCCTCCCTCTGTCTCTTTCGA
GGGGCCTCCTCGTCGGCCTACCTCTGTCGGTCATCCCCTCACCCTCCCTC
TCTCCCTCTCCCTCTCTCCCTTTCCCCCTTCCTCCCTCCCTCCCTAGGTA
CCTGCCTGCATATTGCGTGCCGTGTGGGTCATCTCGGCATTGCGCGGCGC
CTCGTTGCTGCTGGTGCTGCACGTGATGCTCGCACCCAAAACGGCTCTAC
TCCCCTCCATACTCTTGCCGCACACCAGCACCGGCACCATCGGGAGGAGG
AGGAGGAGGGAGGGAGGGAAGGAGGGAGGGGAGGGCCTTCGTTGGCGCGA
CTGCTGTTGTTTGGATTGGAAGAAGAGGGGGAAGAGGAGGAGAAGGAAGA
GGAAGGATGGAAGGAGGTGGTGGAGGTGGAGACAACGTTCAAGCGAATGC
AGCTGAAGGGAGGGGAAGGAGAAGGAGGAGAAGGGCCCGAAAAGAAAGAA
GGAGAAGGACGAGGGGAAGGGGAGGAGGTGGGACGATCCCGAGCGCAGAA
AGAAATTCGGGAGAAGGGGGAGGCAGCCTGTGTGCCAGCAGTAGCAGCAG
CAACCGCAGCAACCGCAGCAGTCGCAGCAGCAGCAGCAGCAGCAGTAGCA
GGAGCATCAGCAACATCAGCAGCCACTGCAGCTGCAGCTGCGGCAACAGC
AGCATCAGCATCAGCAGCGGCAGCCACAGCAAGAGTAGCATCAGCAGCAG
CAGCGACAGCAGCAGACACCTGCATCACAGCTGATTCCTTCCAC

Coding sequence (CDS) from alignment at scaffold_23:7476..9369+

>mRNA_8194 ID=mRNA_8194|Name=jgi.p|Nanoce1779_2|185784|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at scaffold_23:7476..9369+ (Nannochloropsis oceanica)
ATGTCTCTTATTGCCCATGTCTCACCGACCGTGGCCTCCTGCCCTCCCTT
CCTCGCTGCCACGCCCTCCAACGACTCGTCCTCCGAGGGTGCCGGAGCAT
CACGGGAGACTGCCTCCTGGCCCTCTCCCCAATATCTCTCTATCCCGCCC
TCCAAACCATCGACGGTCGCCTACACCTCTTCCACCCTCACCACACTTGA
GCACCTCCTTCTTCCCTCCCTTCCTCCCTCCCTCCTCCCCCCCCCTCGGG
GCACCCCCGCGACTTCCCAGTTGGCGCTTGCACTCCAAGACGAGGAGGGA
AGGAGGGAGGGAAGGGTGGAAGGGTTAAAAGTACGGGTGCAATCATTAAT
CAAAGCCAATGATGTGGGAGGCCTTGAGGCTTGTCTGGAGGAAGCGAGGC
GTATGCCGCCAGTTCAGTTCCGATCTGTAGTACGAGGATGGACGGGAGGG
AGAGAGAACGGGACTGAAGCAGAGGCGAGCGCAGACGTGGGAGCTCGGCG
TGGAGTGGAAACGGAAGGGGACGTGAAGGAAACGAAGGAGGGAGGGAGGG
AGGGAGGGATGGAGGTATCCGTGGTGCAGCTGTTGCTGGACGGGCCTTAC
ACCGACCACAAGGTACCTGCCTGCATATTGCGTGCCGTGTGGGTCATCTC
GGCATTGCGCGGCGCCTCGTTGCTGCTGGTGCTGCACGTGATGCTCGCAC
CCAAAACGGCTCTACTCCCCTCCATACTCTTGCCGCACACCAGCACCGGC
ACCATCGGGAGGAGGAGGAGGAGGGAGGGAGGGAAGGAGGGAGGGGAGGG
CCTTCGTTGGCGCGACTGCTGTTGTTTGGATTGGAAGAAGAGGGGGAAGA
GGAGGAGAAGGAAGAGGAAGGATGGAAGGAGGTGGTGGAGGTGGAGACAA
CGTTCAAGCGAATGCAGCTGAATGTCTCTTATTGCCCATGTCTCACCGAC
CGTGGCCTCCTGCCCTCCCTTCCTCGCTGCCACGCCCTCCAACGACTCGT
CCTCCGAGGGTGCCGGAGCATCACGGGAGACTGCCTCCTGGCCCTCTCCC
CAATATCTCTCTATCCCGCCCTCCAAACCATCGACGGTCGCCTACACCTC
TTCCACCCTCACCACACTTGAGCACCTCCTTCTTCCCTCCCTTCCTCCCT
CCCTCCTCCCCCCCCCTCGGGGCACCCCCGCGACTTCCCAGTTGGCGCTT
GCACTCCAAGACGAGGAGGGAAGGAGGGAGGGAAGGGTGGAAGGGTTAAA
AGTACGGGTGCAATCATTAATCAAAGCCAATGATGTGGGAGGCCTTGAGG
CTTGTCTGGAGGAAGCGAGGCGTATGCCGCCAGTTCAGTTCCGATCTGTA
GTACGAGGATGGACGGGAGGGAGAGAGAACGGGACTGAAGCAGAGGCGAG
CGCAGACGTGGGAGCTCGGCGTGGAGTGGAAACGGAAGGGGACGTGAAGG
AAACGAAGGAGGGAGGGAGGGAGGGAGGGATGGAGGTATCCGTGGTGCAG
CTGTTGCTGGACGGGCCTTACACCGACCACAAGGTACCTGCCTGCATATT
GCGTGCCGTGTGGGTCATCTCGGCATTGCGCGGCGCCTCGTTGCTGCTGG
TGCTGCACGTGATGCTCGCACCCAAAACGGCTCTACTCCCCTCCATACTC
TTGCCGCACACCAGCACCGGCACCATCGGGAGGAGGAGGAGGAGGGAGGG
AGGGAAGGAGGGAGGGGAGGGCCTTCGTTGGCGCGACTGCTGTTGTTTGG
ATTGGAAGAAGAGGGGGAAGAGGAGGAGAAGGAAGAGGAAGGATGGAAGG
AGGTGGTGGAGGTGGAGACAACGTTCAAGCGAATGCAGCTGA

Synonyms

Publications