jgi.p|Nanoce1779_2|602034, mRNA_8441 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602034
Unique NamemRNA_8441
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1669
Alignment locationscaffold_24:273599..275439 -

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Properties
Property NameValue
TranscriptId602120
TrackFilteredModels2
ProteinId602034
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:273599..275439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602034gene_8441Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602034mRNA_8441-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8441CDS_8441Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8441 ID=mRNA_8441|Name=jgi.p|Nanoce1779_2|602034|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp
AACAGAGGTACACAATCAAGGTGCGAGCAAGCAATGTGCCGTCCTCCGGG
AGCAGGCTGGAGCCGAGCCTGCTTCACGGCCAAGGGCCGGTCCGCCCTGT
TGTTCATGGGGTGTCTATGCGCTTTTATCTACGTGGCCGTAATGCAGCCC
TACACTTTTCACTCTGTCCCGTCCTTGTCCTCCTCCTCCTCCTCTTTGTC
CAAACCGCAATTTGAGGCCTTGAGCCATAACGAAGTGGAGCCCACCGAAA
GGAGGAGTAGTAGCAGAGTTAGCACTGACGCGGTGCATTCCGATGATTGC
CTTGACGGAGACACCTTGATGCTCTTCCCTACGGCTCCACCAACCTATTT
AAAGGAACTAAATTCTTCGGCAGTATCTCCGAGACCACGACCCATCCCCT
TGCTAGCCACCAACCTTGACTACGACACCGAGGGGTTCCTCGCGCGCCTG
CTCGAAGGCTGGTCGGACGCCAAGGCTCGGCACAAACTCGTGGTGGCCGG
CGGGTGTGATCCTAGCACGATAGAGGCCGTGGCATTTGTAAGGAGGGAGC
ATCCGGATATTGCCGTGTTTCGGGAGAGGGAGATGTTGGGGTGTGCGCCG
GGGTGGAATAAAGCGTTGGATTACATGATGCATCACGAGGACGTGGAGTG
GTGCTTGATTTTTAACACAGATATATATGTGCCACCAGGGTCGCTTGATG
TCTTGGCGGAGGAGATCTGGGAAGAGTATGACAGGGATCCTGGCTTTTGC
CGAGGGTTTTTCAATGTCACGGCAGGACCAGACGCGGTAGTGTTTGCCTT
CACGAGGCGGGGGATGCAGATGCTGGGGAAGTTTGACGAGAACATATACC
CGGCTTATTATGAGGACCACGAGATGGATCTGCGGCATAATCGCTCCCAG
GGCCTGTGCACCACCCCTCCGACTCGCTTCCTGGCTGCATCTCTGCACCA
CGGCAAGCTTGACAGGGTCGACTACAAGAGCGGTACATCAATCTTGAGAG
ACAGGCTCAACGATGAGAAGAAAGCGCAACGCAGTAATCTCCGAGCCAAA
AAAAGAGAACGAGACCTGGCCAATCGTCTCGATAGAGGCTTCAAATCCTC
TAAGATGTACGTGAATGCCAAGTGGGGCTGTGACTCGGAGCAGGAAAACT
GTGTTTTTACACATCCGTTTAACAACGAGCAGCATGCCTTATCTTATTGG
CGGTTAGACTGGGGAAGGAGGGAATGTATCCTGAGGCAGGAACGGAAGGT
GAGAGCGTGTGAGTACACGTTGGAGAAGCCAGTCGGTCAGGAGGAGGAAA
GTAGAAGGGTGAGGTTTGGGAGCTGGTGGTTTGGACGGTAGAGGGGATGG
AGGGAAGGAGCAAAAGAGGAGGTGAGGGAAGAACCGCGCCTCGAGAGAGG
GAGGAAAAGGAAAAAAAGACGGTGCAGTCGGTGTCTCATCAACACGTCAC
GCGCGATGAGACGGAATGCCGAGGAGCGTAAATGTAAATCGATAGAAAGC
ACTTACTATTTGGATCAGACATACACTCTAACAAGAACAATATATGAACA
AATAAAGGGAAGAGGTGACGAAATCACAAGTAGAAACCGAGAAATGAATG
TCGTAGTAACAAAAATAAGGCGCGTGGGTGGAAAAGACAAGTCCCCTAGT
GATTCATCGGCTCGACTTA
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protein sequence of jgi.p|Nanoce1779_2|602034

>mRNA_8441-protein ID=mRNA_8441-protein|Name=jgi.p|Nanoce1779_2|602034|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MCRPPGAGWSRACFTAKGRSALLFMGCLCAFIYVAVMQPYTFHSVPSLSS
SSSSLSKPQFEALSHNEVEPTERRSSSRVSTDAVHSDDCLDGDTLMLFPT
APPTYLKELNSSAVSPRPRPIPLLATNLDYDTEGFLARLLEGWSDAKARH
KLVVAGGCDPSTIEAVAFVRREHPDIAVFREREMLGCAPGWNKALDYMMH
HEDVEWCLIFNTDIYVPPGSLDVLAEEIWEEYDRDPGFCRGFFNVTAGPD
AVVFAFTRRGMQMLGKFDENIYPAYYEDHEMDLRHNRSQGLCTTPPTRFL
AASLHHGKLDRVDYKSGTSILRDRLNDEKKAQRSNLRAKKRERDLANRLD
RGFKSSKMYVNAKWGCDSEQENCVFTHPFNNEQHALSYWRLDWGRRECIL
RQERKVRACEYTLEKPVGQEEESRRVRFGSWWFGR*
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mRNA from alignment at scaffold_24:273599..275439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8441 ID=mRNA_8441|Name=jgi.p|Nanoce1779_2|602034|organism=Nannochloropsis oceanica|type=mRNA|length=1841bp|location=Sequence derived from alignment at scaffold_24:273599..275439- (Nannochloropsis oceanica)
AACAGAGGTACACAATCAAGGTGCGAGCAAGCAATGTGCCGTCCTCCGGG
AGCAGGCTGGAGCCGAGCCTGCTTCACGGCCAAGGGCCGGTCCGCCCTGT
TGTTCATGGGGTGTCTATGCGCTTTTATCTACGTGGCCGTAATGCAGCCC
TACACTTTTCACTCTGTCCCGTCCTTGTCCTCCTCCTCCTCCTCTTTGTC
CAAACCGCAATTTGAGGCCTTGAGCCATAACGAAGTGGAGCCCACCGAAA
GGAGGAGTAGTAGCAGAGTTAGCACTGACGCGGTGCATTCCGATGATTGC
CTTGACGGAGACACCTTGATGCTCTTCCCTACGGCTCCACCAACCTATTT
AAAGGAACTAAATTCTTCGGCAGTATCTCCGAGACCACGACCCATCCCCT
TGCTAGCCACCAACCTTGACTACGACACCGAGGGGTTCCTCGCGCGCCTG
CTCGAAGGCTGGTCGGACGCCAAGGCTCGGCACAAACTCGTGGTGGCCGG
CGGGTGTGATCCTAGCACGATAGAGGCCGTGGCATTTGTAAGGAGGGAGC
ATCCGGATATTGCCGTGTTTCGGGAGAGGGAGATGTTGGGGTGTGCGCCG
GGGTGGAATAAAGCGTTGGATTACATGATGCATCACGAGGACGTGGAGTG
GTGCTTGATTTTTAACACAGATATATATGTGCCACCAGGGTCGCTTGATG
TCTTGGCGGAGGAGATCTGGGAAGAGTATGACAGGGATCCTGGCTTTTGC
CGAGGGTTTTTCAATGTCACGGCAGGACCAGACGCGGTAGTGTTTGCCTT
CACGAGGCGGGGGATGCAGATGCTGGGGAAGTTTGACGAGAACATATACC
CGGCTTATTATGAGGTATGGAATTTCCTTCCTATCTTCCTCCTCCACCAT
CATCTCAGCACCAGCTCGTTGAGCCGCCAAGATGACACCATATCTCTCTC
GATCTCCTTCACGTTTTACCATGTCAAAATACCCGACTTCTCACCCTCCC
TCCCTCCCACCTTCCCTCCTAACTCCTCTTTTCAAGGACCACGAGATGGA
TCTGCGGCATAATCGCTCCCAGGGCCTGTGCACCACCCCTCCGACTCGCT
TCCTGGCTGCATCTCTGCACCACGGCAAGCTTGACAGGGTCGACTACAAG
AGCGGTACATCAATCTTGAGAGACAGGCTCAACGATGAGAAGAAAGCGCA
ACGCAGTAATCTCCGAGCCAAAAAAAGAGAACGAGACCTGGCCAATCGTC
TCGATAGAGGCTTCAAATCCTCTAAGATGTACGTGAATGCCAAGTGGGGC
TGTGACTCGGAGCAGGAAAACTGTGTTTTTACACATCCGTTTAACAACGA
GCAGCATGCCTTATCTTATTGGCGGTTAGACTGGGGAAGGAGGGAATGTA
TCCTGAGGCAGGAACGGAAGGTGAGAGCGTGTGAGTACACGTTGGAGAAG
CCAGTCGGTCAGGAGGAGGAAAGTAGAAGGGTGAGGTTTGGGAGCTGGTG
GTTTGGACGGTAGAGGGGATGGAGGGAAGGAGCAAAAGAGGAGGTGAGGG
AAGAACCGCGCCTCGAGAGAGGGAGGAAAAGGAAAAAAAGACGGTGCAGT
CGGTGTCTCATCAACACGTCACGCGCGATGAGACGGAATGCCGAGGAGCG
TAAATGTAAATCGATAGAAAGCACTTACTATTTGGATCAGACATACACTC
TAACAAGAACAATATATGAACAAATAAAGGGAAGAGGTGACGAAATCACA
AGTAGAAACCGAGAAATGAATGTCGTAGTAACAAAAATAAGGCGCGTGGG
TGGAAAAGACAAGTCCCCTAGTGATTCATCGGCTCGACTTA
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Coding sequence (CDS) from alignment at scaffold_24:273599..275439-

>mRNA_8441 ID=mRNA_8441|Name=jgi.p|Nanoce1779_2|602034|organism=Nannochloropsis oceanica|type=CDS|length=2616bp|location=Sequence derived from alignment at scaffold_24:273599..275439- (Nannochloropsis oceanica)
GACCACGAGATGGATCTGCGGCATAATCGCTCCCAGGGCCTGTGCACCAC
CCCTCCGACTCGCTTCCTGGCTGCATCTCTGCACCACGGCAAGCTTGACA
GGGTCGACTACAAGAGCGGTACATCAATCTTGAGAGACAGGCTCAACGAT
GAGAAGAAAGCGCAACGCAGTAATCTCCGAGCCAAAAAAAGAGAACGAGA
CCTGGCCAATCGTCTCGATAGAGGCTTCAAATCCTCTAAGATGTACGTGA
ATGCCAAGTGGGGCTGTGACTCGGAGCAGGAAAACTGTGTTTTTACACAT
CCGTTTAACAACGAGCAGCATGCCTTATCTTATTGGCGGTTAGACTGGGG
AAGGAGGGAATGTATCCTGAGGCAGGAACGGAAGGTGAGAGCGTGTGAGT
ACACGTTGGAGAAGCCAGTCGGTCAGGAGGAGGAAAGTAGAAGGGTGAGG
TTTGGGAGCTGGTGGTTTGGACGGTAGATGTGCCGTCCTCCGGGAGCAGG
CTGGAGCCGAGCCTGCTTCACGGCCAAGGGCCGGTCCGCCCTGTTGTTCA
TGGGGTGTCTATGCGCTTTTATCTACGTGGCCGTAATGCAGCCCTACACT
TTTCACTCTGTCCCGTCCTTGTCCTCCTCCTCCTCCTCTTTGTCCAAACC
GCAATTTGAGGCCTTGAGCCATAACGAAGTGGAGCCCACCGAAAGGAGGA
GTAGTAGCAGAGTTAGCACTGACGCGGTGCATTCCGATGATTGCCTTGAC
GGAGACACCTTGATGCTCTTCCCTACGGCTCCACCAACCTATTTAAAGGA
ACTAAATTCTTCGGCAGTATCTCCGAGACCACGACCCATCCCCTTGCTAG
CCACCAACCTTGACTACGACACCGAGGGGTTCCTCGCGCGCCTGCTCGAA
GGCTGGTCGGACGCCAAGGCTCGGCACAAACTCGTGGTGGCCGGCGGGTG
TGATCCTAGCACGATAGAGGCCGTGGCATTTGTAAGGAGGGAGCATCCGG
ATATTGCCGTGTTTCGGGAGAGGGAGATGTTGGGGTGTGCGCCGGGGTGG
AATAAAGCGTTGGATTACATGATGCATCACGAGGACGTGGAGTGGTGCTT
GATTTTTAACACAGATATATATGTGCCACCAGGGTCGCTTGATGTCTTGG
CGGAGGAGATCTGGGAAGAGTATGACAGGGATCCTGGCTTTTGCCGAGGG
TTTTTCAATGTCACGGCAGGACCAGACGCGGTAGTGTTTGCCTTCACGAG
GCGGGGGATGCAGATGCTGGGGAAGTTTGACGAGAACATATACCCGGCTT
ATTATGAGGACCACGAGATGGATCTGCGGCATAATCGCTCCCAGGGCCTG
TGCACCACCCCTCCGACTCGCTTCCTGGCTGCATCTCTGCACCACGGCAA
GCTTGACAGGGTCGACTACAAGAGCGGTACATCAATCTTGAGAGACAGGC
TCAACGATGAGAAGAAAGCGCAACGCAGTAATCTCCGAGCCAAAAAAAGA
GAACGAGACCTGGCCAATCGTCTCGATAGAGGCTTCAAATCCTCTAAGAT
GTACGTGAATGCCAAGTGGGGCTGTGACTCGGAGCAGGAAAACTGTGTTT
TTACACATCCGTTTAACAACGAGCAGCATGCCTTATCTTATTGGCGGTTA
GACTGGGGAAGGAGGGAATGTATCCTGAGGCAGGAACGGAAGGTGAGAGC
GTGTGAGTACACGTTGGAGAAGCCAGTCGGTCAGGAGGAGGAAAGTAGAA
GGGTGAGGTTTGGGAGCTGGTGGTTTGGACGGTAGATGTGCCGTCCTCCG
GGAGCAGGCTGGAGCCGAGCCTGCTTCACGGCCAAGGGCCGGTCCGCCCT
GTTGTTCATGGGGTGTCTATGCGCTTTTATCTACGTGGCCGTAATGCAGC
CCTACACTTTTCACTCTGTCCCGTCCTTGTCCTCCTCCTCCTCCTCTTTG
TCCAAACCGCAATTTGAGGCCTTGAGCCATAACGAAGTGGAGCCCACCGA
AAGGAGGAGTAGTAGCAGAGTTAGCACTGACGCGGTGCATTCCGATGATT
GCCTTGACGGAGACACCTTGATGCTCTTCCCTACGGCTCCACCAACCTAT
TTAAAGGAACTAAATTCTTCGGCAGTATCTCCGAGACCACGACCCATCCC
CTTGCTAGCCACCAACCTTGACTACGACACCGAGGGGTTCCTCGCGCGCC
TGCTCGAAGGCTGGTCGGACGCCAAGGCTCGGCACAAACTCGTGGTGGCC
GGCGGGTGTGATCCTAGCACGATAGAGGCCGTGGCATTTGTAAGGAGGGA
GCATCCGGATATTGCCGTGTTTCGGGAGAGGGAGATGTTGGGGTGTGCGC
CGGGGTGGAATAAAGCGTTGGATTACATGATGCATCACGAGGACGTGGAG
TGGTGCTTGATTTTTAACACAGATATATATGTGCCACCAGGGTCGCTTGA
TGTCTTGGCGGAGGAGATCTGGGAAGAGTATGACAGGGATCCTGGCTTTT
GCCGAGGGTTTTTCAATGTCACGGCAGGACCAGACGCGGTAGTGTTTGCC
TTCACGAGGCGGGGGATGCAGATGCTGGGGAAGTTTGACGAGAACATATA
CCCGGCTTATTATGAG
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Synonyms
Publications