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Properties
| Property Name | Value |
|---|
| TranscriptId | 200349 |
| Track | FilteredModels2 |
| ProteinId | 200263 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:5528..7556 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8035 ID=mRNA_8035|Name=jgi.p|Nanoce1779_2|200263|organism=Nannochloropsis oceanica|type=mRNA|length=1868bp
CCCACTCAACCCTCCTCCTTCTCTTCCCCCCTCCTTCCCTCCCTCCTTCC
CTCCCTCCCTCCCTCCAGCTACGGCGTGTTCTTTTCCTCGCAGATGATCA
TGGGCAGCGGGTGGGTCGACGTCATGCCCATCTCTGAGTTTGGGGTCTGG
TTCTCGCTTTTCTATGCGTTGATGGGCAGTATCTTAATTTACCATGCTTT
GGGAGACTTGGCCTCCATCCCTCTGACCCTGCGTCAAAGTCTGTTTGAGG
CAGAGGTGCTGTCGCAGTGGGGAGACCATCTAACGGAGGATAAGCTGTAC
AGTCTTTCAAGAAGAGCCAGTGAAATCACAGCCGCGGCCATGTCCTCGTC
CCCCTTGCGAAGGGCCTCCGCGCTCCCGGCGAAGATGGGAGGGACGGCGG
TGGGGAATGTGGGGCGAAATGACGAGCCGTTGTTGTATCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCGACAACAGCTGCTAGGGGAGAAAAGGCAATT
GCATTCGTTGATGCTTCAGCGGCAGACTGCCGGGCAGCATTCCCTCGAGG
AAGTACCGACAGCTGTAGCAGCTGCAGCAGCAGCAGCTGCAGCAGCCAAG
TCCAAGTCTTCCCCCTCTTCATCATCCTCACATGTAGCAGGGACGCCCCC
TGCCGTCACGTTCTCTTTACTACCTCCCTCCTTCCGTCCTGCTGATGTAG
CCAGTGGTGGTGGCGGTGATGGTGGTAGAGAAGGAGCAGCAGGGAGGAAG
GGAGGGAGGGAGGGAGGGAGAGAGGGAGGGCATGGTACCGCCAGCAGCAT
GACAGAAGGCACATGTGCGGCTAAAGCCCCTTTCATATCTTCTCCAAACG
ATTCCTCACCCTCTTCCTTCCCGTCTTTCTCCTCCTCCACCATCCACCCT
TTCCCCTCCTCTTTTATCTCCTCCTCCCCCTCCTCCTCATCCTCTTCCTC
CTCTGCTTCTGATGCTCTCGGGGACGCAGCTGTGACAGCGGTCCTTACCC
CTCCCTACCTCGCCACTAATTCGGCCTCTCCCTCCCTCTTCTCTACCTGC
TCCTCCATTGCTTCCACCTCTCTTCCCCGTCTTTCGTCCGTGAACAGCAG
CAGCAGCGGCAACAGCCGCATGAAACATAACGGGACAACAGCTGCAACAG
CTGCAACAGCAGCAACAGCAGCAACAGCTACACTAGCCCCAGCACTACCA
GCACCAGCACCGGCCGTTGGGACAGCCGAAAAGAAGAAACCGTCCACAGC
CGTTACGAGGGAGGAATTTATCATCTCCATGATGCTTCTCCTGGGGCGCG
TGGATATGATGCACGTCCGCGAAGCCCAGAGGGTTTTCGATCACCTCGAC
AAGGACAAAACGGGTATCTTAAATGAGACAGACGTTGTCAAGAAGGTGGA
GCAACAGACGGGCCTGAGGTATGACTCAGCGCGCTATCGCATGGGACACG
GTGCCAAGGACAGTAAAAAATATGCGTCGCCCAGACGCCTGGCAGCCTTG
AAGAAGGGGGGAGAGGGAGGGGGAACGATGGGTGCGGCGGGTAGTAGCAG
CAGCAGCAACATGCTTGGGACGTCACCGATTAAACCGAAAGAAGGAGGAT
GGGGAGAAGTAGGAGGAGGCAGAGAAGGAGGGGATGAGGGCAGGTTGCAC
TCGTTATCTTCTGTCTCTGCGCCCTCTTCCTCGACCTCGCCTTGGCGGTG
GCGGCAGCAAAAGCAACAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGC
AGCCGCCGCAGGGAGGGGGAGGGGAAGGGGGGGAAGAATATAAGAAAGGG
TAGAGCAGAACATGGAATGTGCTAGGGTGTGTGGTAGGAAAAGTAAAGGG
AATGGAGGAGAGGAAGGT back to topprotein sequence of jgi.p|Nanoce1779_2|200263 >mRNA_8035-protein ID=mRNA_8035-protein|Name=jgi.p|Nanoce1779_2|200263|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MIMGSGWVDVMPISEFGVWFSLFYALMGSILIYHALGDLASIPLTLRQSL
FEAEVLSQWGDHLTEDKLYSLSRRASEITAAAMSSSPLRRASALPAKMGG
TAVGNVGRNDEPLLYQQQQQQQQQQRQQLLGEKRQLHSLMLQRQTAGQHS
LEEVPTAVAAAAAAAAAAKSKSSPSSSSSHVAGTPPAVTFSLLPPSFRPA
DVASGGGGDGGREGAAGRKGGREGGREGGHGTASSMTEGTCAAKAPFISS
PNDSSPSSFPSFSSSTIHPFPSSFISSSPSSSSSSSSASDALGDAAVTAV
LTPPYLATNSASPSLFSTCSSIASTSLPRLSSVNSSSSGNSRMKHNGTTA
ATAATAATAATATLAPALPAPAPAVGTAEKKKPSTAVTREEFIISMMLLL
GRVDMMHVREAQRVFDHLDKDKTGILNETDVVKKVEQQTGLRYDSARYRM
GHGAKDSKKYASPRRLAALKKGGEGGGTMGAAGSSSSSNMLGTSPIKPKE
GGWGEVGGGREGGDEGRLHSLSSVSAPSSSTSPWRWRQQKQQQPQQQPQQ
QQQPPQGGGGEGGEEYKKG* back to topmRNA from alignment at scaffold_25:5528..7556- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8035 ID=mRNA_8035|Name=jgi.p|Nanoce1779_2|200263|organism=Nannochloropsis oceanica|type=mRNA|length=2029bp|location=Sequence derived from alignment at scaffold_25:5528..7556- (Nannochloropsis oceanica)
CCCACTCAACCCTCCTCCTTCTCTTCCCCCCTCCTTCCCTCCCTCCTTCC
CTCCCTCCCTCCCTCCAGCTACGGCGTGTTCTTTTCCTCGCAGATGATCA
TGGGCAGCGGGTGGGTCGACGTCATGCCCATCTCTGAGTTTGGGGTCTGG
TTCTCGCTTTTCTATGCGTTGATGGGCAGTATCTTAATTTACCATGCTTT
GGGAGACTTGGCCTCCATCCCTCTGACCCTGCGTCAAAGTCTGTTTGAGG
CAGAGGTGCTGTCGCAGTGGGGAGACCATCTAACGGGTGCGTATATTGAG
TCCATGCCCGCCTATCTTTCGCCCTTCCTGTCGACTTGTCTCTCTCAAAA
CCCTCCTCTTCACTCCTACTGCTTGCTTACCCCTTTTTCGTCATTCCTTC
CTTCCCTCCTTCCCTTCCACCCTCCCTCCCACCCTCCCGGCGCTCAGAGG
ATAAGCTGTACAGTCTTTCAAGAAGAGCCAGTGAAATCACAGCCGCGGCC
ATGTCCTCGTCCCCCTTGCGAAGGGCCTCCGCGCTCCCGGCGAAGATGGG
AGGGACGGCGGTGGGGAATGTGGGGCGAAATGACGAGCCGTTGTTGTATC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGCTGCTAGGGGAG
AAAAGGCAATTGCATTCGTTGATGCTTCAGCGGCAGACTGCCGGGCAGCA
TTCCCTCGAGGAAGTACCGACAGCTGTAGCAGCTGCAGCAGCAGCAGCTG
CAGCAGCCAAGTCCAAGTCTTCCCCCTCTTCATCATCCTCACATGTAGCA
GGGACGCCCCCTGCCGTCACGTTCTCTTTACTACCTCCCTCCTTCCGTCC
TGCTGATGTAGCCAGTGGTGGTGGCGGTGATGGTGGTAGAGAAGGAGCAG
CAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGCATGGTACC
GCCAGCAGCATGACAGAAGGCACATGTGCGGCTAAAGCCCCTTTCATATC
TTCTCCAAACGATTCCTCACCCTCTTCCTTCCCGTCTTTCTCCTCCTCCA
CCATCCACCCTTTCCCCTCCTCTTTTATCTCCTCCTCCCCCTCCTCCTCA
TCCTCTTCCTCCTCTGCTTCTGATGCTCTCGGGGACGCAGCTGTGACAGC
GGTCCTTACCCCTCCCTACCTCGCCACTAATTCGGCCTCTCCCTCCCTCT
TCTCTACCTGCTCCTCCATTGCTTCCACCTCTCTTCCCCGTCTTTCGTCC
GTGAACAGCAGCAGCAGCGGCAACAGCCGCATGAAACATAACGGGACAAC
AGCTGCAACAGCTGCAACAGCAGCAACAGCAGCAACAGCTACACTAGCCC
CAGCACTACCAGCACCAGCACCGGCCGTTGGGACAGCCGAAAAGAAGAAA
CCGTCCACAGCCGTTACGAGGGAGGAATTTATCATCTCCATGATGCTTCT
CCTGGGGCGCGTGGATATGATGCACGTCCGCGAAGCCCAGAGGGTTTTCG
ATCACCTCGACAAGGACAAAACGGGTATCTTAAATGAGACAGACGTTGTC
AAGAAGGTGGAGCAACAGACGGGCCTGAGGTATGACTCAGCGCGCTATCG
CATGGGACACGGTGCCAAGGACAGTAAAAAATATGCGTCGCCCAGACGCC
TGGCAGCCTTGAAGAAGGGGGGAGAGGGAGGGGGAACGATGGGTGCGGCG
GGTAGTAGCAGCAGCAGCAACATGCTTGGGACGTCACCGATTAAACCGAA
AGAAGGAGGATGGGGAGAAGTAGGAGGAGGCAGAGAAGGAGGGGATGAGG
GCAGGTTGCACTCGTTATCTTCTGTCTCTGCGCCCTCTTCCTCGACCTCG
CCTTGGCGGTGGCGGCAGCAAAAGCAACAGCAGCCGCAGCAGCAGCCGCA
GCAGCAGCAGCAGCCGCCGCAGGGAGGGGGAGGGGAAGGGGGGGAAGAAT
ATAAGAAAGGGTAGAGCAGAACATGGAATGTGCTAGGGTGTGTGGTAGGA
AAAGTAAAGGGAATGGAGGAGAGGAAGGT back to topCoding sequence (CDS) from alignment at scaffold_25:5528..7556- >mRNA_8035 ID=mRNA_8035|Name=jgi.p|Nanoce1779_2|200263|organism=Nannochloropsis oceanica|type=CDS|length=3420bp|location=Sequence derived from alignment at scaffold_25:5528..7556- (Nannochloropsis oceanica)
AGGATAAGCTGTACAGTCTTTCAAGAAGAGCCAGTGAAATCACAGCCGCG
GCCATGTCCTCGTCCCCCTTGCGAAGGGCCTCCGCGCTCCCGGCGAAGAT
GGGAGGGACGGCGGTGGGGAATGTGGGGCGAAATGACGAGCCGTTGTTGT
ATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACAGCTGCTAGGG
GAGAAAAGGCAATTGCATTCGTTGATGCTTCAGCGGCAGACTGCCGGGCA
GCATTCCCTCGAGGAAGTACCGACAGCTGTAGCAGCTGCAGCAGCAGCAG
CTGCAGCAGCCAAGTCCAAGTCTTCCCCCTCTTCATCATCCTCACATGTA
GCAGGGACGCCCCCTGCCGTCACGTTCTCTTTACTACCTCCCTCCTTCCG
TCCTGCTGATGTAGCCAGTGGTGGTGGCGGTGATGGTGGTAGAGAAGGAG
CAGCAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGGCATGGT
ACCGCCAGCAGCATGACAGAAGGCACATGTGCGGCTAAAGCCCCTTTCAT
ATCTTCTCCAAACGATTCCTCACCCTCTTCCTTCCCGTCTTTCTCCTCCT
CCACCATCCACCCTTTCCCCTCCTCTTTTATCTCCTCCTCCCCCTCCTCC
TCATCCTCTTCCTCCTCTGCTTCTGATGCTCTCGGGGACGCAGCTGTGAC
AGCGGTCCTTACCCCTCCCTACCTCGCCACTAATTCGGCCTCTCCCTCCC
TCTTCTCTACCTGCTCCTCCATTGCTTCCACCTCTCTTCCCCGTCTTTCG
TCCGTGAACAGCAGCAGCAGCGGCAACAGCCGCATGAAACATAACGGGAC
AACAGCTGCAACAGCTGCAACAGCAGCAACAGCAGCAACAGCTACACTAG
CCCCAGCACTACCAGCACCAGCACCGGCCGTTGGGACAGCCGAAAAGAAG
AAACCGTCCACAGCCGTTACGAGGGAGGAATTTATCATCTCCATGATGCT
TCTCCTGGGGCGCGTGGATATGATGCACGTCCGCGAAGCCCAGAGGGTTT
TCGATCACCTCGACAAGGACAAAACGGGTATCTTAAATGAGACAGACGTT
GTCAAGAAGGTGGAGCAACAGACGGGCCTGAGGTATGACTCAGCGCGCTA
TCGCATGGGACACGGTGCCAAGGACAGTAAAAAATATGCGTCGCCCAGAC
GCCTGGCAGCCTTGAAGAAGGGGGGAGAGGGAGGGGGAACGATGGGTGCG
GCGGGTAGTAGCAGCAGCAGCAACATGCTTGGGACGTCACCGATTAAACC
GAAAGAAGGAGGATGGGGAGAAGTAGGAGGAGGCAGAGAAGGAGGGGATG
AGGGCAGGTTGCACTCGTTATCTTCTGTCTCTGCGCCCTCTTCCTCGACC
TCGCCTTGGCGGTGGCGGCAGCAAAAGCAACAGCAGCCGCAGCAGCAGCC
GCAGCAGCAGCAGCAGCCGCCGCAGGGAGGGGGAGGGGAAGGGGGGGAAG
AATATAAGAAAGGGTAGATGATCATGGGCAGCGGGTGGGTCGACGTCATG
CCCATCTCTGAGTTTGGGGTCTGGTTCTCGCTTTTCTATGCGTTGATGGG
CAGTATCTTAATTTACCATGCTTTGGGAGACTTGGCCTCCATCCCTCTGA
CCCTGCGTCAAAGTCTGTTTGAGGCAGAGGTGCTGTCGCAGTGGGGAGAC
CATCTAACGGAGGATAAGCTGTACAGTCTTTCAAGAAGAGCCAGTGAAAT
CACAGCCGCGGCCATGTCCTCGTCCCCCTTGCGAAGGGCCTCCGCGCTCC
CGGCGAAGATGGGAGGGACGGCGGTGGGGAATGTGGGGCGAAATGACGAG
CCGTTGTTGTATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAACA
GCTGCTAGGGGAGAAAAGGCAATTGCATTCGTTGATGCTTCAGCGGCAGA
CTGCCGGGCAGCATTCCCTCGAGGAAGTACCGACAGCTGTAGCAGCTGCA
GCAGCAGCAGCTGCAGCAGCCAAGTCCAAGTCTTCCCCCTCTTCATCATC
CTCACATGTAGCAGGGACGCCCCCTGCCGTCACGTTCTCTTTACTACCTC
CCTCCTTCCGTCCTGCTGATGTAGCCAGTGGTGGTGGCGGTGATGGTGGT
AGAGAAGGAGCAGCAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGAGAGGG
AGGGCATGGTACCGCCAGCAGCATGACAGAAGGCACATGTGCGGCTAAAG
CCCCTTTCATATCTTCTCCAAACGATTCCTCACCCTCTTCCTTCCCGTCT
TTCTCCTCCTCCACCATCCACCCTTTCCCCTCCTCTTTTATCTCCTCCTC
CCCCTCCTCCTCATCCTCTTCCTCCTCTGCTTCTGATGCTCTCGGGGACG
CAGCTGTGACAGCGGTCCTTACCCCTCCCTACCTCGCCACTAATTCGGCC
TCTCCCTCCCTCTTCTCTACCTGCTCCTCCATTGCTTCCACCTCTCTTCC
CCGTCTTTCGTCCGTGAACAGCAGCAGCAGCGGCAACAGCCGCATGAAAC
ATAACGGGACAACAGCTGCAACAGCTGCAACAGCAGCAACAGCAGCAACA
GCTACACTAGCCCCAGCACTACCAGCACCAGCACCGGCCGTTGGGACAGC
CGAAAAGAAGAAACCGTCCACAGCCGTTACGAGGGAGGAATTTATCATCT
CCATGATGCTTCTCCTGGGGCGCGTGGATATGATGCACGTCCGCGAAGCC
CAGAGGGTTTTCGATCACCTCGACAAGGACAAAACGGGTATCTTAAATGA
GACAGACGTTGTCAAGAAGGTGGAGCAACAGACGGGCCTGAGGTATGACT
CAGCGCGCTATCGCATGGGACACGGTGCCAAGGACAGTAAAAAATATGCG
TCGCCCAGACGCCTGGCAGCCTTGAAGAAGGGGGGAGAGGGAGGGGGAAC
GATGGGTGCGGCGGGTAGTAGCAGCAGCAGCAACATGCTTGGGACGTCAC
CGATTAAACCGAAAGAAGGAGGATGGGGAGAAGTAGGAGGAGGCAGAGAA
GGAGGGGATGAGGGCAGGTTGCACTCGTTATCTTCTGTCTCTGCGCCCTC
TTCCTCGACCTCGCCTTGGCGGTGGCGGCAGCAAAAGCAACAGCAGCCGC
AGCAGCAGCCGCAGCAGCAGCAGCAGCCGCCGCAGGGAGGGGGAGGGGAA
GGGGGGGAAGAATATAAGAAAGGGTAGATGATCATGGGCAGCGGGTGGGT
CGACGTCATGCCCATCTCTGAGTTTGGGGTCTGGTTCTCGCTTTTCTATG
CGTTGATGGGCAGTATCTTAATTTACCATGCTTTGGGAGACTTGGCCTCC
ATCCCTCTGACCCTGCGTCAAAGTCTGTTTGAGGCAGAGGTGCTGTCGCA
GTGGGGAGACCATCTAACGG back to top
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