jgi.p|Nanoce1779_2|642142, mRNA_8823 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642142
Unique NamemRNA_8823
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length309
Alignment locationscaffold_28:254149..254630 +

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Properties
Property NameValue
TranscriptId642228
TrackFilteredModels2
ProteinId642142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_28supercontigscaffold_28:254149..254630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642142gene_8823Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642142mRNA_8823-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8823CDS_8823Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8823 ID=mRNA_8823|Name=jgi.p|Nanoce1779_2|642142|organism=Nannochloropsis oceanica|type=mRNA|length=309bp
ATGGCAGGGGCGGATGACTTTAGCCCACCAGCGGCAACGGTCATTGATCA
GCAGGCGGAGAGGGGGGTCGCCAAAAGCGCGCGGAAAGACGAGGCGATGC
GCTCCCCAAAAAAGCGAGGAAACTGGAGGGAGGAGGGACAGGAGGAAGAG
ACAAAAGACCAGGAGGAGCGCCAGGATGGAGATTATGACGAGAGGAAACC
AAAATTTACTGAAGAGGACATCCGGGACGACAGTGGGAAAGCGGAGGGGC
GTCATTTTTTCTCGGCTGCTTTTGCTGACTTGCACGGACTCTGGGAAGTC
CCCATTTAA
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protein sequence of jgi.p|Nanoce1779_2|642142

>mRNA_8823-protein ID=mRNA_8823-protein|Name=jgi.p|Nanoce1779_2|642142|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MAGADDFSPPAATVIDQQAERGVAKSARKDEAMRSPKKRGNWREEGQEEE
TKDQEERQDGDYDERKPKFTEEDIRDDSGKAEGRHFFSAAFADLHGLWEV
PI*
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mRNA from alignment at scaffold_28:254149..254630+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8823 ID=mRNA_8823|Name=jgi.p|Nanoce1779_2|642142|organism=Nannochloropsis oceanica|type=mRNA|length=482bp|location=Sequence derived from alignment at scaffold_28:254149..254630+ (Nannochloropsis oceanica)
ATGGCAGGGGCGGATGACTTTAGCCCACCAGCGGCAACGGTCATTGATCA
GCAGGCGGAGAGGGGGGTCGCCAAAAGCGCGCGGAAAGACGAGTACACAT
TGCCTGCAACCACATGCAAGACTGCCGCTGGTGCAAGATCAAGAATCATG
GGAAATTTCTGCGGCTGCTGGCAGACTGCGGTGCATGTAGACTTAAACAC
GAGACGGCAGTAGCCCGGGCGGCGGGTGAATGCGGGTTGAGTACGTTGCC
GGCCCACTCTCCCAGGGCGATGCGCTCCCCAAAAAAGCGAGGAAACTGGA
GGGAGGAGGGACAGGAGGAAGAGACAAAAGACCAGGAGGAGCGCCAGGAT
GGAGATTATGACGAGAGGAAACCAAAATTTACTGAAGAGGACATCCGGGA
CGACAGTGGGAAAGCGGAGGGGCGTCATTTTTTCTCGGCTGCTTTTGCTG
ACTTGCACGGACTCTGGGAAGTCCCCATTTAA
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Coding sequence (CDS) from alignment at scaffold_28:254149..254630+

>mRNA_8823 ID=mRNA_8823|Name=jgi.p|Nanoce1779_2|642142|organism=Nannochloropsis oceanica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_28:254149..254630+ (Nannochloropsis oceanica)
ATGGCAGGGGCGGATGACTTTAGCCCACCAGCGGCAACGGTCATTGATCA
GCAGGCGGAGAGGGGGGTCGCCAAAAGCGCGCGGAAAGACGAGGCGATGC
GCTCCCCAAAAAAGCGAGGAAACTGGAGGGAGGAGGGACAGGAGGAAGAG
ACAAAAGACCAGGAGGAGCGCCAGGATGGAGATTATGACGAGAGGAAACC
AAAATTTACTGAAGAGGACATCCGGGACGACAGTGGGAAAGCGGAGGGGC
GTCATTTTTTCTCGGCTGCTTTTGCTGACTTGCACGGACTCTGGGAAGTC
CCCATTTAAATGGCAGGGGCGGATGACTTTAGCCCACCAGCGGCAACGGT
CATTGATCAGCAGGCGGAGAGGGGGGTCGCCAAAAGCGCGCGGAAAGACG
AGGCGATGCGCTCCCCAAAAAAGCGAGGAAACTGGAGGGAGGAGGGACAG
GAGGAAGAGACAAAAGACCAGGAGGAGCGCCAGGATGGAGATTATGACGA
GAGGAAACCAAAATTTACTGAAGAGGACATCCGGGACGACAGTGGGAAAG
CGGAGGGGCGTCATTTTTTCTCGGCTGCTTTTGCTGACTTGCACGGACTC
TGGGAAGTCCCCATTTAA
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Synonyms
Publications