jgi.p|Nanoce1779_2|244833, mRNA_547 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|244833
Unique NamemRNA_547
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length967
Alignment locationscaffold_3:1322231..1323662 -

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Properties
Property NameValue
TranscriptId244919
TrackFilteredModels2
ProteinId244833
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1322231..1323662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|244833gene_547Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|244833mRNA_547-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_547CDS_547Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_547 ID=mRNA_547|Name=jgi.p|Nanoce1779_2|244833|organism=Nannochloropsis oceanica|type=mRNA|length=967bp
CTTCCCTCGATCCCTTCCCACTTCCCTCCCGCCACCCTAACAGAAGGCCA
CGCCCGAGGCTGCCCTCGTGAAGATGGCCGCCAAGCCCAAGACTACCAAG
CCGAAGGCTGTGGCCAAGAAGAGCAAGCCCGCTGTCAAAAAGACCAAGCT
CGCTGTCAAGAAGGCCGGTAGGTACCCCTGCCATCCCTCCGTTCCCCTTT
CCTCGTCACCGCACCACCCTATCTTACTCCCTCGCTCCTGCCTTCCCTCC
CTCCCTCACTTTCTTCCGACCTTTCAGCCCCCAAGCCCAAGGCCACCGCT
GCTAAGAAGAGCAAGCCTGCTGCCAAGAAGACCGGTAAGTACATTTCCCC
TCCCTCCCTCTTTTTCTCTTCCTTCATCCCTCTCTCTTCCTCGCCTTACC
CATCCCTCATCCTCCCTCCCTTCCCCCCTCCCTCCCTTCCTTCCAGCCCC
GAAGAAGCCCGCCGCAAAGAAGTCCAAGCCCGCGGCGAAGAAGTCCAAGC
CCGCGGCGAAGAAGGCTAAGACCACCAAGCCTAAGGTGGCTGCGAAGAAG
GGCCCCGGCCGCCCCAAGAAGGCCTAAATCATTTATTTGACTTTAGGCGA
GAGCGAGATTATAGTACGTGTGACGGAAAGCAAAAAGAGAGCTGTCGACA
GAGAGAGGGAGAGTGAAAAGTGAATACGCCATACACCGGAAACGAGGAGT
TAAAGAGAGTGACAAGAACGCATTCATCAAGGCAAGATAGTCTAGTGGGC
TGTTTGCAGATTCAGGCTAGACTACTCCATTTTTTCACACACACACCAAC
ACTACCACAACCGACACTGCCACCTATAAAGCCTAAAAAGAGAGGAATGA
AACATCAACAACAACAGAAGACCACCACGTCAAACCCACGATGAGAACGA
TGATAAGGAAAATGAGGAAACGAAGGAAAAAACAACAACCACCCTAACAT
TTACTAACTTTTGTCAA
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protein sequence of jgi.p|Nanoce1779_2|244833

>mRNA_547-protein ID=mRNA_547-protein|Name=jgi.p|Nanoce1779_2|244833|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MAAKPKTTKPKAVAKKSKPAVKKTKLAVKKAGRYPCHPSVPLSSSPHHPI
LLPRSCLPSLPHFLPTFQPPSPRPPLLRRASLLPRRPVSTFPLPPSFSLP
SSLSLPRLTHPSSSLPSPLPPFLPAPKKPAAKKSKPAAKKSKPAAKKAKT
TKPKVAAKKGPGRPKKA*
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mRNA from alignment at scaffold_3:1322231..1323662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_547 ID=mRNA_547|Name=jgi.p|Nanoce1779_2|244833|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at scaffold_3:1322231..1323662- (Nannochloropsis oceanica)
CTTCCCTCGATCCCTTCCCACTTCCCTCCCGCCACCCTAACAGAAGGCCA
CGCCCGAGGCTGCCCTCGTGAAGATGGCCGCCAAGCCCAAGACTACCAAG
GTAAGTTTACTCTGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTTTTCTCCTTTCTATCGTTCACCGGATGACCAGCTACTCCCCTTTC
TCAACCCCTCCTTCCCCCTCTCCGTCCCTTCGTCCCTCCACCCTAACAGC
CGAAGGCTGTGGCCAAGAAGAGCAAGCCCGCTGTCAAAAAGACCAAGCTC
GCTGTCAAGAAGGCCGGTAGGTACCCCTGCCATCCCTCCGTTCCCCTTTC
CTCGTCACCGCACCACCCTATCTTACTCCCTCGCTCCTGCCTTCCCTCCC
TCCCTCACTTTCTTCCGACCTTTCAGCCCCCAAGCCCAAGGCCACCGCTG
CTAAGAAGAGCAAGCCTGCTGCCAAGAAGACCGGTAAGTACATTTCCCCT
CCCTCCCTCTTTTTCTCTTCCTTCATCCCTCTCTCTTCCTCGCCTTACCC
ATCCCTCATCCTCCCTCCCTTCCCCCCTCCCTCCCTTCCTTCCAGCCCCG
AAGAAGCCCGCCGCAAAGAAGTCCAAGCCCGCGGCGAAGAAGTCCAAGCC
CGCGGCGAAGAAGGCTAAGACCACCAAGGCAAGTCTTTACCCTCTCTCCC
TTCATTTCCTTTCTCCGTCCTCTCCTCTCGTGCATAATCCTCACCCTTCC
TCCCTTCCCCCTGCTTCCTTCCCTCCCTCTATCTCACAGCCTAAGGTGGC
TGCGAAGAAGGGCCCCGGCCGCCCCAAGAAGGCCTAAATCATTTATTTGA
CTTTAGGCGAGAGCGAGATTATAGTACGTGTGACGGAAAGCAAGTTCACA
TCTTCCCCTGTGCAGGCATGTGAGTGTGTGTATGAGGGGGGGTTAATAAG
TGTGTGTGCCTGCGGAACAGAAGTGTGCGCTCTCACCCCGGTGACTAACA
CCTAAGAGTGAAGGATCAGCAAGCGTTATAAAAAGAAGGGATGAAAAAGG
CTGGAAGTTTGATGAAAAGAAACACAAGAATCAGAATGGGAAAGCGAGAA
AGAGAGCTGTCGACAGAGAGAGGGAGAGTGAAAAGTGAATACGCCATACA
CCGGAAACGAGGAGTTAAAGAGAGTGACAAGAACGCATTCATCAAGGCAA
GATAGTCTAGTGGGCTGTTTGCAGATTCAGGCTAGACTACTCCATTTTTT
CACACACACACCAACACTACCACAACCGACACTGCCACCTATAAAGCCTA
AAAAGAGAGGAATGAAACATCAACAACAACAGAAGACCACCACGTCAAAC
CCACGATGAGAACGATGATAAGGAAAATGAGGAAACGAAGGAAAAAACAA
CAACCACCCTAACATTTACTAACTTTTGTCAA
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Coding sequence (CDS) from alignment at scaffold_3:1322231..1323662-

>mRNA_547 ID=mRNA_547|Name=jgi.p|Nanoce1779_2|244833|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_3:1322231..1323662- (Nannochloropsis oceanica)
CCTAAGGTGGCTGCGAAGAAGGGCCCCGGCCGCCCCAAGAAGGCCTAACC
GAAGGCTGTGGCCAAGAAGAGCAAGCCCGCTGTCAAAAAGACCAAGCTCG
CTGTCAAGAAGGCCGGTAGGTACCCCTGCCATCCCTCCGTTCCCCTTTCC
TCGTCACCGCACCACCCTATCTTACTCCCTCGCTCCTGCCTTCCCTCCCT
CCCTCACTTTCTTCCGACCTTTCAGCCCCCAAGCCCAAGGCCACCGCTGC
TAAGAAGAGCAAGCCTGCTGCCAAGAAGACCGGTAAGTACATTTCCCCTC
CCTCCCTCTTTTTCTCTTCCTTCATCCCTCTCTCTTCCTCGCCTTACCCA
TCCCTCATCCTCCCTCCCTTCCCCCCTCCCTCCCTTCCTTCCAGCCCCGA
AGAAGCCCGCCGCAAAGAAGTCCAAGCCCGCGGCGAAGAAGTCCAAGCCC
GCGGCGAAGAAGGCTAAGACCACCAAGATGGCCGCCAAGCCCAAGACTAC
CAAGCCTAAGGTGGCTGCGAAGAAGGGCCCCGGCCGCCCCAAGAAGGCCT
AACCGAAGGCTGTGGCCAAGAAGAGCAAGCCCGCTGTCAAAAAGACCAAG
CTCGCTGTCAAGAAGGCCGGTAGGTACCCCTGCCATCCCTCCGTTCCCCT
TTCCTCGTCACCGCACCACCCTATCTTACTCCCTCGCTCCTGCCTTCCCT
CCCTCCCTCACTTTCTTCCGACCTTTCAGCCCCCAAGCCCAAGGCCACCG
CTGCTAAGAAGAGCAAGCCTGCTGCCAAGAAGACCGGTAAGTACATTTCC
CCTCCCTCCCTCTTTTTCTCTTCCTTCATCCCTCTCTCTTCCTCGCCTTA
CCCATCCCTCATCCTCCCTCCCTTCCCCCCTCCCTCCCTTCCTTCCAGCC
CCGAAGAAGCCCGCCGCAAAGAAGTCCAAGCCCGCGGCGAAGAAGTCCAA
GCCCGCGGCGAAGAAGGCTAAGACCACCAAGATGGCCGCCAAGCCCAAGA
CTACCAAGCCTAAGGTGGCTGCGAAGAAGGGCCCCGGCCGCCCCAAGAAG
GCCTAACCGAAGGCTGTGGCCAAGAAGAGCAAGCCCGCTGTCAAAAAGAC
CAAGCTCGCTGTCAAGAAGGCCGGTAGGTACCCCTGCCATCCCTCCGTTC
CCCTTTCCTCGTCACCGCACCACCCTATCTTACTCCCTCGCTCCTGCCTT
CCCTCCCTCCCTCACTTTCTTCCGACCTTTCAGCCCCCAAGCCCAAGGCC
ACCGCTGCTAAGAAGAGCAAGCCTGCTGCCAAGAAGACCGGTAAGTACAT
TTCCCCTCCCTCCCTCTTTTTCTCTTCCTTCATCCCTCTCTCTTCCTCGC
CTTACCCATCCCTCATCCTCCCTCCCTTCCCCCCTCCCTCCCTTCCTTCC
AGCCCCGAAGAAGCCCGCCGCAAAGAAGTCCAAGCCCGCGGCGAAGAAGT
CCAAGCCCGCGGCGAAGAAGGCTAAGACCACCAAGATGGCCGCCAAGCCC
AAGACTACCAAG
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Synonyms
Publications