jgi.p|Nanoce1779_2|575829, mRNA_5 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575829
Unique NamemRNA_5
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length439
Alignment locationscaffold_3:13830..14504 +

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Properties
Property NameValue
TranscriptId575915
TrackFilteredModels2
ProteinId575829
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:13830..14504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575829gene_5Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575829mRNA_5-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5CDS_5Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5 ID=mRNA_5|Name=jgi.p|Nanoce1779_2|575829|organism=Nannochloropsis oceanica|type=mRNA|length=439bp
CCGCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCCCAAG
ACCCACTTCCCGCCTCTTTTTCCAAACCTACCCCCTCCCCCTCCTCCTCC
CCTCCCACCCTTCCTCCCTCCTTTTCATGACCCTCCCCGCTACTGTTGCT
GTGGCCCTCCTCCCGTCCTCCCCTCTCGTGCCGCCGCAGTGGGAGGAAGG
GAACGAGGAGCAGCTGGCGGCGTTCTGGAAAGAGGTGGAGATGGAGGTAC
TGGTGTTGATTGAAGGCGTGGATCCACTGACCTCCAACTCCCTCCAGGCC
AAGTTTTCCTACAAGTGGGAAGATGTCGGTTACGGCTCTGCCTTCGCCCC
CTGCTTGTTGGTGCGGCACCACGATGGTGGGTGTGTGCTTGACGTGGCCA
AGTTCCACCAGACCCAGAGGGTGGCGTGAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|575829

>mRNA_5-protein ID=mRNA_5-protein|Name=jgi.p|Nanoce1779_2|575829|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MTLPATVAVALLPSSPLVPPQWEEGNEEQLAAFWKEVEMEVLVLIEGVDP
LTSNSLQAKFSYKWEDVGYGSAFAPCLLVRHHDGGCVLDVAKFHQTQRVA
*
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mRNA from alignment at scaffold_3:13830..14504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5 ID=mRNA_5|Name=jgi.p|Nanoce1779_2|575829|organism=Nannochloropsis oceanica|type=mRNA|length=675bp|location=Sequence derived from alignment at scaffold_3:13830..14504+ (Nannochloropsis oceanica)
CCGCCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCCCAAG
ACCCACTTCCCGCCTCTTTTTCCAAACCTACCCCCTCCCCCTCCTCCTCC
CCTCCCACCCTTCCTCCCTCCTTTTCATGACCCTCCCCGCTACTGTTGCT
GTGGCCCTCCTCCCGTCCTCCCCTCTCGTGCCGCCGCAGTGGGAGGAAGG
GAACGAGGAGCAGCTGGCGGCGTTCTGGAAAGAGGTGGAGATGGAGGTAC
TGGTGTTGATTGAAGGTGAGGGATGGAGGGAGAAAGGGAAGGAAGGAGGG
AAGGAAGGGAGTGTACAGAAGCGGTCGACGTGGCTGGTCTGCGTTGCCTC
CTCCCTGATTCCCAGGGCACTGCACCCGCGCACTTCCAAGCCAAGCACCT
CCACACTCACAGACGGGAAAGCCAACACTCTCTGGAGCCTTGCCGTGGCC
ACTCTTCTTCACCCACCCTTCTTCCCTCCCTCCCTCCCTCCCTCCCTCTA
GGCGTGGATCCACTGACCTCCAACTCCCTCCAGGCCAAGTTTTCCTACAA
GTGGGAAGATGTCGGTTACGGCTCTGCCTTCGCCCCCTGCTTGTTGGTGC
GGCACCACGATGGTGGGTGTGTGCTTGACGTGGCCAAGTTCCACCAGACC
CAGAGGGTGGCGTGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_3:13830..14504+

>mRNA_5 ID=mRNA_5|Name=jgi.p|Nanoce1779_2|575829|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_3:13830..14504+ (Nannochloropsis oceanica)
ATGACCCTCCCCGCTACTGTTGCTGTGGCCCTCCTCCCGTCCTCCCCTCT
CGTGCCGCCGCAGTGGGAGGAAGGGAACGAGGAGCAGCTGGCGGCGTTCT
GGAAAGAGGTGGAGATGGAGGTACTGGTGTTGATTGAAGGCGTGGATCCA
CTGACCTCCAACTCCCTCCAGGCCAAGTTTTCCTACAAGTGGGAAGATGT
CGGTTACGGCTCTGCCTTCGCCCCCTGCTTGTTGGTGCGGCACCACGATG
GTGGGTGTGTGCTTGACGTGGCCAAGTTCCACCAGACCCAGAGGGTGGCG
TGAATGACCCTCCCCGCTACTGTTGCTGTGGCCCTCCTCCCGTCCTCCCC
TCTCGTGCCGCCGCAGTGGGAGGAAGGGAACGAGGAGCAGCTGGCGGCGT
TCTGGAAAGAGGTGGAGATGGAGGTACTGGTGTTGATTGAAGGCGTGGAT
CCACTGACCTCCAACTCCCTCCAGGCCAAGTTTTCCTACAAGTGGGAAGA
TGTCGGTTACGGCTCTGCCTTCGCCCCCTGCTTGTTGGTGCGGCACCACG
ATGGTGGGTGTGTGCTTGACGTGGCCAAGTTCCACCAGACCCAGAGGGTG
GCGTGA
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Synonyms
Publications