jgi.p|Nanoce1779_2|605538, mRNA_9801 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605538
Unique NamemRNA_9801
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length908
Alignment locationscaffold_32:122590..123497 +

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Properties
Property NameValue
TranscriptId605624
TrackFilteredModels2
ProteinId605538
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_32supercontigscaffold_32:122590..123497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605538gene_9801Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605538mRNA_9801-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9801CDS_9801Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9801 ID=mRNA_9801|Name=jgi.p|Nanoce1779_2|605538|organism=Nannochloropsis oceanica|type=mRNA|length=908bp
AACAACAGGCATACTTTGAGGCAGCCGTGGAAATGACAGTCAAGCCGGCA
GTGCAGCCCGTGGTGGAAGGTGGCCTGAATTCGGTATCCTCCAGCGCAGC
TTTCTCTTCTCCTCCTTTGCCTATTGCCTCTACTTCCTCTTCCCACTCTA
CTTTTCAGGCAGACGAGCACAACTCTTCGTTCACCTCCCTTTTGTCTGTC
CTCATAATGGCTCTTGGTGCATTATTCCTATTTCTATCCGCGCGCTGCCG
TACCATGGGCAAGAAAAAGCGCCTCCGTTCAGCCGCATCAGCTTTACATC
ACGCATTGGCAGAGAAAAGAAAGCGTTTGCATGCCGTCTGGCAATTGGAC
AGATTGGAGGGAAAAGGTGCACCGTGTGATCACAAAAACAACACAAGTAC
TAAAGACCGGAAAGTCCAGCCTCTACCCGACCACCACCTTCTTGCCATTC
CCTCATCGTCGTCGTCCTCCTCTTATCATTTCTCCGCACATCTTCTCGCC
CCACCCACCGCCGTGCTTCTCCACACACCTTATCTTCCCCCATTGTCCCC
TTCGTGCTTTGCCGAAGTGCAGCCCATTGACACCATCGACGGTATATGGG
CATGGAGAACGTTCGAAAAAGGCAATCCCAATTTTACGTACCTCCCCCCT
TCCTTATACACTTTCCCTCTCTCAAAGACTCCTTCCTCCTACTCCTCCTC
CCACCCCTCCTCCCTCTCCTCCTTTTCCTCTTCTTTTCCATCCTCCTGTT
TTTCCTCCTCCCATCCCTTCTCCTCGTCTTCCTCGTCGTCCTCCTCGTCC
TCGTCCTCCTCGTTGTCCTCCTTCTCCTCCTCGTCCTCGTTCTCCTCCTC
GTCCTCCTTCTCCTTAAACCCCTCGTTCTCCTCGTCATCCTCATCCTCCT
CCTCCTCC
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protein sequence of jgi.p|Nanoce1779_2|605538

>mRNA_9801-protein ID=mRNA_9801-protein|Name=jgi.p|Nanoce1779_2|605538|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MPSGNWTDWREKVHRVITKTTQVLKTGKSSLYPTTTFLPFPHRRRPPLII
SPHIFSPHPPPCFSTHLIFPHCPLRALPKCSPLTPSTVYGHGERSKKAIP
ILRTSPLPYTLSLSQRLLPPTPPPTPPPSPPFPLLFHPPVFPPPIPSPRL
PRRPPRPRPPRCPPSPPRPRSPPRPPSP*
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mRNA from alignment at scaffold_32:122590..123497+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9801 ID=mRNA_9801|Name=jgi.p|Nanoce1779_2|605538|organism=Nannochloropsis oceanica|type=mRNA|length=908bp|location=Sequence derived from alignment at scaffold_32:122590..123497+ (Nannochloropsis oceanica)
AACAACAGGCATACTTTGAGGCAGCCGTGGAAATGACAGTCAAGCCGGCA
GTGCAGCCCGTGGTGGAAGGTGGCCTGAATTCGGTATCCTCCAGCGCAGC
TTTCTCTTCTCCTCCTTTGCCTATTGCCTCTACTTCCTCTTCCCACTCTA
CTTTTCAGGCAGACGAGCACAACTCTTCGTTCACCTCCCTTTTGTCTGTC
CTCATAATGGCTCTTGGTGCATTATTCCTATTTCTATCCGCGCGCTGCCG
TACCATGGGCAAGAAAAAGCGCCTCCGTTCAGCCGCATCAGCTTTACATC
ACGCATTGGCAGAGAAAAGAAAGCGTTTGCATGCCGTCTGGCAATTGGAC
AGATTGGAGGGAAAAGGTGCACCGTGTGATCACAAAAACAACACAAGTAC
TAAAGACCGGAAAGTCCAGCCTCTACCCGACCACCACCTTCTTGCCATTC
CCTCATCGTCGTCGTCCTCCTCTTATCATTTCTCCGCACATCTTCTCGCC
CCACCCACCGCCGTGCTTCTCCACACACCTTATCTTCCCCCATTGTCCCC
TTCGTGCTTTGCCGAAGTGCAGCCCATTGACACCATCGACGGTATATGGG
CATGGAGAACGTTCGAAAAAGGCAATCCCAATTTTACGTACCTCCCCCCT
TCCTTATACACTTTCCCTCTCTCAAAGACTCCTTCCTCCTACTCCTCCTC
CCACCCCTCCTCCCTCTCCTCCTTTTCCTCTTCTTTTCCATCCTCCTGTT
TTTCCTCCTCCCATCCCTTCTCCTCGTCTTCCTCGTCGTCCTCCTCGTCC
TCGTCCTCCTCGTTGTCCTCCTTCTCCTCCTCGTCCTCGTTCTCCTCCTC
GTCCTCCTTCTCCTTAAACCCCTCGTTCTCCTCGTCATCCTCATCCTCCT
CCTCCTCC
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Coding sequence (CDS) from alignment at scaffold_32:122590..123497+

>mRNA_9801 ID=mRNA_9801|Name=jgi.p|Nanoce1779_2|605538|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_32:122590..123497+ (Nannochloropsis oceanica)
ATGCCGTCTGGCAATTGGACAGATTGGAGGGAAAAGGTGCACCGTGTGAT
CACAAAAACAACACAAGTACTAAAGACCGGAAAGTCCAGCCTCTACCCGA
CCACCACCTTCTTGCCATTCCCTCATCGTCGTCGTCCTCCTCTTATCATT
TCTCCGCACATCTTCTCGCCCCACCCACCGCCGTGCTTCTCCACACACCT
TATCTTCCCCCATTGTCCCCTTCGTGCTTTGCCGAAGTGCAGCCCATTGA
CACCATCGACGGTATATGGGCATGGAGAACGTTCGAAAAAGGCAATCCCA
ATTTTACGTACCTCCCCCCTTCCTTATACACTTTCCCTCTCTCAAAGACT
CCTTCCTCCTACTCCTCCTCCCACCCCTCCTCCCTCTCCTCCTTTTCCTC
TTCTTTTCCATCCTCCTGTTTTTCCTCCTCCCATCCCTTCTCCTCGTCTT
CCTCGTCGTCCTCCTCGTCCTCGTCCTCCTCGTTGTCCTCCTTCTCCTCC
TCGTCCTCGTTCTCCTCCTCGTCCTCCTTCTCCTTAA
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Synonyms
Publications