jgi.p|Nanoce1779_2|538269, mRNA_2129 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|538269
Unique NamemRNA_2129
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1684
Alignment locationscaffold_4:871481..873164 -

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Properties
Property NameValue
TranscriptId538355
TrackFilteredModels2
ProteinId538269
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:871481..873164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538269gene_2129Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538269mRNA_2129-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2129CDS_2129Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2129 ID=mRNA_2129|Name=jgi.p|Nanoce1779_2|538269|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp
AGACGCTGCCAGAAGAGGGTCCAAGCTTTTGGGATTCCTCTCTTATCCTT
TGCCTGTTGTGCCTTTCGAGTCTCTCGCTAGCTGGATCGGAGCTCCGCCG
CCACCTCTACCGCCTAACCTCACCACCTACGCATCCCCGTCATCAGGCAA
ATGAAGGCCATGGCCCCAATACTTCTTGCCTGTTACATGTCTGGAGCTGG
CGCAGTTGCTGCCGCTGGTGGCATGACGGCACGATACACCCGTGCATTTG
TCCGGCCGCTGGGGTCCAACCCCGCTGCTGCCACACGCCGTGCTGCTTCA
CATCAGCAAACCCGGCACATGATGATGGCGTCTGCCTCCTCCGTGGCTGA
AGGCAAGCAGCTGGACGCTCGTGTACATACGGGCCACCACAAGAACAACG
TGCCGGTGGCACTGTCGGAGAAGATTGGCCGGGAGCTGCATCGCAACCCC
AGCCATCCGCTGGGAATCATCAAGGACCGAATCGAAGGCTACTTCCGCGA
GCGGGCGGCCACCACAGGCGTGGCCGTGGAGATTGTAGACAACTTTTTCC
CCGTCGTCTCGATTGTGAATAATTTCGATGATTTGTTGATTCCGCCTGAT
CATGTTTCGAGGTCGCCTATTGATACTTACTACGTGGATGACCAACAGGT
GTTGCGGACGCATACAAGCGCGCATCAGAGCACTATGTTGGGAAAGGGAT
ATGAAGCGTTCTTGGTGACTGGTGATGTGTATCGACGGGATGAGATCGAT
CGGACGCATTATCCCGTTTTTCATCAGATGGAGGGAGTACGTGTCTTCCC
GGGATTGTTGGAAAAAAGTGGGAGTAGGGAGGAGGGGGTCAAAATGGTGG
AGAAGGATTTGAAGGACGCCCTTGAAGGGATGGTGATGGCTTTGTTCGGA
GATGTGGAAAGGCGGTGGGTGGATACTTACTTTCCGTTCACGGACCCGTC
ATTCGAGTTGGAGATATTTTACAATGACGAGTGGTTGGAGGTTTTAGGGT
GCGGGGTGATGCAACAAGAAATTGTGCGGAAGGCGGGGAAGGGGGAAACG
CTTGGATGGGCCTTTGGCCTGGGTTTAGAGAGATTGGCGATGGTTTTGTT
CCAGATTCCGGATATTCGTTTGTTTTGGTCCACGGATAAGAGGTTTACGG
ATCAGTTCTCCGCTGGGAAGATTAGCAAGTTCTCGCCGTTTTCGAAGTAC
CCGCCTTGTTATAAAGACGTGTCGTTTTGGGTGGACCCGGTGGCGGGATT
CAATAATAATGACTTTTTCGAGATTGTTAGGGGGGTGGGGGGGGATTTGG
TGGAGAGTGTAGTGTTGGTGGATGAGTTTGTGCATCCTAAGACAGGGAGG
GGGAGCAAGTGCTTCCGGGTCAATTATCGGAGTATGGAGCGGAGTTTGAC
GAATGATGAGATTGATGTGTTGCAGGAGGAAGTTAGGAAGCAAATGGCGG
AGGCGTTGAAAGTGGAGTTGCGCTAGAGGAGAGTGGGGGATGTGGGGGTG
AGAAAATAAATTCGGGTGTGAGGTAGCATCAGCTCGAGGGCTTGTCTGGC
TTAGTACGGGGTCTTATCATTTAAGATCAACCAAAGTATGTGTGTACCTG
CGCGAGGGAGGATATCGTGATTGCAGATACACGATAGTTAAGGGGAAATA
AAGTGAAGAAGCACAAGCACATGGCACACACTGT
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protein sequence of jgi.p|Nanoce1779_2|538269

>mRNA_2129-protein ID=mRNA_2129-protein|Name=jgi.p|Nanoce1779_2|538269|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MKAMAPILLACYMSGAGAVAAAGGMTARYTRAFVRPLGSNPAAATRRAAS
HQQTRHMMMASASSVAEGKQLDARVHTGHHKNNVPVALSEKIGRELHRNP
SHPLGIIKDRIEGYFRERAATTGVAVEIVDNFFPVVSIVNNFDDLLIPPD
HVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEID
RTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFG
DVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGET
LGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKY
PPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGR
GSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR*
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mRNA from alignment at scaffold_4:871481..873164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2129 ID=mRNA_2129|Name=jgi.p|Nanoce1779_2|538269|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp|location=Sequence derived from alignment at scaffold_4:871481..873164- (Nannochloropsis oceanica)
AGACGCTGCCAGAAGAGGGTCCAAGCTTTTGGGATTCCTCTCTTATCCTT
TGCCTGTTGTGCCTTTCGAGTCTCTCGCTAGCTGGATCGGAGCTCCGCCG
CCACCTCTACCGCCTAACCTCACCACCTACGCATCCCCGTCATCAGGCAA
ATGAAGGCCATGGCCCCAATACTTCTTGCCTGTTACATGTCTGGAGCTGG
CGCAGTTGCTGCCGCTGGTGGCATGACGGCACGATACACCCGTGCATTTG
TCCGGCCGCTGGGGTCCAACCCCGCTGCTGCCACACGCCGTGCTGCTTCA
CATCAGCAAACCCGGCACATGATGATGGCGTCTGCCTCCTCCGTGGCTGA
AGGCAAGCAGCTGGACGCTCGTGTACATACGGGCCACCACAAGAACAACG
TGCCGGTGGCACTGTCGGAGAAGATTGGCCGGGAGCTGCATCGCAACCCC
AGCCATCCGCTGGGAATCATCAAGGACCGAATCGAAGGCTACTTCCGCGA
GCGGGCGGCCACCACAGGCGTGGCCGTGGAGATTGTAGACAACTTTTTCC
CCGTCGTCTCGATTGTGAATAATTTCGATGATTTGTTGATTCCGCCTGAT
CATGTTTCGAGGTCGCCTATTGATACTTACTACGTGGATGACCAACAGGT
GTTGCGGACGCATACAAGCGCGCATCAGAGCACTATGTTGGGAAAGGGAT
ATGAAGCGTTCTTGGTGACTGGTGATGTGTATCGACGGGATGAGATCGAT
CGGACGCATTATCCCGTTTTTCATCAGATGGAGGGAGTACGTGTCTTCCC
GGGATTGTTGGAAAAAAGTGGGAGTAGGGAGGAGGGGGTCAAAATGGTGG
AGAAGGATTTGAAGGACGCCCTTGAAGGGATGGTGATGGCTTTGTTCGGA
GATGTGGAAAGGCGGTGGGTGGATACTTACTTTCCGTTCACGGACCCGTC
ATTCGAGTTGGAGATATTTTACAATGACGAGTGGTTGGAGGTTTTAGGGT
GCGGGGTGATGCAACAAGAAATTGTGCGGAAGGCGGGGAAGGGGGAAACG
CTTGGATGGGCCTTTGGCCTGGGTTTAGAGAGATTGGCGATGGTTTTGTT
CCAGATTCCGGATATTCGTTTGTTTTGGTCCACGGATAAGAGGTTTACGG
ATCAGTTCTCCGCTGGGAAGATTAGCAAGTTCTCGCCGTTTTCGAAGTAC
CCGCCTTGTTATAAAGACGTGTCGTTTTGGGTGGACCCGGTGGCGGGATT
CAATAATAATGACTTTTTCGAGATTGTTAGGGGGGTGGGGGGGGATTTGG
TGGAGAGTGTAGTGTTGGTGGATGAGTTTGTGCATCCTAAGACAGGGAGG
GGGAGCAAGTGCTTCCGGGTCAATTATCGGAGTATGGAGCGGAGTTTGAC
GAATGATGAGATTGATGTGTTGCAGGAGGAAGTTAGGAAGCAAATGGCGG
AGGCGTTGAAAGTGGAGTTGCGCTAGAGGAGAGTGGGGGATGTGGGGGTG
AGAAAATAAATTCGGGTGTGAGGTAGCATCAGCTCGAGGGCTTGTCTGGC
TTAGTACGGGGTCTTATCATTTAAGATCAACCAAAGTATGTGTGTACCTG
CGCGAGGGAGGATATCGTGATTGCAGATACACGATAGTTAAGGGGAAATA
AAGTGAAGAAGCACAAGCACATGGCACACACTGT
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Coding sequence (CDS) from alignment at scaffold_4:871481..873164-

>mRNA_2129 ID=mRNA_2129|Name=jgi.p|Nanoce1779_2|538269|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_4:871481..873164- (Nannochloropsis oceanica)
ATGAAGGCCATGGCCCCAATACTTCTTGCCTGTTACATGTCTGGAGCTGG
CGCAGTTGCTGCCGCTGGTGGCATGACGGCACGATACACCCGTGCATTTG
TCCGGCCGCTGGGGTCCAACCCCGCTGCTGCCACACGCCGTGCTGCTTCA
CATCAGCAAACCCGGCACATGATGATGGCGTCTGCCTCCTCCGTGGCTGA
AGGCAAGCAGCTGGACGCTCGTGTACATACGGGCCACCACAAGAACAACG
TGCCGGTGGCACTGTCGGAGAAGATTGGCCGGGAGCTGCATCGCAACCCC
AGCCATCCGCTGGGAATCATCAAGGACCGAATCGAAGGCTACTTCCGCGA
GCGGGCGGCCACCACAGGCGTGGCCGTGGAGATTGTAGACAACTTTTTCC
CCGTCGTCTCGATTGTGAATAATTTCGATGATTTGTTGATTCCGCCTGAT
CATGTTTCGAGGTCGCCTATTGATACTTACTACGTGGATGACCAACAGGT
GTTGCGGACGCATACAAGCGCGCATCAGAGCACTATGTTGGGAAAGGGAT
ATGAAGCGTTCTTGGTGACTGGTGATGTGTATCGACGGGATGAGATCGAT
CGGACGCATTATCCCGTTTTTCATCAGATGGAGGGAGTACGTGTCTTCCC
GGGATTGTTGGAAAAAAGTGGGAGTAGGGAGGAGGGGGTCAAAATGGTGG
AGAAGGATTTGAAGGACGCCCTTGAAGGGATGGTGATGGCTTTGTTCGGA
GATGTGGAAAGGCGGTGGGTGGATACTTACTTTCCGTTCACGGACCCGTC
ATTCGAGTTGGAGATATTTTACAATGACGAGTGGTTGGAGGTTTTAGGGT
GCGGGGTGATGCAACAAGAAATTGTGCGGAAGGCGGGGAAGGGGGAAACG
CTTGGATGGGCCTTTGGCCTGGGTTTAGAGAGATTGGCGATGGTTTTGTT
CCAGATTCCGGATATTCGTTTGTTTTGGTCCACGGATAAGAGGTTTACGG
ATCAGTTCTCCGCTGGGAAGATTAGCAAGTTCTCGCCGTTTTCGAAGTAC
CCGCCTTGTTATAAAGACGTGTCGTTTTGGGTGGACCCGGTGGCGGGATT
CAATAATAATGACTTTTTCGAGATTGTTAGGGGGGTGGGGGGGGATTTGG
TGGAGAGTGTAGTGTTGGTGGATGAGTTTGTGCATCCTAAGACAGGGAGG
GGGAGCAAGTGCTTCCGGGTCAATTATCGGAGTATGGAGCGGAGTTTGAC
GAATGATGAGATTGATGTGTTGCAGGAGGAAGTTAGGAAGCAAATGGCGG
AGGCGTTGAAAGTGGAGTTGCGCTAG
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Synonyms
Publications