jgi.p|Nanoce1779_2|551955, mRNA_2216 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|551955
Unique Name	mRNA_2216
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1397
Alignment location	scaffold_4:1074068..1075563 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	552041
Track	FilteredModels2
ProteinId	551955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1074068..1075563 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551955	gene_2216	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|551955	mRNA_2216-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2216	CDS_2216	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1074068..1075563+
coding sequence from alignment at scaffold_4:1074068..1075563+

mRNA sequence

>mRNA_2216 ID=mRNA_2216|Name=jgi.p|Nanoce1779_2|551955|organism=Nannochloropsis oceanica|type=mRNA|length=1397bp
ATTCCAACGAACTCGTAGAGATCTCCATACCCGCGGCCGCTCCTATTGAT
AAGATGCTAAAAGCTATCAATTTCCGCAGGGATGACCTGCCACTGTGGGA
ATCCGTGCAAGGCGAAGTCCGGTTCAATGGGCTCCCGTACCACATCAAAG
GCGTAAATTGGTTTGGTTTTGAGACGGACACACGCGTATTTCATGGGCTG
GATGTACACACTTTGGGATTTTACTTGGATTTTTTGAGAGCAGAAGATTT
TAATCTGCTGCGTTTGCCCATTTCACTGGCAGCGGCTCTTAATCTGGATT
CGTACCCGAGCTATCACTATTTTCAAGATCCGGTCTTGCGGGGAAAGACG
GTGCGCCAGCTGCTAGAGATCGTGATTCATGAGGCGGGTGCCCGTGGAAT
TATGGTGATTTTGGACATGCATCGGGCGCGGGAGAACGAAAAGTTTGAGC
TTTGGTACACGAAGGAGTACTCCTATGACATGTTGCTGGACGGGTGGAAC
TACTTGTTAAGCGCATTTAAACATCGGTGGAACATCATGGGCGTGGACCT
GCTCAACGAGCCCCATGGTGCGGCAAGGTGGGAATCAGGAGACCCAGGCA
TAGATTGGAACCGCGCAGCAGAGAATATGACTATGACTCTGATGCAGGCG
CATCCGGAGTACACCGGGCTCTTCTTCGTTGAAGGAGTTTCGAACAACTA
CCCATACATTTGCTTCTGGGGTGCCAATCTAGAAGGCGTGGCTCGGAGGC
CTTTGGATGTGCGTGGGAACGGTAAATTTCCCAATGGGAACAGGCGCGTC
GTATACTCTCCGCATACATACGGGCCGTCGGTGGACCAGCAGCCGTATTT
TGACGCTCCCGACTATCCGCGCAATCTGCCGAAAATTTGGGACGCTTTGT
TTGGTTTTGTGGAGCAGGCTACGGGGAATGCTGTGGTCATAGGCGAGTGG
GGTGGCTTTTACCACAACCAAACAAAACTCTTTATCGACGAGTTTGCCCT
GTACCTGCTTGAGCGGTGCATGTCGGACAACATTTTCTGGGTGCTGAATC
CGAATAGCGCTGACACGGGAGGCCTACTCGACAACGACTGGACTACGCCT
AGGCGCCACCGTCTCAAGGTTTTACAGATCGTGCAGCCTTCCCCGTCCCG
GCTCTTTTTCGATGGCGAAAAGTTTGTTTACAAGCCAGGGGCTTATGCAA
ACCGTGAGTGCGACCCACGCTGGAGGCTCTGGCTGGAGCAGGAGCGGCAA
CGGTTGCATGAGGGTGGGTATGACGTGGAGTGGGAGGAGGAAGGATTCAC
ACCACTGGTGCAAAGCATGAGGCACTCACAGGAGCAGAACATGAGAGAGC
AGGAGGCGGATATTGTGAGGGAATGGGCTGCACAAGAGGACATCTGA

protein sequence of jgi.p|Nanoce1779_2|551955

>mRNA_2216-protein ID=mRNA_2216-protein|Name=jgi.p|Nanoce1779_2|551955|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MLKAINFRRDDLPLWESVQGEVRFNGLPYHIKGVNWFGFETDTRVFHGLD
VHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTV
RQLLEIVIHEAGARGIMVILDMHRARENEKFELWYTKEYSYDMLLDGWNY
LLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAH
PEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVV
YSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFVEQATGNAVVIGEWG
GFYHNQTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPR
RHRLKVLQIVQPSPSRLFFDGEKFVYKPGAYANRECDPRWRLWLEQERQR
LHEGGYDVEWEEEGFTPLVQSMRHSQEQNMREQEADIVREWAAQEDI*

mRNA from alignment at scaffold_4:1074068..1075563+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2216 ID=mRNA_2216|Name=jgi.p|Nanoce1779_2|551955|organism=Nannochloropsis oceanica|type=mRNA|length=1496bp|location=Sequence derived from alignment at scaffold_4:1074068..1075563+ (Nannochloropsis oceanica)
ATTCCAACGAACTCGTAGAGATCTCCATACCCGCGGCCGCTCCTATTGAT
AAGATGCTAAAAGCTATCAATTTCCGCAGGGATGACCTGCCACTGTGGGA
ATCCGTGCAAGGCGAAGTCCGGTTCAATGGGCTCCCGTACCACATCAAAG
GCGTAAATTGGTTTGGTTTTGAGACGGACACACGCGTATTTCATGGGCTG
GATGTACACACTTTGGGATTTTACTTGGATTTTTTGAGAGCAGAAGATTT
TAATCTGCTGCGTTTGCCCATTTCACTGGCAGCGGCTCTTAATCTGGATT
CGTACCCGAGCTATCACTATTTTCAAGATCCGGTCTTGCGGGGAAAGACG
GTGCGCCAGCTGCTAGAGATCGTGATTCATGAGGCGGGTGCCCGTGGAAT
TATGGTGATTTTGGACATGCATCGGGCGCGGGAGAACGAAAAGTTTGAGC
TTTGGTACACGAAGGAGTACTCCTATGACATGTTGCTGGACGGGTGGAAC
TACTTGTTAAGCGCATTTAAACATCGGTGGAACATCATGGGCGTGGACCT
GCTCAACGAGCCCCATGGTGCGGCAAGGTGGGAATCAGGAGACCCAGGCA
TAGATTGGAACCGCGCAGCAGAGAATATGACTATGACTCTGATGCAGGCG
CATCCGGAGTACACCGGGCTCTTCTTCGTTGAAGGAGTTTCGAACAACTA
CCCATACATTTGCTTCTGGGGTGCCAATCTAGAAGGCGTGGCTCGGAGGC
CTTTGGATGTGCGTGGGAACGGTAAATTTCCCAATGGGAACAGGCGCGTC
GTATACTCTCCGCATACATACGGGCCGTCGGTGGACCAGCAGCCGTATTT
TGACGCTCCCGACTATCCGCGCAATCTGCCGAAAATTTGGGACGCTTTGT
TTGGTTTTGTGGAGCAGGCTACGGGGAATGCTGTGGTCATAGGCGAGTGG
GGTGGCTTTTACCACAACCAAACAAAACTCTTTATCGACGAGTTTGCCCT
GTACCTGCTTGAGCGGTGCATGTCGGACAACATTTTCTGGGTGCTGAATC
CGAATGTAAGTTTCTGGGTGAGGGAGGTTTGGTAGGAATTATGAACACTA
AGTATTTTTGTGTGCATTTGTCACGCGTATGACAACTTTTGCATGCATGT
ACAGAGCGCTGACACGGGAGGCCTACTCGACAACGACTGGACTACGCCTA
GGCGCCACCGTCTCAAGGTTTTACAGATCGTGCAGCCTTCCCCGTCCCGG
CTCTTTTTCGATGGCGAAAAGTTTGTTTACAAGCCAGGGGCTTATGCAAA
CCGTGAGTGCGACCCACGCTGGAGGCTCTGGCTGGAGCAGGAGCGGCAAC
GGTTGCATGAGGGTGGGTATGACGTGGAGTGGGAGGAGGAAGGATTCACA
CCACTGGTGCAAAGCATGAGGCACTCACAGGAGCAGAACATGAGAGAGCA
GGAGGCGGATATTGTGAGGGAATGGGCTGCACAAGAGGACATCTGA

Coding sequence (CDS) from alignment at scaffold_4:1074068..1075563+

>mRNA_2216 ID=mRNA_2216|Name=jgi.p|Nanoce1779_2|551955|organism=Nannochloropsis oceanica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_4:1074068..1075563+ (Nannochloropsis oceanica)
ATGCTAAAAGCTATCAATTTCCGCAGGGATGACCTGCCACTGTGGGAATC
CGTGCAAGGCGAAGTCCGGTTCAATGGGCTCCCGTACCACATCAAAGGCG
TAAATTGGTTTGGTTTTGAGACGGACACACGCGTATTTCATGGGCTGGAT
GTACACACTTTGGGATTTTACTTGGATTTTTTGAGAGCAGAAGATTTTAA
TCTGCTGCGTTTGCCCATTTCACTGGCAGCGGCTCTTAATCTGGATTCGT
ACCCGAGCTATCACTATTTTCAAGATCCGGTCTTGCGGGGAAAGACGGTG
CGCCAGCTGCTAGAGATCGTGATTCATGAGGCGGGTGCCCGTGGAATTAT
GGTGATTTTGGACATGCATCGGGCGCGGGAGAACGAAAAGTTTGAGCTTT
GGTACACGAAGGAGTACTCCTATGACATGTTGCTGGACGGGTGGAACTAC
TTGTTAAGCGCATTTAAACATCGGTGGAACATCATGGGCGTGGACCTGCT
CAACGAGCCCCATGGTGCGGCAAGGTGGGAATCAGGAGACCCAGGCATAG
ATTGGAACCGCGCAGCAGAGAATATGACTATGACTCTGATGCAGGCGCAT
CCGGAGTACACCGGGCTCTTCTTCGTTGAAGGAGTTTCGAACAACTACCC
ATACATTTGCTTCTGGGGTGCCAATCTAGAAGGCGTGGCTCGGAGGCCTT
TGGATGTGCGTGGGAACGGTAAATTTCCCAATGGGAACAGGCGCGTCGTA
TACTCTCCGCATACATACGGGCCGTCGGTGGACCAGCAGCCGTATTTTGA
CGCTCCCGACTATCCGCGCAATCTGCCGAAAATTTGGGACGCTTTGTTTG
GTTTTGTGGAGCAGGCTACGGGGAATGCTGTGGTCATAGGCGAGTGGGGT
GGCTTTTACCACAACCAAACAAAACTCTTTATCGACGAGTTTGCCCTGTA
CCTGCTTGAGCGGTGCATGTCGGACAACATTTTCTGGGTGCTGAATCCGA
ATAGCGCTGACACGGGAGGCCTACTCGACAACGACTGGACTACGCCTAGG
CGCCACCGTCTCAAGGTTTTACAGATCGTGCAGCCTTCCCCGTCCCGGCT
CTTTTTCGATGGCGAAAAGTTTGTTTACAAGCCAGGGGCTTATGCAAACC
GTGAGTGCGACCCACGCTGGAGGCTCTGGCTGGAGCAGGAGCGGCAACGG
TTGCATGAGGGTGGGTATGACGTGGAGTGGGAGGAGGAAGGATTCACACC
ACTGGTGCAAAGCATGAGGCACTCACAGGAGCAGAACATGAGAGAGCAGG
AGGCGGATATTGTGAGGGAATGGGCTGCACAAGAGGACATCTGAATGCTA
AAAGCTATCAATTTCCGCAGGGATGACCTGCCACTGTGGGAATCCGTGCA
AGGCGAAGTCCGGTTCAATGGGCTCCCGTACCACATCAAAGGCGTAAATT
GGTTTGGTTTTGAGACGGACACACGCGTATTTCATGGGCTGGATGTACAC
ACTTTGGGATTTTACTTGGATTTTTTGAGAGCAGAAGATTTTAATCTGCT
GCGTTTGCCCATTTCACTGGCAGCGGCTCTTAATCTGGATTCGTACCCGA
GCTATCACTATTTTCAAGATCCGGTCTTGCGGGGAAAGACGGTGCGCCAG
CTGCTAGAGATCGTGATTCATGAGGCGGGTGCCCGTGGAATTATGGTGAT
TTTGGACATGCATCGGGCGCGGGAGAACGAAAAGTTTGAGCTTTGGTACA
CGAAGGAGTACTCCTATGACATGTTGCTGGACGGGTGGAACTACTTGTTA
AGCGCATTTAAACATCGGTGGAACATCATGGGCGTGGACCTGCTCAACGA
GCCCCATGGTGCGGCAAGGTGGGAATCAGGAGACCCAGGCATAGATTGGA
ACCGCGCAGCAGAGAATATGACTATGACTCTGATGCAGGCGCATCCGGAG
TACACCGGGCTCTTCTTCGTTGAAGGAGTTTCGAACAACTACCCATACAT
TTGCTTCTGGGGTGCCAATCTAGAAGGCGTGGCTCGGAGGCCTTTGGATG
TGCGTGGGAACGGTAAATTTCCCAATGGGAACAGGCGCGTCGTATACTCT
CCGCATACATACGGGCCGTCGGTGGACCAGCAGCCGTATTTTGACGCTCC
CGACTATCCGCGCAATCTGCCGAAAATTTGGGACGCTTTGTTTGGTTTTG
TGGAGCAGGCTACGGGGAATGCTGTGGTCATAGGCGAGTGGGGTGGCTTT
TACCACAACCAAACAAAACTCTTTATCGACGAGTTTGCCCTGTACCTGCT
TGAGCGGTGCATGTCGGACAACATTTTCTGGGTGCTGAATCCGAATAGCG
CTGACACGGGAGGCCTACTCGACAACGACTGGACTACGCCTAGGCGCCAC
CGTCTCAAGGTTTTACAGATCGTGCAGCCTTCCCCGTCCCGGCTCTTTTT
CGATGGCGAAAAGTTTGTTTACAAGCCAGGGGCTTATGCAAACCGTGAGT
GCGACCCACGCTGGAGGCTCTGGCTGGAGCAGGAGCGGCAACGGTTGCAT
GAGGGTGGGTATGACGTGGAGTGGGAGGAGGAAGGATTCACACCACTGGT
GCAAAGCATGAGGCACTCACAGGAGCAGAACATGAGAGAGCAGGAGGCGG
ATATTGTGAGGGAATGGGCTGCACAAGAGGACATCTGA

Synonyms

Publications