jgi.p|Nanoce1779_2|578061, mRNA_1820 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578061
Unique Name	mRNA_1820
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	848
Alignment location	scaffold_4:93773..95595 +

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Properties


Property Name	Value
TranscriptId	578147
Track	FilteredModels2
ProteinId	578061

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:93773..95595 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578061	gene_1820	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578061	mRNA_1820-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1820	CDS_1820	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:93773..95595+
coding sequence from alignment at scaffold_4:93773..95595+

mRNA sequence

>mRNA_1820 ID=mRNA_1820|Name=jgi.p|Nanoce1779_2|578061|organism=Nannochloropsis oceanica|type=mRNA|length=848bp
GAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGA
GGAGGAAGAATGGCCAGGAGAAGGCCTGTGTGTTTGGTTTTATGCGCATC
GATATCTCCCTTCAGGGCACGATCACTTCACCCGTGTCGTGATACCTCGG
GATGAGAGACCAAGGCCTTCTTCTCATCCTCCCTCCCTCCTTTCGTCCCT
CCCCCTTTCCCCTCAGCACCGTGACCAAAGAGGAAGCCGGGCTCATCTTC
GAGAACTTTAAGTTCATGAAGACGACCAAGGCATGGAAGGCCTTCGAGGC
CACCGGCAACGCCGACGACGAGGAGGCGGTCTCCGCAGCCATGATCAAGT
CGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTATCACCAAG
GACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATAAAGGATCTGAA
AGACAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGTCAAGAGCGGGG
ATGCCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAGACAAGTATCTG
GGTGGCGTCGATTTGGATGCGTTCGCGGACAACGAGTGGATCGAGCGGGC
CCGAGCCAAGTTTTTCGCCAATGAGGACTTGCTCCGCCTCATCGACGACA
ATGACGTTTTGGATATACTCAGAAACCCTGAGCTCAAGCTTCACAAGGCC
AGCGAGATGGGCAGCGCCGATCCCTCCCGATTGTTGTCCTCCCTTATGAG
CAGCCACGTGAACAACCACGGGAATGGGCAGGAGGCTATGGCCGGCGGGA
TTTGAGGAGGATACCGAAGGAGGGAGGGAGGGAGGGAGGGAGGAAGGG

protein sequence of jgi.p|Nanoce1779_2|578061

>mRNA_1820-protein ID=mRNA_1820-protein|Name=jgi.p|Nanoce1779_2|578061|organism=Nannochloropsis oceanica|type=polypeptide|length=218bp
MRDQGLLLILPPSFRPSPFPLSTVTKEEAGLIFENFKFMKTTKAWKAFEA
TGNADDEEAVSAAMIKSVQEMGKVIIAARPITKDADSVTAVTDEFIKDLK
DNDPSSAGLFDAVKSGDAMAIATLQQKFADKYLGGVDLDAFADNEWIERA
RAKFFANEDLLRLIDDNDVLDILRNPELKLHKASEMGSADPSRLLSSLMS
SHVNNHGNGQEAMAGGI*

mRNA from alignment at scaffold_4:93773..95595+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1820 ID=mRNA_1820|Name=jgi.p|Nanoce1779_2|578061|organism=Nannochloropsis oceanica|type=mRNA|length=1823bp|location=Sequence derived from alignment at scaffold_4:93773..95595+ (Nannochloropsis oceanica)
GAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGA
GGAGGAAGAATGGCCAGGAGAAGGCCTGTGTGTTTGGTTTTATGCGCATC
GATATCTCCCTTCAGGGCACGATCACTTCACCCGTGTCGTGATACCTCGG
GATGAGAGACCAAGGCCTTCTTCTCATCCTCCCTCCCTCCTTTCGTCCCT
CCCCCTTTCCCCTCAGCACCGTGACCAAAGAGGAAGCCGGGCTCATCTTC
GAGAACTTTAAGTTCATGAAGACGACCAAGGCATGGAAGGCCTTCGAGGC
CACCGGCAACGCCGACGACGAGGAGGCGGTACGTCATTCGACTTGCCCCT
TTTCCACCATGCATGCATGCCTTCCCTTCCTCCCTTCCTCCCTTCCTCAG
TCGTGCTCCTGTCCTTCCATACATGCCTTACCTTCCTCTCTCCTTCCCTT
TTTTAATAATATTAATAATAATAATAATGTTGTCCTCCCGCGTTGCATTT
ACTGGCATGGGTAGCGTCAGCGATGACAATGATTATCCTGAAAAGCCGGG
GATTTGCTTAACCCCCTCCCCCCTCCCCCCTCCCCCCTCCCCCCTCCCCC
CTCCCCCCTCTCCCCTCTCCCCTCCCCTTCCTTGCTTCCTGAATCGCTCC
CTCCCTCCCGCCCTCCCTACAGGTCTCCGCAGCCATGATCAAGTCGGTGC
AAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTATCACCAAGGACGCC
GACTCCGTCACGGCTGTCACGGATGAGTTCATAAAGGATGTAGGGAGGGA
GGGAAGAAGGAAGGGAGGGGCGGAGCGAGGGGAAATGAGTGTCCCTGCCT
AAAATCAAAAGAGGTCTGCTGTTAGGCACATGCGTTTGAGGCCCTCACTC
GCCCGCCCGCCCTCCCTCCCTCCCTCCCTCGCAGCTGAAAGACAACGACC
CTTCATCCGCCGGCCTGTTTGACGCGGTCAAGAGCGGGGATGCCATGGCC
ATCGCTACGCTGCAGCAGAAGTTTGCAGACAAGTATCTGGGTGGCGTCGA
TTTGGATGCGTTCGCGGTAGGAAGATTCGGGAGGGAAGATTCGGGAGGGA
GGGAGGGAGGTAGGGAGGGAGGGAGGCATGCCTCTCTCTGTGCCAATGGC
CCTTCCATGGCATTCCTCAGTGTCTGCCTGAATAGCAAGGATACCCTCCC
ATCCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGACA
ACGAGTGGATCGAGCGGGCCCGAGCCAAGTTTTTCGCCAATGAGGACTTG
CTCCGCCTCATCGACGACAATGACGTTTTGGATATACTCAGAAACCCTGA
GCTCAAGCTTCACAAGGCACGGCCGCCCTCCCTCCCTCCCTCCCTCCCTC
TCTCCTTCCGTTGTTCCACTTGGACGCTGACATCGTCATCATCGATCAAA
AAGCCTGAGCTTAATCTCCACGACGTCAACCCTTCCTCCCTCCCTCCCTC
CCTCCCTTCATCATTTCTTCTCTTTCTTCCCCTTCTCTCTCTCTCTTTCG
CCCCTGAGGTTTCAGACCTTTTATTCTTTCTCACGCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTGTTCCCTCCTCCCCTTCCCTCCCTCCTTAC
TCTTTCTCTCCCCTCCCTCCAGGCCAGCGAGATGGGCAGCGCCGATCCCT
CCCGATTGTTGTCCTCCCTTATGAGCAGCCACGTGAACAACCACGGGAAT
GGGCAGGAGGCTATGGCCGGCGGGATTTGAGGAGGATACCGAAGGAGGGA
GGGAGGGAGGGAGGGAGGAAGGG

Coding sequence (CDS) from alignment at scaffold_4:93773..95595+

>mRNA_1820 ID=mRNA_1820|Name=jgi.p|Nanoce1779_2|578061|organism=Nannochloropsis oceanica|type=CDS|length=3270bp|location=Sequence derived from alignment at scaffold_4:93773..95595+ (Nannochloropsis oceanica)
ATGAGAGACCAAGGCCTTCTTCTCATCCTCCCTCCCTCCTTTCGTCCCTC
CCCCTTTCCCCTCAGCACCGTGACCAAAGAGGAAGCCGGGCTCATCTTCG
AGAACTTTAAGTTCATGAAGACGACCAAGGCATGGAAGGCCTTCGAGGCC
ACCGGCAACGCCGACGACGAGGAGGCGGTCTCCGCAGCCATGATCAAGTC
GGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTATCACCAAGG
ACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATAAAGGATCTGAAA
GACAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGTCAAGAGCGGGGA
TGCCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAGACAAGTATCTGG
GTGGCGTCGATTTGGATGCGTTCGCGGACAACGAGTGGATCGAGCGGGCC
CGAGCCAAGTTTTTCGCCAATGAGGACTTGCTCCGCCTCATCGACGACAA
TGACGTTTTGGATATACTCAGAAACCCTGAGCTCAAGCTTCACAAGGCCA
GCGAGATGGGCAGCGCCGATCCCTCCCGATTGTTGTCCTCCCTTATGAGC
AGCCACGTGAACAACCACGGGAATGGGCAGGAGGCTATGGCCGGCGGGAT
TTGAATGAGAGACCAAGGCCTTCTTCTCATCCTCCCTCCCTCCTTTCGTC
CCTCCCCCTTTCCCCTCAGCACCGTGACCAAAGAGGAAGCCGGGCTCATC
TTCGAGAACTTTAAGTTCATGAAGACGACCAAGGCATGGAAGGCCTTCGA
GGCCACCGGCAACGCCGACGACGAGGAGGCGGTCTCCGCAGCCATGATCA
AGTCGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTATCACC
AAGGACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATAAAGGATCT
GAAAGACAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGTCAAGAGCG
GGGATGCCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAGACAAGTAT
CTGGGTGGCGTCGATTTGGATGCGTTCGCGGACAACGAGTGGATCGAGCG
GGCCCGAGCCAAGTTTTTCGCCAATGAGGACTTGCTCCGCCTCATCGACG
ACAATGACGTTTTGGATATACTCAGAAACCCTGAGCTCAAGCTTCACAAG
GCCAGCGAGATGGGCAGCGCCGATCCCTCCCGATTGTTGTCCTCCCTTAT
GAGCAGCCACGTGAACAACCACGGGAATGGGCAGGAGGCTATGGCCGGCG
GGATTTGAATGAGAGACCAAGGCCTTCTTCTCATCCTCCCTCCCTCCTTT
CGTCCCTCCCCCTTTCCCCTCAGCACCGTGACCAAAGAGGAAGCCGGGCT
CATCTTCGAGAACTTTAAGTTCATGAAGACGACCAAGGCATGGAAGGCCT
TCGAGGCCACCGGCAACGCCGACGACGAGGAGGCGGTCTCCGCAGCCATG
ATCAAGTCGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTAT
CACCAAGGACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATAAAGG
ATCTGAAAGACAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGTCAAG
AGCGGGGATGCCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAGACAA
GTATCTGGGTGGCGTCGATTTGGATGCGTTCGCGGACAACGAGTGGATCG
AGCGGGCCCGAGCCAAGTTTTTCGCCAATGAGGACTTGCTCCGCCTCATC
GACGACAATGACGTTTTGGATATACTCAGAAACCCTGAGCTCAAGCTTCA
CAAGGCCAGCGAGATGGGCAGCGCCGATCCCTCCCGATTGTTGTCCTCCC
TTATGAGCAGCCACGTGAACAACCACGGGAATGGGCAGGAGGCTATGGCC
GGCGGGATTTGAATGAGAGACCAAGGCCTTCTTCTCATCCTCCCTCCCTC
CTTTCGTCCCTCCCCCTTTCCCCTCAGCACCGTGACCAAAGAGGAAGCCG
GGCTCATCTTCGAGAACTTTAAGTTCATGAAGACGACCAAGGCATGGAAG
GCCTTCGAGGCCACCGGCAACGCCGACGACGAGGAGGCGGTCTCCGCAGC
CATGATCAAGTCGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCC
CTATCACCAAGGACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATA
AAGGATCTGAAAGACAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGT
CAAGAGCGGGGATGCCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAG
ACAAGTATCTGGGTGGCGTCGATTTGGATGCGTTCGCGGACAACGAGTGG
ATCGAGCGGGCCCGAGCCAAGTTTTTCGCCAATGAGGACTTGCTCCGCCT
CATCGACGACAATGACGTTTTGGATATACTCAGAAACCCTGAGCTCAAGC
TTCACAAGGCCAGCGAGATGGGCAGCGCCGATCCCTCCCGATTGTTGTCC
TCCCTTATGAGCAGCCACGTGAACAACCACGGGAATGGGCAGGAGGCTAT
GGCCGGCGGGATTTGAATGAGAGACCAAGGCCTTCTTCTCATCCTCCCTC
CCTCCTTTCGTCCCTCCCCCTTTCCCCTCAGCACCGTGACCAAAGAGGAA
GCCGGGCTCATCTTCGAGAACTTTAAGTTCATGAAGACGACCAAGGCATG
GAAGGCCTTCGAGGCCACCGGCAACGCCGACGACGAGGAGGCGGTCTCCG
CAGCCATGATCAAGTCGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCT
CGCCCTATCACCAAGGACGCCGACTCCGTCACGGCTGTCACGGATGAGTT
CATAAAGGATCTGAAAGACAACGACCCTTCATCCGCCGGCCTGTTTGACG
CGGTCAAGAGCGGGGATGCCATGGCCATCGCTACGCTGCAGCAGAAGTTT
GCAGACAAGTATCTGGGTGGCGTCGATTTGGATGCGTTCGCGGACAACGA
GTGGATCGAGCGGGCCCGAGCCAAGTTTTTCGCCAATGAGGACTTGCTCC
GCCTCATCGACGACAATGACGTTTTGGATATACTCAGAAACCCTGAGCTC
AAGCTTCACAAGGCCAGCGAGATGGGCAGCGCCGATCCCTCCCGATTGTT
GTCCTCCCTTATGAGCAGCCACGTGAACAACCACGGGAATGGGCAGGAGG
CTATGGCCGGCGGGATTTGA

Synonyms

Publications