jgi.p|Nanoce1779_2|578476, mRNA_1941 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578476
Unique NamemRNA_1941
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_4:404259..405769 +

Link to JBrowse

Properties
Property NameValue
TranscriptId578562
TrackFilteredModels2
ProteinId578476
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:404259..405769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578476gene_1941Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578476mRNA_1941-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1941CDS_1941Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1941 ID=mRNA_1941|Name=jgi.p|Nanoce1779_2|578476|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
AACAGCGGCAGGTTTGGGGATAGAGACCACATCTTGTCAACATGAAGCTA
TCATCATGCGCTGGCATCAGCAACCGCGGGTCAAGGCGAGTCTCCTCGGC
ACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTGCGTTGGCAA
TGACCGTGGATAGTTTTGTTGTCCTACCAGTAAGCCAGAGAACGGGATCG
CTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGAGGGAGGGGA
GGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGGCAGGGCTGG
TGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAGCTGGTGGGA
GCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGGCGAGAAGAA
GATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGGTACGAGACA
ACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACCTTTGAAAAA
GGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAATGGGGACTA
CATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATGTGGGAGATA
CGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAGGGGGCAGAG
ATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGATTTCTGTTCC
GCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAACCGCAAACGT
TTGGAGGGAAGAGGAAATTGTTGAACCACCAGAACGAGTTTCTGCAGTTT
GAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAAGGAGAAGGAGG
AGGAGGAAGGGTGGAATGGATGAATAGAATAAGGACATGGGGGAAGCTTA
ACTTATGAATGCATTCCGGCAAAGCTCTGCATAAAAGAGAAATGAGGAAA
AGCAGAGAATGAGATAATACCGAACAATGCTCACCGTCCGCGATAATCCG
AGCCCTCGTTTCCTTCTCCTTCTTCAACCGTCGCTCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|578476

>mRNA_1941-protein ID=mRNA_1941-protein|Name=jgi.p|Nanoce1779_2|578476|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MKLSSCAGISNRGSRRVSSALLLAPLLVLHNLLALAMTVDSFVVLPVSQR
TGSLARVCGQGRSATREGGEVDRKALLREAVKKAGLVAGGWGVAAAGLPQ
LVGAKKIINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPT
FEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPK
GAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEF
LQFEVEVIRSRPRKT*
back to top

mRNA from alignment at scaffold_4:404259..405769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1941 ID=mRNA_1941|Name=jgi.p|Nanoce1779_2|578476|organism=Nannochloropsis oceanica|type=mRNA|length=1511bp|location=Sequence derived from alignment at scaffold_4:404259..405769+ (Nannochloropsis oceanica)
AACAGCGGCAGGTTTGGGGATAGAGACCACATCTTGTCAACATGAAGCTA
TCATCATGCGCTGGCATCAGCAACCGCGGGTCAAGGCGAGTCTCCTCGGC
ACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTGCGTTGGCAA
TGACCGTGGATAGTTTTGTTGTCCTACCAGTAAGCCAGAGAACGGGATCG
CTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGAGGGAGGGGA
GGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGGCAGGGCTGG
TGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAGCTGGTGGGA
GCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGGCGAGAAGAA
GATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGGTGCGTGGTA
GGGGAGGGGAGGTGGGCATGTGGAGTGTTTGGCGTAACTATTGCTCAAAT
GACAGCATAGCATGGTATTGTTGTTGTTCTGATGTCTCTGTCTACTCATC
ATGCGTTTCCTCGCCCAACAACACACTCAACAAAGGTACGAGACAACGTA
AAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACCTTTGAAAAAGGCGA
CCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAATGGGGACTACATGT
TTTCCACGGGCTATGGGCGAGAATTCCAGGATGATGTGGGAGGTGAGGGA
GGGGGCCAGGGGACGGGGGGGACGGGGGTCGTATGGGCTCGTGAGATAGC
AAGCGTAGGATGAAATGCTGCGAAAGGCAACAACAATAGCGCGGCAGTCA
TTTCCTACATGCACTCACAAGTCTTCATCTCATTCCCTTCTCCGCTCCCT
CCCTCCCTTCCTTCCTACCTCCCTCCGCTCATTCCTCAGATACGTATGAC
TTCACGTTCGGCCGTCCCAATTCCATCCCCAAGGGGGCAGAGATCGGTAT
GGAAGGCATGCGTGTGGGGGGGAAACGCAAGATTTCTGTTCCGCCCGAGC
TGGGGTGGAAGACCTCAGGGGGTTTTCCGGAACCGCAAACGTTTGGAGGG
AAGAGGAAATTGTTGAACCACCAGAACGAGTTTCTGCAGTTTGAAGTGGA
AGTAATTAGGTCCCGGCCGCGGAAGACATAAGGAGAAGGAGGAGGAGGAA
GGGTGGAATGGATGAATAGAATAAGGACATGGGGGAAGCTTAACTTATGA
ATGCATTCCGGCAAAGCTCTGCATAAAAGAGAAATGAGGAAAAGCAGAGA
ATGAGATAATACCGAACAATGCTCACCGGTAAGCCACGAGGGCTAAGCTT
GCTGTGAAGCTTGTGCAATTGCCATCTTTCTCTCTTTCTTCCAATTGCTG
TACATTCTTCTGTATGTCATGCATTCACTTTCTCTCCTACCCTTCACTCC
CCGTTCAAGTCCGCGATAATCCGAGCCCTCGTTTCCTTCTCCTTCTTCAA
CCGTCGCTCCC
back to top

Coding sequence (CDS) from alignment at scaffold_4:404259..405769+

>mRNA_1941 ID=mRNA_1941|Name=jgi.p|Nanoce1779_2|578476|organism=Nannochloropsis oceanica|type=CDS|length=2394bp|location=Sequence derived from alignment at scaffold_4:404259..405769+ (Nannochloropsis oceanica)
ATGAAGCTATCATCATGCGCTGGCATCAGCAACCGCGGGTCAAGGCGAGT
CTCCTCGGCACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTG
CGTTGGCAATGACCGTGGATAGTTTTGTTGTCCTACCAGTAAGCCAGAGA
ACGGGATCGCTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGA
GGGAGGGGAGGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGG
CAGGGCTGGTGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAG
CTGGTGGGAGCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGG
CGAGAAGAAGATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGG
TACGAGACAACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACC
TTTGAAAAAGGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAA
TGGGGACTACATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATG
TGGGAGATACGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAG
GGGGCAGAGATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGAT
TTCTGTTCCGCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAAC
CGCAAACGTTTGGAGGGAAGAGGAAATTGTTGAACCACCAGAACGAGTTT
CTGCAGTTTGAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAAAT
GAAGCTATCATCATGCGCTGGCATCAGCAACCGCGGGTCAAGGCGAGTCT
CCTCGGCACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTGCG
TTGGCAATGACCGTGGATAGTTTTGTTGTCCTACCAGTAAGCCAGAGAAC
GGGATCGCTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGAGG
GAGGGGAGGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGGCA
GGGCTGGTGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAGCT
GGTGGGAGCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGGCG
AGAAGAAGATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGGTA
CGAGACAACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACCTT
TGAAAAAGGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAATG
GGGACTACATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATGTG
GGAGATACGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAGGG
GGCAGAGATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGATTT
CTGTTCCGCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAACCG
CAAACGTTTGGAGGGAAGAGGAAATTGTTGAACCACCAGAACGAGTTTCT
GCAGTTTGAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAAATGA
AGCTATCATCATGCGCTGGCATCAGCAACCGCGGGTCAAGGCGAGTCTCC
TCGGCACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTGCGTT
GGCAATGACCGTGGATAGTTTTGTTGTCCTACCAGTAAGCCAGAGAACGG
GATCGCTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGAGGGA
GGGGAGGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGGCAGG
GCTGGTGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAGCTGG
TGGGAGCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGGCGAG
AAGAAGATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGGTACG
AGACAACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACCTTTG
AAAAAGGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAATGGG
GACTACATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATGTGGG
AGATACGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAGGGGG
CAGAGATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGATTTCT
GTTCCGCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAACCGCA
AACGTTTGGAGGGAAGAGGAAATTGTTGAACCACCAGAACGAGTTTCTGC
AGTTTGAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAA
back to top
Synonyms
Publications