jgi.p|Nanoce1779_2|578671, mRNA_1989 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578671
Unique NamemRNA_1989
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1347
Alignment locationscaffold_4:511676..513022 +

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Properties
Property NameValue
TranscriptId578757
TrackFilteredModels2
ProteinId578671
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:511676..513022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578671gene_1989Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578671mRNA_1989-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1989CDS_1989Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1989 ID=mRNA_1989|Name=jgi.p|Nanoce1779_2|578671|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
GAGGATGAGGACGAAAGGCTACGGGGCCGAGGAGGGGGAGGGGAGGGAGG
AGGAAGAGGAGGAAGGGGAGGAGGAAGAGAAGGAAGATCAGGAGGAGGGA
GATGTTGGTGCTCGTAAATCGGCCGCTGCAGCTGCGCGAAATCAGAATAA
GAAAGCGAAAAGGCGTATAGACGAAGAGGAGGAGCACGAAGACGACGGGG
AGGGTGCACATATTAGGAAGAGAGATAAGTCAATGGGAAGAGCAGCGGCG
GCAGAAGCAGCAAAGAGAAGTCGGCTGCAAGAGATTGTGGAGGAAGACGA
GGACATACGACAGACCCTCAGCAGGTCCGCCACGGCCAATGCCGCCATCG
CTACCGGCCTAGGGCAAGGTGAGTTTTCTCTTTCCTCGTTGCTAGCAGCG
GGGGATAGTCTGCTCTGGAAGGTGGGCTTGGAACAGTTCCATCGGGACTT
GCGGCATGTGTGTTGTGTGAAGTTTGTCAGGCAGAAGGTGAACACCACGG
CCGAGTCCCTTGTGCGGTCCATCTTAGAGCACAGCTTGCCATTGGAGCAT
GGAGATGTGGTGAATTGTGAACGGTCCCGGGGTCTAAGCTTGGCGGAGTT
GACGAGGAAAGTGTCGTTGCCGCCCAGTGTGACGGTGAAGATGTACATGG
ACGTGCTGCAAAATGACCCCGTGCGGGTCGTGGGGTTTGAGGGAGGGGGA
AGCGGAGGGGTCTACAGTGTGTTTTTGGGAAATATCTGCGAGAATTTGAG
ACAGAGGACAATGCATAGTATTGTGAGGGAAAGATATAGCAGTGACGCGA
AGAGTAGTGATGGGGATCGGAACGCGCGGATTTGCAGGGTATTGTTGGAG
AAGAAATTCTTGGATCAACAGCAACTAAGTGAGATGGCCATGATGAGTTT
GCGGGAGACGAGGGAAAGGTTATATTACATGTATATGGACGAGATGGTGA
CTTTCCAGGAAATTCCTCGCAGAGCGGATCATCACCCGAACCAGACGTTT
TTCCTGTGGACTTTCAACATGAAGCAGGTCGGGGAGGAAGTCGTGCAAAG
GATGTACAAAGGGGCATTAAATTTACGCTTGAGACGACAGAAGGAAACTG
AGGAGAAGAAAGATTTGTTGGCCAATAAGGACAATATCAGGGATGAGGTA
GAGGCTGCGCATTTTGACCAGTTGACCATAGCGCTGGATCGACTCGACCA
GGCATTAGAGAATCTAGATGAGACCCTCATGTTGTTTACGGTGTTTTAGG
GCCGTTTGAGGATCGTGATGAATCTGAACAGTTTCGATCGCGCCTCGGTG
GACGACACGCTCTTGCTGATTACAGTGCCGGAGGGAGGGAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|578671

>mRNA_1989-protein ID=mRNA_1989-protein|Name=jgi.p|Nanoce1779_2|578671|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MRTKGYGAEEGEGREEEEEEGEEEEKEDQEEGDVGARKSAAAAARNQNKK
AKRRIDEEEEHEDDGEGAHIRKRDKSMGRAAAAEAAKRSRLQEIVEEDED
IRQTLSRSATANAAIATGLGQGEFSLSSLLAAGDSLLWKVGLEQFHRDLR
HVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAELT
RKVSLPPSVTVKMYMDVLQNDPVRVVGFEGGGSGGVYSVFLGNICENLRQ
RTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLR
ETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRM
YKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQA
LENLDETLMLFTVF*
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mRNA from alignment at scaffold_4:511676..513022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1989 ID=mRNA_1989|Name=jgi.p|Nanoce1779_2|578671|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_4:511676..513022+ (Nannochloropsis oceanica)
GAGGATGAGGACGAAAGGCTACGGGGCCGAGGAGGGGGAGGGGAGGGAGG
AGGAAGAGGAGGAAGGGGAGGAGGAAGAGAAGGAAGATCAGGAGGAGGGA
GATGTTGGTGCTCGTAAATCGGCCGCTGCAGCTGCGCGAAATCAGAATAA
GAAAGCGAAAAGGCGTATAGACGAAGAGGAGGAGCACGAAGACGACGGGG
AGGGTGCACATATTAGGAAGAGAGATAAGTCAATGGGAAGAGCAGCGGCG
GCAGAAGCAGCAAAGAGAAGTCGGCTGCAAGAGATTGTGGAGGAAGACGA
GGACATACGACAGACCCTCAGCAGGTCCGCCACGGCCAATGCCGCCATCG
CTACCGGCCTAGGGCAAGGTGAGTTTTCTCTTTCCTCGTTGCTAGCAGCG
GGGGATAGTCTGCTCTGGAAGGTGGGCTTGGAACAGTTCCATCGGGACTT
GCGGCATGTGTGTTGTGTGAAGTTTGTCAGGCAGAAGGTGAACACCACGG
CCGAGTCCCTTGTGCGGTCCATCTTAGAGCACAGCTTGCCATTGGAGCAT
GGAGATGTGGTGAATTGTGAACGGTCCCGGGGTCTAAGCTTGGCGGAGTT
GACGAGGAAAGTGTCGTTGCCGCCCAGTGTGACGGTGAAGATGTACATGG
ACGTGCTGCAAAATGACCCCGTGCGGGTCGTGGGGTTTGAGGGAGGGGGA
AGCGGAGGGGTCTACAGTGTGTTTTTGGGAAATATCTGCGAGAATTTGAG
ACAGAGGACAATGCATAGTATTGTGAGGGAAAGATATAGCAGTGACGCGA
AGAGTAGTGATGGGGATCGGAACGCGCGGATTTGCAGGGTATTGTTGGAG
AAGAAATTCTTGGATCAACAGCAACTAAGTGAGATGGCCATGATGAGTTT
GCGGGAGACGAGGGAAAGGTTATATTACATGTATATGGACGAGATGGTGA
CTTTCCAGGAAATTCCTCGCAGAGCGGATCATCACCCGAACCAGACGTTT
TTCCTGTGGACTTTCAACATGAAGCAGGTCGGGGAGGAAGTCGTGCAAAG
GATGTACAAAGGGGCATTAAATTTACGCTTGAGACGACAGAAGGAAACTG
AGGAGAAGAAAGATTTGTTGGCCAATAAGGACAATATCAGGGATGAGGTA
GAGGCTGCGCATTTTGACCAGTTGACCATAGCGCTGGATCGACTCGACCA
GGCATTAGAGAATCTAGATGAGACCCTCATGTTGTTTACGGTGTTTTAGG
GCCGTTTGAGGATCGTGATGAATCTGAACAGTTTCGATCGCGCCTCGGTG
GACGACACGCTCTTGCTGATTACAGTGCCGGAGGGAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_4:511676..513022+

>mRNA_1989 ID=mRNA_1989|Name=jgi.p|Nanoce1779_2|578671|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at scaffold_4:511676..513022+ (Nannochloropsis oceanica)
ATGAGGACGAAAGGCTACGGGGCCGAGGAGGGGGAGGGGAGGGAGGAGGA
AGAGGAGGAAGGGGAGGAGGAAGAGAAGGAAGATCAGGAGGAGGGAGATG
TTGGTGCTCGTAAATCGGCCGCTGCAGCTGCGCGAAATCAGAATAAGAAA
GCGAAAAGGCGTATAGACGAAGAGGAGGAGCACGAAGACGACGGGGAGGG
TGCACATATTAGGAAGAGAGATAAGTCAATGGGAAGAGCAGCGGCGGCAG
AAGCAGCAAAGAGAAGTCGGCTGCAAGAGATTGTGGAGGAAGACGAGGAC
ATACGACAGACCCTCAGCAGGTCCGCCACGGCCAATGCCGCCATCGCTAC
CGGCCTAGGGCAAGGTGAGTTTTCTCTTTCCTCGTTGCTAGCAGCGGGGG
ATAGTCTGCTCTGGAAGGTGGGCTTGGAACAGTTCCATCGGGACTTGCGG
CATGTGTGTTGTGTGAAGTTTGTCAGGCAGAAGGTGAACACCACGGCCGA
GTCCCTTGTGCGGTCCATCTTAGAGCACAGCTTGCCATTGGAGCATGGAG
ATGTGGTGAATTGTGAACGGTCCCGGGGTCTAAGCTTGGCGGAGTTGACG
AGGAAAGTGTCGTTGCCGCCCAGTGTGACGGTGAAGATGTACATGGACGT
GCTGCAAAATGACCCCGTGCGGGTCGTGGGGTTTGAGGGAGGGGGAAGCG
GAGGGGTCTACAGTGTGTTTTTGGGAAATATCTGCGAGAATTTGAGACAG
AGGACAATGCATAGTATTGTGAGGGAAAGATATAGCAGTGACGCGAAGAG
TAGTGATGGGGATCGGAACGCGCGGATTTGCAGGGTATTGTTGGAGAAGA
AATTCTTGGATCAACAGCAACTAAGTGAGATGGCCATGATGAGTTTGCGG
GAGACGAGGGAAAGGTTATATTACATGTATATGGACGAGATGGTGACTTT
CCAGGAAATTCCTCGCAGAGCGGATCATCACCCGAACCAGACGTTTTTCC
TGTGGACTTTCAACATGAAGCAGGTCGGGGAGGAAGTCGTGCAAAGGATG
TACAAAGGGGCATTAAATTTACGCTTGAGACGACAGAAGGAAACTGAGGA
GAAGAAAGATTTGTTGGCCAATAAGGACAATATCAGGGATGAGGTAGAGG
CTGCGCATTTTGACCAGTTGACCATAGCGCTGGATCGACTCGACCAGGCA
TTAGAGAATCTAGATGAGACCCTCATGTTGTTTACGGTGTTTTAG
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Synonyms
Publications