jgi.p|Nanoce1779_2|579763, mRNA_2289 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579763
Unique NamemRNA_2289
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length486
Alignment locationscaffold_4:1292592..1293077 -

Link to JBrowse

Properties
Property NameValue
TranscriptId579849
TrackFilteredModels2
ProteinId579763
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1292592..1293077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579763gene_2289Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579763mRNA_2289-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2289CDS_2289Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2289 ID=mRNA_2289|Name=jgi.p|Nanoce1779_2|579763|organism=Nannochloropsis oceanica|type=mRNA|length=486bp
TGAACAAAAACAAATGAGCTATGTGATCGAGACCTTATTTATGTTGTGTG
TTCTATTTTCGCAAATTGTCGTCTTTTGTCGTTGTGGTGCAATGTACTGC
CTTTTGCATCCGTATTATCCACCAGCTCCGACCTCCTTTGCCAGATCGCT
ACGGAGAGCGACACTGATGGATTCAAGAGTGAAGCTTTTGACACTCTAGT
CTACATTATGCAATGCCTTCTCCTTGTCCTTTGCACGTTGTATGTGAGTC
CACGCGCAATAAGAATGCTTTTATCCCGCGAGACCAACGCGATCCTAGAT
CCCCTTGCATGCCTCCCCAACCCCCCAGCCTTGCCTCTCCACAGCACCAC
CAACCCACGCCCTATCACTCCGTCGTCGATATTCACACACTTTCTCTTTT
CACAAATACATAGGCCCCTCTTCGCATCACCCTCAAGGTATTGAATGCCT
TCCTTCTCCCTCGCCTTTGATCTGCCGTCGTTCCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|579763

>mRNA_2289-protein ID=mRNA_2289-protein|Name=jgi.p|Nanoce1779_2|579763|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MQCLLLVLCTLYVSPRAIRMLLSRETNAILDPLACLPNPPALPLHSTTNP
RPITPSSIFTHFLFSQIHRPLFASPSRY*
back to top

mRNA from alignment at scaffold_4:1292592..1293077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2289 ID=mRNA_2289|Name=jgi.p|Nanoce1779_2|579763|organism=Nannochloropsis oceanica|type=mRNA|length=486bp|location=Sequence derived from alignment at scaffold_4:1292592..1293077- (Nannochloropsis oceanica)
TGAACAAAAACAAATGAGCTATGTGATCGAGACCTTATTTATGTTGTGTG
TTCTATTTTCGCAAATTGTCGTCTTTTGTCGTTGTGGTGCAATGTACTGC
CTTTTGCATCCGTATTATCCACCAGCTCCGACCTCCTTTGCCAGATCGCT
ACGGAGAGCGACACTGATGGATTCAAGAGTGAAGCTTTTGACACTCTAGT
CTACATTATGCAATGCCTTCTCCTTGTCCTTTGCACGTTGTATGTGAGTC
CACGCGCAATAAGAATGCTTTTATCCCGCGAGACCAACGCGATCCTAGAT
CCCCTTGCATGCCTCCCCAACCCCCCAGCCTTGCCTCTCCACAGCACCAC
CAACCCACGCCCTATCACTCCGTCGTCGATATTCACACACTTTCTCTTTT
CACAAATACATAGGCCCCTCTTCGCATCACCCTCAAGGTATTGAATGCCT
TCCTTCTCCCTCGCCTTTGATCTGCCGTCGTTCCTG
back to top

Coding sequence (CDS) from alignment at scaffold_4:1292592..1293077-

>mRNA_2289 ID=mRNA_2289|Name=jgi.p|Nanoce1779_2|579763|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_4:1292592..1293077- (Nannochloropsis oceanica)
ATGCAATGCCTTCTCCTTGTCCTTTGCACGTTGTATGTGAGTCCACGCGC
AATAAGAATGCTTTTATCCCGCGAGACCAACGCGATCCTAGATCCCCTTG
CATGCCTCCCCAACCCCCCAGCCTTGCCTCTCCACAGCACCACCAACCCA
CGCCCTATCACTCCGTCGTCGATATTCACACACTTTCTCTTTTCACAAAT
ACATAGGCCCCTCTTCGCATCACCCTCAAGGTATTGA
back to top
Synonyms
Publications