jgi.p|Nanoce1779_2|579466, mRNA_2205 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579466
Unique NamemRNA_2205
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length953
Alignment locationscaffold_4:1056461..1057413 -

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Properties
Property NameValue
TranscriptId579552
TrackFilteredModels2
ProteinId579466
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1056461..1057413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579466gene_2205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579466mRNA_2205-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2205CDS_2205Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2205 ID=mRNA_2205|Name=jgi.p|Nanoce1779_2|579466|organism=Nannochloropsis oceanica|type=mRNA|length=953bp
GAATAAATTTTTATGACACCATGACAACACAATCGGAAGGGCTCGAAGCG
TTGATTGCCGCCCAAGAAGCGGTGGGCCCGCCCTCCCTGGCACCACAACC
CATTTTTGTCAACCCCAAGCAATACGAACGCATCATGAAGCGACGCGAGG
CACGGGCTCGATTGGAGAACCACCGGAAGGTCGTCGCAGAACGGAAGCCC
TTTCTTCATAAATCTAGGCACGAGCATGCCATCAAGCGACCTCGGGGGCC
TGGAGGTCGGTTTTTGACCAAGGAAGAACGCATCGCATGGGATGAGGAGC
AAGCACGGCTCGAGGCGCCAGTGACGGCTGCTGCGAAAGGAGGAGGAGGG
GTGGGAGAAGAAGGCGATGGTGAGGAAGGGAGGCGCATACACCAAAATGC
GCGTACATCGAAGCCATCCCGCGCAATTTTGGCTCCGCAGCCCGTGGGGA
TATATCCTTCAGCCCCAGAGCAACAACGACAACGAAGACAGCACCACCCT
TCCCATAGCCATTCCTCCTCCTCGTCCTCCCCGGCCTCCTTCTCTTCCTC
TTGGGACCCGGTGGACAAGGGACTGAAGCAGCCCACTCGGTCATGATACC
ATATTCCCGAGCATGCAACCAGTAGGAAGAGATGCCTCTCTCCCCCGTCC
CCCCCTTCACCCTCCTTTTACCCACAAAATGAAAAAGCGTCGTCTCTCTT
TTTCAATGCCCTCCCATGCAGGAAGCCACCCCAAAAATTAGATATGAGCA
ATGTATATGTCTCTGGTTCATAGATGCCACAAACCAAAGGAAGAAAAACG
AAGTTTTGAAACAACGTCAACGGCCCAACGTCGTGTCAGCCTTGTCCGTG
TGTGAGAGAGTGACAGAGTGTCTGCCCGTCATATGGGGACAATTTACTCC
CGCCCCTTTCATCAAGAGCCCGTCAACAACAAAGAAAGGACTCATATCAA
TGG
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protein sequence of jgi.p|Nanoce1779_2|579466

>mRNA_2205-protein ID=mRNA_2205-protein|Name=jgi.p|Nanoce1779_2|579466|organism=Nannochloropsis oceanica|type=polypeptide|length=192bp
MTTQSEGLEALIAAQEAVGPPSLAPQPIFVNPKQYERIMKRREARARLEN
HRKVVAERKPFLHKSRHEHAIKRPRGPGGRFLTKEERIAWDEEQARLEAP
VTAAAKGGGGVGEEGDGEEGRRIHQNARTSKPSRAILAPQPVGIYPSAPE
QQRQRRQHHPSHSHSSSSSSPASFSSSWDPVDKGLKQPTRS*
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mRNA from alignment at scaffold_4:1056461..1057413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2205 ID=mRNA_2205|Name=jgi.p|Nanoce1779_2|579466|organism=Nannochloropsis oceanica|type=mRNA|length=953bp|location=Sequence derived from alignment at scaffold_4:1056461..1057413- (Nannochloropsis oceanica)
GAATAAATTTTTATGACACCATGACAACACAATCGGAAGGGCTCGAAGCG
TTGATTGCCGCCCAAGAAGCGGTGGGCCCGCCCTCCCTGGCACCACAACC
CATTTTTGTCAACCCCAAGCAATACGAACGCATCATGAAGCGACGCGAGG
CACGGGCTCGATTGGAGAACCACCGGAAGGTCGTCGCAGAACGGAAGCCC
TTTCTTCATAAATCTAGGCACGAGCATGCCATCAAGCGACCTCGGGGGCC
TGGAGGTCGGTTTTTGACCAAGGAAGAACGCATCGCATGGGATGAGGAGC
AAGCACGGCTCGAGGCGCCAGTGACGGCTGCTGCGAAAGGAGGAGGAGGG
GTGGGAGAAGAAGGCGATGGTGAGGAAGGGAGGCGCATACACCAAAATGC
GCGTACATCGAAGCCATCCCGCGCAATTTTGGCTCCGCAGCCCGTGGGGA
TATATCCTTCAGCCCCAGAGCAACAACGACAACGAAGACAGCACCACCCT
TCCCATAGCCATTCCTCCTCCTCGTCCTCCCCGGCCTCCTTCTCTTCCTC
TTGGGACCCGGTGGACAAGGGACTGAAGCAGCCCACTCGGTCATGATACC
ATATTCCCGAGCATGCAACCAGTAGGAAGAGATGCCTCTCTCCCCCGTCC
CCCCCTTCACCCTCCTTTTACCCACAAAATGAAAAAGCGTCGTCTCTCTT
TTTCAATGCCCTCCCATGCAGGAAGCCACCCCAAAAATTAGATATGAGCA
ATGTATATGTCTCTGGTTCATAGATGCCACAAACCAAAGGAAGAAAAACG
AAGTTTTGAAACAACGTCAACGGCCCAACGTCGTGTCAGCCTTGTCCGTG
TGTGAGAGAGTGACAGAGTGTCTGCCCGTCATATGGGGACAATTTACTCC
CGCCCCTTTCATCAAGAGCCCGTCAACAACAAAGAAAGGACTCATATCAA
TGG
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Coding sequence (CDS) from alignment at scaffold_4:1056461..1057413-

>mRNA_2205 ID=mRNA_2205|Name=jgi.p|Nanoce1779_2|579466|organism=Nannochloropsis oceanica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_4:1056461..1057413- (Nannochloropsis oceanica)
ATGACAACACAATCGGAAGGGCTCGAAGCGTTGATTGCCGCCCAAGAAGC
GGTGGGCCCGCCCTCCCTGGCACCACAACCCATTTTTGTCAACCCCAAGC
AATACGAACGCATCATGAAGCGACGCGAGGCACGGGCTCGATTGGAGAAC
CACCGGAAGGTCGTCGCAGAACGGAAGCCCTTTCTTCATAAATCTAGGCA
CGAGCATGCCATCAAGCGACCTCGGGGGCCTGGAGGTCGGTTTTTGACCA
AGGAAGAACGCATCGCATGGGATGAGGAGCAAGCACGGCTCGAGGCGCCA
GTGACGGCTGCTGCGAAAGGAGGAGGAGGGGTGGGAGAAGAAGGCGATGG
TGAGGAAGGGAGGCGCATACACCAAAATGCGCGTACATCGAAGCCATCCC
GCGCAATTTTGGCTCCGCAGCCCGTGGGGATATATCCTTCAGCCCCAGAG
CAACAACGACAACGAAGACAGCACCACCCTTCCCATAGCCATTCCTCCTC
CTCGTCCTCCCCGGCCTCCTTCTCTTCCTCTTGGGACCCGGTGGACAAGG
GACTGAAGCAGCCCACTCGGTCATGA
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Synonyms
Publications