jgi.p|Nanoce1779_2|609876, mRNA_10272 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609876
Unique NamemRNA_10272
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length400
Alignment locationscaffold_47:101778..102177 -

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Properties
Property NameValue
TranscriptId609962
TrackFilteredModels2
ProteinId609876
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:101778..102177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609876gene_10272Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609876mRNA_10272-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10272CDS_10272Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10272 ID=mRNA_10272|Name=jgi.p|Nanoce1779_2|609876|organism=Nannochloropsis oceanica|type=mRNA|length=400bp
AAGCGAGCAAGTAAGCGACCACCTGGAGCGGGTCTTGTCTCTTGTCTCAT
GTATGATGCCCATTCCTATTTTTCCAGGCACTTCTTGTGCCTGTATGAGA
CTACTTTCGCTCAATGTTGCGATGGTGTGTATTGCAATGGCCTCGCTTAT
CATCTTCCGTCTTTCTTTTTCTCCCGTCCCGGGCCCACGAGAGCTATCAA
TAAGCAACAAGCGACGACTGCAACAAACAGACGCCTCAGCCTCGCATATA
GATGCGTGTCTATCTTCTTGGGACCTTGGTATGGAGGGAGATAGAAGCCA
AGCTCAGCATGCCGGCAAGGGCATGGCCACTGCGGCTTCTTTCGCAGCCA
GGCGCTTCTTTAATGGGAAATAGCTTCATCAAAATCCCCGTCCAAAGGAG
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protein sequence of jgi.p|Nanoce1779_2|609876

>mRNA_10272-protein ID=mRNA_10272-protein|Name=jgi.p|Nanoce1779_2|609876|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MMPIPIFPGTSCACMRLLSLNVAMVCIAMASLIIFRLSFSPVPGPRELSI
SNKRRLQQTDASASHIDACLSSWDLGMEGDRSQAQHAGKGMATAASFAAR
RFFNGK*
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mRNA from alignment at scaffold_47:101778..102177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10272 ID=mRNA_10272|Name=jgi.p|Nanoce1779_2|609876|organism=Nannochloropsis oceanica|type=mRNA|length=400bp|location=Sequence derived from alignment at scaffold_47:101778..102177- (Nannochloropsis oceanica)
AAGCGAGCAAGTAAGCGACCACCTGGAGCGGGTCTTGTCTCTTGTCTCAT
GTATGATGCCCATTCCTATTTTTCCAGGCACTTCTTGTGCCTGTATGAGA
CTACTTTCGCTCAATGTTGCGATGGTGTGTATTGCAATGGCCTCGCTTAT
CATCTTCCGTCTTTCTTTTTCTCCCGTCCCGGGCCCACGAGAGCTATCAA
TAAGCAACAAGCGACGACTGCAACAAACAGACGCCTCAGCCTCGCATATA
GATGCGTGTCTATCTTCTTGGGACCTTGGTATGGAGGGAGATAGAAGCCA
AGCTCAGCATGCCGGCAAGGGCATGGCCACTGCGGCTTCTTTCGCAGCCA
GGCGCTTCTTTAATGGGAAATAGCTTCATCAAAATCCCCGTCCAAAGGAG
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Coding sequence (CDS) from alignment at scaffold_47:101778..102177-

>mRNA_10272 ID=mRNA_10272|Name=jgi.p|Nanoce1779_2|609876|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_47:101778..102177- (Nannochloropsis oceanica)
ATGATGCCCATTCCTATTTTTCCAGGCACTTCTTGTGCCTGTATGAGACT
ACTTTCGCTCAATGTTGCGATGGTGTGTATTGCAATGGCCTCGCTTATCA
TCTTCCGTCTTTCTTTTTCTCCCGTCCCGGGCCCACGAGAGCTATCAATA
AGCAACAAGCGACGACTGCAACAAACAGACGCCTCAGCCTCGCATATAGA
TGCGTGTCTATCTTCTTGGGACCTTGGTATGGAGGGAGATAGAAGCCAAG
CTCAGCATGCCGGCAAGGGCATGGCCACTGCGGCTTCTTTCGCAGCCAGG
CGCTTCTTTAATGGGAAATAG
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Synonyms
Publications