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Properties
| Property Name | Value |
|---|
| TranscriptId | 560937 |
| Track | FilteredModels2 |
| ProteinId | 560851 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:135172..137718 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10000 ID=mRNA_10000|Name=jgi.p|Nanoce1779_2|560851|organism=Nannochloropsis oceanica|type=mRNA|length=2330bp
GGGATATCGATTGATGATGAGGATGGAAGCAAAGAAGGCATCTTGCCAAG
AGGGCGAAGCGGCAGAAGCCTCTGCCTCCGAGAGAAGACGTTATTCGTGG
TTGGTGCTCTTGCCTCCTCTTTCAATGCGATGCAATGCCTGCCAAACGCA
CTCCACAACTTCCATCAAAGTTTGCACAGATCTCTTTAATTGCTACTGAT
TGTACGGCCTGTCTGGTCTTTGCTTTTCCGTGTGCGGATGTCCCCTCGTT
CTGGCATCGCCAGTCGCATCGAATTTCAAAGTGTGGGCCGCCAACGCTTC
CTTGCACTAGACAGAGACATCGCCTGGAGATAACCTCACGCACGTCTCCA
CCTTTATCTTACAGGCCGTCGAGGAGCTGGGGTATATTCGTTGCTGTGCC
CTGCCTTACTGTAGGTCTCGTTTTGGACCCTGCACGTCAAGCTCTCCGGT
ATAGTAGCCGCTGCCGCCGCAAGACGCCATAACACAAGGGACCCTCTTTC
CCCCTACACCACCTATATACCACCATAAGCAGCAGCACCATCACTACGAT
CAGCGCCTACTCTGTCCCCCTTTCACCTCGACCATTACCACGCTCTTCCT
CTCGCTCCGTAGCGAAATCACCCCACACCCTGCCCCAATCACATAATGGA
CGAAGACAACATTATCTTCTCCCCTGAAGACCCCAACGAGGTTTATGAAC
TAGTCGACCTACTCGGGGAAGGTTCTTATGGCGCGGTTTACCGAGCCCAG
TACAAAGCCGACCCGTCCAAACCCCCCGTGGCCGTTAAAATCGTGCCTGC
AGACGAAGACCTGTCGAGCCTGAAACGCGAGATTGCCATCTTGAGCCGAT
GCACGAGTCCCTTCGTGGTCGCTTTCAAAGACTGTTATTTCGTCGATGCC
GAGATATGGATCATCATGGAGTTCTGTATGGGTGGGTCAGTTGCCGACAT
GCTTGATGCCACGCAACACGTCCTCTCCGAGCCCCAAATCCGAGCTATCT
GTGCCAGCGCTGCTCTCGGCCTTGCCTACCTGCACGAGCACCACAACATT
CACCGGGACCTCAAGGCGGGAAATATTCTCCTTTCCTTAGATGGAAAAGC
AAAATTGGCCGATTTCGGTGTGTCCGCAACACTGAACAACACGATGAGCA
AACGCAAGACTGTCATTGGGACGCCCTTCTGGATGGCGCCGGAGGTGATC
CAAGAAATTTCCTATGATGGTAAAGCCGACATTTGGTCCTTGGGCATCAC
GGCCATCGAGATGGCGGAAGGCATGCCCCCGCATTTTAATGTCCACCCCA
TGCGAGCTATCTTCCTCATCCCCTCCAAACCCCCACCCATGCTTGCCTCC
CCCCCTCCTTCCCTCCCTTCCTCCTCCTCGTCCTCCCCCTCTCCTTCTCT
CTGGTCGCAAGACTTCCACGATTTCCTCTCCGTCTGCCTGGTGAAAGATC
CAAACCTGCGAGCAGATGCCGCCACCTTGCTCCAGCACCCTTTCCTCAAG
GCTGATGTTGATTTCCTCCTGGCCAATCCCTCCCTTGGTCTCTCCCCCAT
TCGAGACCTCGTTTCCTCTGCCCTAGAGGCCCTGGCGAAGTACCGTCAGA
ACACCATCCCGGCCCTTCCGCCCTCCCTCCCCCTTGAAGAGCAATTCGAG
AAGACGGGGGTGTTGGAGCTGATGGAGGAGGCGGAGGAGGGGGAGGAGGG
AGGAAGGGAGGGGAGGGGGAGAGGAGAGGAAGATGCGCCCGGTAAGTCTG
TCGACGGTATCGGCGGGTTCTTCTCGAGAAAGAGGAAGGGAGGAAGGGAG
AAAAGGAGGGGAGGGTACTTTGTTGCGCGGCCCTGCGCAAGGCCCTTGGC
TGAGTCAGAGCGGCAGTAGCATGATGAGGAGTGATGCGAAGGGAGGGAGG
GAGGAGGGAGGGAGGGAGGGAGGGCATGGTCCCCAATGGCAGCGGGAATC
CGGTCAAGGGCATCATATGGACACGCTGGTGCGGCCGGTAATCGCCCGCG
TGAGGGGAAAGGAGGGAGAGGAGGACTGCCCCTTACGCCTGTGGGAACTA
CAGGTGCAGGAGGAGCAGCATCAGCAGCGGTGGCGGCAGGGAGGAGCTAG
GTCCTCGGTTGATGTTTCTCAGGCGGGGACGATGGTGAGGCATCGGATTC
GGCCAATGTCAGGTCCGTGCGGTGGTGATGATGGTGCTGCTGCTGGTGCT
GGTGAGAGGGATGGGGGGGGGGCGAGGGCGAGGAAAAGTAACGCGGGCGG
AGCATGGGAGGGAGGGAAGGAGGGATTGAAGGAGGATGGCACGTTACAAA
TCAAGTCCGGGGCGGATGGCTCTTCCCGTG back to topprotein sequence of jgi.p|Nanoce1779_2|560851 >mRNA_10000-protein ID=mRNA_10000-protein|Name=jgi.p|Nanoce1779_2|560851|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MDEDNIIFSPEDPNEVYELVDLLGEGSYGAVYRAQYKADPSKPPVAVKIV
PADEDLSSLKREIAILSRCTSPFVVAFKDCYFVDAEIWIIMEFCMGGSVA
DMLDATQHVLSEPQIRAICASAALGLAYLHEHHNIHRDLKAGNILLSLDG
KAKLADFGVSATLNNTMSKRKTVIGTPFWMAPEVIQEISYDGKADIWSLG
ITAIEMAEGMPPHFNVHPMRAIFLIPSKPPPMLASPPPSLPSSSSSSPSP
SLWSQDFHDFLSVCLVKDPNLRADAATLLQHPFLKADVDFLLANPSLGLS
PIRDLVSSALEALAKYRQNTIPALPPSLPLEEQFEKTGVLELMEEAEEGE
EGGREGRGRGEEDAPGKSVDGIGGFFSRKRKGGREKRRGGYFVARPCARP
LAESERQ* back to topmRNA from alignment at scaffold_49:135172..137718- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10000 ID=mRNA_10000|Name=jgi.p|Nanoce1779_2|560851|organism=Nannochloropsis oceanica|type=mRNA|length=2547bp|location=Sequence derived from alignment at scaffold_49:135172..137718- (Nannochloropsis oceanica)
GGGATATCGATTGATGATGAGGATGGAAGCAAAGAAGGCATCTTGCCAAG
AGGGCGAAGCGGCAGAAGCCTCTGCCTCCGAGAGAAGACGTTATTCGTGG
TTGGTGCTCTTGCCTCCTCTTTCAATGCGATGCAATGCCTGCCAAACGCA
CTCCACAACTTCCATCAAAGTTTGCACAGATCTCTTTAATTGCTACTGAT
TGTACGGCCTGTCTGGTCTTTGCTTTTCCGTGTGCGGATGTCCCCTCGTT
CTGGCATCGCCAGTCGCATCGAATTTCAAAGTGTGGGCCGCCAACGCTTC
CTTGCACTAGACAGAGACATCGCCTGGAGATAACCTCACGCACGTCTCCA
CCTTTATCTTACAGGCCGTCGAGGAGCTGGGGTATATTCGTTGCTGTGCC
CTGCCTTACTGTAGGTCTCGTTTTGGACCCTGCACGTCAAGCTCTCCGGT
ATAGTAGCCGCTGCCGCCGCAAGACGCCATAACACAAGGGACCCTCTTTC
CCCCTACACCACCTATATACCACCATAAGCAGCAGCACCATCACTACGAT
CAGCGCCTACTCTGTCCCCCTTTCACCTCGACCATTACCACGCTCTTCCT
CTCGCTCCGTAGCGAAATCACCCCACACCCTGCCCCAATCACATAATGGA
CGAAGACAACATTATCTTCTCCCCTGAAGACCCCAACGAGGTTTATGAAC
TAGTCGACCTACTCGGGGAAGGTTCTTATGGCGCGGTTTACCGAGCCCAG
TACAAAGCCGACCCGTCCAAACCCCCCGTGGCCGTTAAAATCGTGCCTGC
AGACGAAGACCTGTCGAGCCTGAAACGCGAGATTGCCATCTTGAGCCGAT
GCACGAGTCCCTTCGTGGTCGCTTTCAAAGACTGTTATTTCGTCGATGCC
GAGATATGGATCATCATGGAGTTCTGTATGGGTGGGTCAGTTGCCGACAT
GCTTGATGCCACGCAACACGTCCTCTCCGAGCCCCAAATCCGAGCTATCT
GTGCCAGCGCTGCTCTCGGCCTTGCCTACCTGCACGAGCACCACAACATT
CACCGGGACCTCAAGGCGGGAAATATTCTCCTTTCCTTAGATGGAAAAGC
AAAATTGGCCGATTTCGGTGTGTCCGCAACACTGAACAACACGATGAGCA
AACGCAAGACTGTCATTGGGACGCCCTTCTGGATGGCGCCGGAGGTGATC
CAAGAAATTTCCTATGATGGTAAAGCCGACATTTGGTCCTTGGGCATCAC
GGCCATCGAGATGGCGGAAGGCATGCCCCCGCATTTTAATGTCCACCCCA
TGTGCGTAGCCTGTCTGTCGGCCACCCTTGCCCCCCTCCTTCCCTCCCTC
CCACCCTTCCTCCTTCCTTCCCCTTTCTGGGTCACCTCTGAAGTGGTGTG
CACGAAGTTTTCCTACCGCCTTCCTCCCTCCCTTCTTCTCTCTCTCCTTC
CAGACGTCTCTTGCCACATGTCTAACTCACCTTTTTCCCCCTCCTTCCCT
CCTTCCCTCCCTCCGCAGGCGAGCTATCTTCCTCATCCCCTCCAAACCCC
CACCCATGCTTGCCTCCCCCCCTCCTTCCCTCCCTTCCTCCTCCTCGTCC
TCCCCCTCTCCTTCTCTCTGGTCGCAAGACTTCCACGATTTCCTCTCCGT
CTGCCTGGTGAAAGATCCAAACCTGCGAGCAGATGCCGCCACCTTGCTCC
AGCACCCTTTCCTCAAGGCTGATGTTGATTTCCTCCTGGCCAATCCCTCC
CTTGGTCTCTCCCCCATTCGAGACCTCGTTTCCTCTGCCCTAGAGGCCCT
GGCGAAGTACCGTCAGAACACCATCCCGGCCCTTCCGCCCTCCCTCCCCC
TTGAAGAGCAATTCGAGAAGACGGGGGTGTTGGAGCTGATGGAGGAGGCG
GAGGAGGGGGAGGAGGGAGGAAGGGAGGGGAGGGGGAGAGGAGAGGAAGA
TGCGCCCGGTAAGTCTGTCGACGGTATCGGCGGGTTCTTCTCGAGAAAGA
GGAAGGGAGGAAGGGAGAAAAGGAGGGGAGGGTACTTTGTTGCGCGGCCC
TGCGCAAGGCCCTTGGCTGAGTCAGAGCGGCAGTAGCATGATGAGGAGTG
ATGCGAAGGGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGCATGGTCCC
CAATGGCAGCGGGAATCCGGTCAAGGGCATCATATGGACACGCTGGTGCG
GCCGGTAATCGCCCGCGTGAGGGGAAAGGAGGGAGAGGAGGACTGCCCCT
TACGCCTGTGGGAACTACAGGTGCAGGAGGAGCAGCATCAGCAGCGGTGG
CGGCAGGGAGGAGCTAGGTCCTCGGTTGATGTTTCTCAGGCGGGGACGAT
GGTGAGGCATCGGATTCGGCCAATGTCAGGTCCGTGCGGTGGTGATGATG
GTGCTGCTGCTGGTGCTGGTGAGAGGGATGGGGGGGGGGCGAGGGCGAGG
AAAAGTAACGCGGGCGGAGCATGGGAGGGAGGGAAGGAGGGATTGAAGGA
GGATGGCACGTTACAAATCAAGTCCGGGGCGGATGGCTCTTCCCGTG back to topCoding sequence (CDS) from alignment at scaffold_49:135172..137718- >mRNA_10000 ID=mRNA_10000|Name=jgi.p|Nanoce1779_2|560851|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_49:135172..137718- (Nannochloropsis oceanica)
GCGAGCTATCTTCCTCATCCCCTCCAAACCCCCACCCATGCTTGCCTCCC
CCCCTCCTTCCCTCCCTTCCTCCTCCTCGTCCTCCCCCTCTCCTTCTCTC
TGGTCGCAAGACTTCCACGATTTCCTCTCCGTCTGCCTGGTGAAAGATCC
AAACCTGCGAGCAGATGCCGCCACCTTGCTCCAGCACCCTTTCCTCAAGG
CTGATGTTGATTTCCTCCTGGCCAATCCCTCCCTTGGTCTCTCCCCCATT
CGAGACCTCGTTTCCTCTGCCCTAGAGGCCCTGGCGAAGTACCGTCAGAA
CACCATCCCGGCCCTTCCGCCCTCCCTCCCCCTTGAAGAGCAATTCGAGA
AGACGGGGGTGTTGGAGCTGATGGAGGAGGCGGAGGAGGGGGAGGAGGGA
GGAAGGGAGGGGAGGGGGAGAGGAGAGGAAGATGCGCCCGGTAAGTCTGT
CGACGGTATCGGCGGGTTCTTCTCGAGAAAGAGGAAGGGAGGAAGGGAGA
AAAGGAGGGGAGGGTACTTTGTTGCGCGGCCCTGCGCAAGGCCCTTGGCT
GAGTCAGAGCGGCAGTAGATGGACGAAGACAACATTATCTTCTCCCCTGA
AGACCCCAACGAGGTTTATGAACTAGTCGACCTACTCGGGGAAGGTTCTT
ATGGCGCGGTTTACCGAGCCCAGTACAAAGCCGACCCGTCCAAACCCCCC
GTGGCCGTTAAAATCGTGCCTGCAGACGAAGACCTGTCGAGCCTGAAACG
CGAGATTGCCATCTTGAGCCGATGCACGAGTCCCTTCGTGGTCGCTTTCA
AAGACTGTTATTTCGTCGATGCCGAGATATGGATCATCATGGAGTTCTGT
ATGGGTGGGTCAGTTGCCGACATGCTTGATGCCACGCAACACGTCCTCTC
CGAGCCCCAAATCCGAGCTATCTGTGCCAGCGCTGCTCTCGGCCTTGCCT
ACCTGCACGAGCACCACAACATTCACCGGGACCTCAAGGCGGGAAATATT
CTCCTTTCCTTAGATGGAAAAGCAAAATTGGCCGATTTCGGTGTGTCCGC
AACACTGAACAACACGATGAGCAAACGCAAGACTGTCATTGGGACGCCCT
TCTGGATGGCGCCGGAGGTGATCCAAGAAATTTCCTATGATGGTAAAGCC
GACATTTGGTCCTTGGGCATCACGGCCATCGAGATGGCGGAAGGCATGCC
CCCGCATTTTAATGTCCACCCCATGCGAGCTATCTTCCTCATCCCCTCCA
AACCCCCACCCATGCTTGCCTCCCCCCCTCCTTCCCTCCCTTCCTCCTCC
TCGTCCTCCCCCTCTCCTTCTCTCTGGTCGCAAGACTTCCACGATTTCCT
CTCCGTCTGCCTGGTGAAAGATCCAAACCTGCGAGCAGATGCCGCCACCT
TGCTCCAGCACCCTTTCCTCAAGGCTGATGTTGATTTCCTCCTGGCCAAT
CCCTCCCTTGGTCTCTCCCCCATTCGAGACCTCGTTTCCTCTGCCCTAGA
GGCCCTGGCGAAGTACCGTCAGAACACCATCCCGGCCCTTCCGCCCTCCC
TCCCCCTTGAAGAGCAATTCGAGAAGACGGGGGTGTTGGAGCTGATGGAG
GAGGCGGAGGAGGGGGAGGAGGGAGGAAGGGAGGGGAGGGGGAGAGGAGA
GGAAGATGCGCCCGGTAAGTCTGTCGACGGTATCGGCGGGTTCTTCTCGA
GAAAGAGGAAGGGAGGAAGGGAGAAAAGGAGGGGAGGGTACTTTGTTGCG
CGGCCCTGCGCAAGGCCCTTGGCTGAGTCAGAGCGGCAGTAGATGGACGA
AGACAACATTATCTTCTCCCCTGAAGACCCCAACGAGGTTTATGAACTAG
TCGACCTACTCGGGGAAGGTTCTTATGGCGCGGTTTACCGAGCCCAGTAC
AAAGCCGACCCGTCCAAACCCCCCGTGGCCGTTAAAATCGTGCCTGCAGA
CGAAGACCTGTCGAGCCTGAAACGCGAGATTGCCATCTTGAGCCGATGCA
CGAGTCCCTTCGTGGTCGCTTTCAAAGACTGTTATTTCGTCGATGCCGAG
ATATGGATCATCATGGAGTTCTGTATGGGTGGGTCAGTTGCCGACATGCT
TGATGCCACGCAACACGTCCTCTCCGAGCCCCAAATCCGAGCTATCTGTG
CCAGCGCTGCTCTCGGCCTTGCCTACCTGCACGAGCACCACAACATTCAC
CGGGACCTCAAGGCGGGAAATATTCTCCTTTCCTTAGATGGAAAAGCAAA
ATTGGCCGATTTCGGTGTGTCCGCAACACTGAACAACACGATGAGCAAAC
GCAAGACTGTCATTGGGACGCCCTTCTGGATGGCGCCGGAGGTGATCCAA
GAAATTTCCTATGATGGTAAAGCCGACATTTGGTCCTTGGGCATCACGGC
CATCGAGATGGCGGAAGGCATGCCCCCGCATTTTAATGTCCACCCCAT back to top
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